TCONS_00049322 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049322
Unique NameTCONS_00049322
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length616

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049322 ID=TCONS_00049322|Name=TCONS_00049322|organism=Clytia hemisphaerica|type=transcript|length=616bp
gggggatcccaagaaggggggatcatttaagaagggggtatcagacccct
ttccgcactatgataAGAATTAACACAATACGTGCAGCTGTCTTCCTCCT
TCCACTCATGTCGTTTGTTGAGTGAGAAAATGAGTTTAGAAAAAACAATT
GAAGATTTGATAATAGTaacacaaaaatttcaaaaagacttcaaagaaaa
tagttaatttctttaatgtatttttgattaaaaaatttcaaaaattttaa
agatattaatgTAGTGTAACCACGGCTTAAAAAGAAACTACTTACTTTCT
TTgagtttttgcttgaaaagaggatcacttcttctttttctgtcAAAGTA
AATGCAGTATCCAAGAAATGATAGGCCAGCAACTCCAGCGGCTATCTTAG
CAATTCTTCCGTAGTCCATAATTGttctaaaatttttgatgtAATAAGAA
TATTCTTGCCTAGAGCTAGGATTTTGTCCCTAGGGgatgatgatggtgat
gatgGCCCGGTCAGCCGAAAAAGTGTGTGAAGCGGCTTTCCCTACCCAAA
GTTTGTAACGGTGAACATGTGAGCACTTTGACCTTTATTGAGTCATATCT
CTCAGCGGGATCAGAC
Run BLAST on NCBI

transcript from alignment at scaffold_154:36057..36672

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049322 ID=TCONS_00049322|Name=TCONS_00049322|organism=Clytia hemisphaerica|type=transcript|length=616bp|location=Sequence derived from alignment at scaffold_154:36057..36672 (Clytia hemisphaerica)
GTCTGATCCCGCTGAGAGATATGACTCAATAAAGGTCAAAGTGCTCACAT
GTTCACCGTTACAAACTTTGGGTAGGGAAAGCCGCTTCACACACTTTTTC
GGCTGACCGGGCcatcatcaccatcatcatcCCCTAGGGACAAAATCCTA
GCTCTAGGCAAGAATATTCTTATTacatcaaaaattttagaaCAATTATG
GACTACGGAAGAATTGCTAAGATAGCCGCTGGAGTTGCTGGCCTATCATT
TCTTGGATACTGCATTTACTTTgacagaaaaagaagaagtgatcctcttt
tcaagcaaaaactcAAAGAAAGTAAGTAGTTTCTTTTTAAGCCGTGGTTA
CACTAcattaatatctttaaaatttttgaaattttttaatcaaaaataca
ttaaagaaattaactattttctttgaagtctttttgaaatttttgtgttA
CTATTATCAAATCTTCAATTGTTTTTTCTAAACTCATTTTCTCACTCAAC
AAACGACATGAGTGGAAGGAGGAAGACAGCTGCACGTATTGTGTTAATTC
Ttatcatagtgcggaaaggggtctgatacccccttcttaaatgatccccc
cttcttgggatccccc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031293XLOC_031293Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049322-exon-scaffold_154-1491911889:36057..36672TCONS_00049322-exon-scaffold_154-1491911889:36057..36672Clytia hemisphaericaexon
TCONS_00049322-exon-scaffold_154-1510915933:36057..36672TCONS_00049322-exon-scaffold_154-1510915933:36057..36672Clytia hemisphaericaexon
TCONS_00049322-exon-scaffold_154-1575043694:36057..36672TCONS_00049322-exon-scaffold_154-1575043694:36057..36672Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:36057..36672 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
67.2289	70.2141	50.7987	61.181	28.061	24.9446	14.2588	17.07	19.1561	18.8959	20.3278	19.984	17.4642	20.2086	29.8643	33.5767	40.8873	39.6086	22.2871	16.5041	42.0361	40.8161	51.4977	48.4545	3.65016	3.36623	29.8958	33.2404	29.5602	32.6041
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049322 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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