TCONS_00049296 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049296
Unique NameTCONS_00049296
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length848

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049296 ID=TCONS_00049296|Name=TCONS_00049296|organism=Clytia hemisphaerica|type=transcript|length=848bp
CATCATTCAGGATCGATTTCCAAGTTTACAAATCGTTAGCATACGACGAT
TCTTACGGCACCGAAGAATTCCCAATATATCTCCAAGTCAGTCACCGAAT
CTACTTCGAGTTGTCACTGGACAAGAAAAACTTGAGCGTTATTCCTCACA
ACTGTTACGCAACGAAAACACCGAGCTACTTGGCTGATCCCAAATATTAC
TTTAtcgagaaaagATGCGAAAAAGATGAAACTTACAGGCGACACCACCA
CCAAcgaaaacatcaaatcaaccaaAACAAATTCAGATTCAGTATTGAAG
CCTTTAATTTCAAAGATAGTGATTCAATTTTCGTCCATTGTGAATCGTAT
GTTTGCCAAGATACGTCAAAGGAGAATTGCCAGTTTGGATGTCCTGCTTC
CAATGGAAGATCTAAAAGAGATGGTATAGCTTTGGGTGAAAttgatgaag
aaattttcatgacTTCAACTTTGGAGATTAAGATTGCAGAACCAACATTC
CATAATTATCCAACAAACAACCAAAACCACGACACCAACAATAGAATCAA
AAAGCCAACCAGGACACAAGCATCATACAACAATAACGACGACACCACTG
AAAGCGCTGGCGACAAAAATACCACACTGTTATATCTTCAAATTCCCATT
GTGCTACTCATCATCGTATTGGCATTTGTGTTGTTTAAATACGTTCAGCG
AAGACGTGCCAGAAATGCGGAAACATTTGACCAAGTGCCGTTGAACCAAT
CAATGTAAAATGTAACAGATCTTCACATTTCAATTAGAGACGATTCAATA
TATTGTTGAGCatttttcgaacatttttattgtgATTGCAACTGGCCT
Run BLAST on NCBI

transcript from alignment at scaffold_154:602903..604878-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049296 ID=TCONS_00049296|Name=TCONS_00049296|organism=Clytia hemisphaerica|type=transcript|length=1976bp|location=Sequence derived from alignment at scaffold_154:602903..604878- (Clytia hemisphaerica)
CATCATTCAGGATCGATTTCCAAGTTTACAAATCGTTAGCATACGACGAT
TCTTACGGCACCGAAGAATTCCCAATATATCTCCAAGTCAGTCACCGAAT
CTACTTCGAGTTGTCACTGGACAAGAAAAACTTGAGCGTTATTCCTCACA
ACTGTTACGCAACGAAAACACCGAGCTACTTGGCTGATCCCAAATATTAC
TTTATCGAGAAAAGGTAAAAAAAATTTCCATTCCGAGTTCTTTCTTTACC
GTGAGCAAGTCCACCGCGCGAACACAAATGTTGATAATTTCTTTAAATTC
TGCTTTATCAGCATAAGAGGCGCGCCTCAATATCACAAAACATCAATATC
TTAAAGGTCGACTATCGTCAGATACTAAAAAGATCAAAAGGATGGGTAAT
TTTTTTAGTGTCCCTTTCATCATACCAGACCTCCAGTTAATAAAAACATT
GGCCAAAGTCTACATCACAGTTGAATAAAATCCGACAACGACTAAAATAA
CCTAGGTACCAAAGTATGCCAAAGATGAACGAAAAGAGAGTTTTAAACTT
AAACATCTCCTTACAAAGTATAGATGGGAACTAGACTTTGTAGAGAAATT
AACATTTTCGTCATCTCTCAAATTTTTAAAGCGTTTAATAGCTTTATTTT
TGACTCTCAAACAATATTCAACATTACAATAGATTGAACTTCAGGGTAAA
AAGTAGTCCTCAAACCCTTGAAATTATACATTTTAGATGCGAAAAAGATG
AAACTTACAGGCGACACCACCACCAACGAAAACATCAAATCAACCAAAAC
AAATTCAGATTCAGTATTGAAGCCTTTAATTTCAAAGATAGTGATTCAAT
TTTCGTCCATTGTGAATCGTATGTTTGCCAAGATACGTCAAAGGAGAATT
GCCAGTTTGGATGTCCTGCTTCCAATGGAAGATCTAAAAGAGATGGTATA
GCTTTGGGTGAAATTGATGAAGAAATTTTCATGACTTCAACTTTGGAGAT
TAAGATTGCAGGTAAAGATAAGGTGTTTCCAGTTCTGAAATGGAGAAATC
TTTCTAAAAAACCTACAATGAAGTGCTATCTTTATAACCGTGGAAGTTCA
ATAAAAATCAGCTGTAAATACCGATCTCTAAAGAGTCCTTCTTGGAGTCT
ATAGCATTTAAAACCTTCTTTATCGAAACAGGCCTCGTTGAAAGGTCGTG
TATGGTTTTACTTGTAATATATGCCCATGAATTCTGCCAATCAAATTTCC
TCCTTTACTTTACTTGTCTTACGTAGAAATGTTTGTCTTAAGTAGATATG
TTTTGAATCTTGGAGGTCTTCTGATATTTAGGAGCTTGGTGAGGATAGAC
ATTTTCATAAATTACGTCACGAATATCACTTGCCTCGTATTCAGACAATT
ACCCCTTGAGACATTAAATGATTCTTTTATGAATGGGAAGTGGTTTTAAT
AAAATCCACTGGGAGTTAATCACCATGGCAATAATTTCAAAACGAGCCAA
GTGATGCTCGTGACGTAATTTATGAAAAGGTTGCACTAAATTTCTAACAA
TTAGTGATGTTTATGACGTTTGATAACGTATTGTTATGACCAACTTATGA
CAATCTAATTTTAATAGAACCAACATTCCATAATTATCCAACAAACAACC
AAAACCACGACACCAACAATAGAATCAAAAAGCCAACCAGGACACAAGCA
TCATACAACAATAACGACGACACCACTGAAAGCGCTGGCGACAAAAATAC
CACACTGTTATATCTTCAAATTCCCATTGTGCTACTCATCATCGTATTGG
CATTTGTGTTGTTTAAATACGTTCAGCGAAGACGTGCCAGAAATGCGGAA
ACATTTGACCAAGTGCCGTTGAACCAATCAATGTAAAATGTAACAGATCT
TCACATTTCAATTAGAGACGATTCAATATATTGTTGAGCATTTTTCGAAC
ATTTTTATTGTGATTGCAACTGGCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031280XLOC_031280Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049296-exon-scaffold_154-1575043694:604665..604878TCONS_00049296-exon-scaffold_154-1575043694:604665..604878Clytia hemisphaericaexon
TCONS_00049296-exon-scaffold_154-1575043694:603868..604142TCONS_00049296-exon-scaffold_154-1575043694:603868..604142Clytia hemisphaericaexon
TCONS_00049296-exon-scaffold_154-1575043694:602903..603261TCONS_00049296-exon-scaffold_154-1575043694:602903..603261Clytia hemisphaericaexon
TCONS_00049296-exon-scaffold_154-1510915933:604665..604878TCONS_00049296-exon-scaffold_154-1510915933:604665..604878Clytia hemisphaericaexon
TCONS_00049296-exon-scaffold_154-1510915933:603868..604142TCONS_00049296-exon-scaffold_154-1510915933:603868..604142Clytia hemisphaericaexon
TCONS_00049296-exon-scaffold_154-1510915933:602903..603261TCONS_00049296-exon-scaffold_154-1510915933:602903..603261Clytia hemisphaericaexon
TCONS_00049296-exon-scaffold_154-1491911889:604665..604878TCONS_00049296-exon-scaffold_154-1491911889:604665..604878Clytia hemisphaericaexon
TCONS_00049296-exon-scaffold_154-1491911889:603868..604142TCONS_00049296-exon-scaffold_154-1491911889:603868..604142Clytia hemisphaericaexon
TCONS_00049296-exon-scaffold_154-1491911889:602903..603261TCONS_00049296-exon-scaffold_154-1491911889:602903..603261Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:602903..604878 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.221155	0.102838	0	0.0115225	0.0748728	0	0.399925	0.168095	0.0889353	0	0.543078	0.0840456	0.0550792	0.181988	0.0785529	0.329104	23.34	48.5607	0	0.046062	34.8873	35.7993	0.932603	0.873768	13.5859	8.96836	0.0761299	0.0812479	0.53895	0.502278
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049296 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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