TCONS_00049323 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049323
Unique NameTCONS_00049323
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length224

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049323 ID=TCONS_00049323|Name=TCONS_00049323|organism=Clytia hemisphaerica|type=transcript|length=224bp
GGGCCGAGGGATTTATTtggatttaacttttttagttcttTCCTTATAGT
TTCAGTGAGTATGTTGATCTCAACTTCTTTATCCGTCCTAGAACCAAATT
CAGGGAGCTCCTCGAGTGGCTAACGTGTAAAAACACTACAGAATTGGTTC
TGGAGGATGTCAGCTTTACTTTTATCGTCATACTTAATGGAGTTTTCGTC
ATTTGGATTCTCAAGCAGAGGGTG
Run BLAST on NCBI

transcript from alignment at scaffold_154:123260..123483

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049323 ID=TCONS_00049323|Name=TCONS_00049323|organism=Clytia hemisphaerica|type=transcript|length=224bp|location=Sequence derived from alignment at scaffold_154:123260..123483 (Clytia hemisphaerica)
CACCCTCTGCTTGAGAATCCAAATGACGAAAACTCCATTAAGTATGACGA
TAAAAGTAAAGCTGACATCCTCCAGAACCAATTCTGTAGTGTTTTTACAC
GTTAGCCACTCGAGGAGCTCCCTGAATTTGGTTCTAGGACGGATAAAGAA
GTTGAGATCAACATACTCACTGAAACTATAAGGAaagaactaaaaaagtt
aaatccaAATAAATCCCTCGGCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031294XLOC_031294Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049323-exon-scaffold_154-1491911889:123260..123483TCONS_00049323-exon-scaffold_154-1491911889:123260..123483Clytia hemisphaericaexon
TCONS_00049323-exon-scaffold_154-1510915933:123260..123483TCONS_00049323-exon-scaffold_154-1510915933:123260..123483Clytia hemisphaericaexon
TCONS_00049323-exon-scaffold_154-1575043694:123260..123483TCONS_00049323-exon-scaffold_154-1575043694:123260..123483Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:123260..123483 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.69989	3.26973	3.28381	1.30023	6.58929	3.84691	9.7193	7.22182	0	3.68392	24.9358	4.0332	6.08312	0	2.96911	3.74395	3.66595	3.06913	4.95988	3.48155	4.30804	2.96631	1.01915	0	6.2359	7.01331	0	0	3.10973	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049323 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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