TCONS_00049280 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049280
Unique NameTCONS_00049280
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2195

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049280 ID=TCONS_00049280|Name=TCONS_00049280|organism=Clytia hemisphaerica|type=transcript|length=2195bp
CAATAACATGAACAACAACGACCGTCAATCTAACAACAACATGAACAACA
ACGACCGTCAATCTAACAATAACGACCGTCACTCTAACAACAACATGAAC
AACAAAGTCCGTCAATCTGACAATAACATGAACAACAACGACCGTCAATC
TAACAATAACGACCGTCACTCTAACAACAACATGAACAACAACGACCGTC
ACTCTAGCAACAATATGAACAACAACGACCGTCAATCTAACAATAACATG
AACAACAACGACCGTCAATCTAACAATAACAACCGTCAATCTAACAACAA
CATGATCAATAACAACCGTCAATCTAACAACAACATGAACAACAACGACC
GTCAATCTAACAACAACGACCGTCAATCTAACAACAACGACCGTCActct
aacaacaacaacaacaacgatcAAATATCGCATAATAGCAATGTAAACGC
TCGTGAATCTAAAACCGAAGTTGCAAGCTTAAGAGACCGATCTGAAACCA
CTAACAAAGATAGACAACGAAACAACTACAACTACAAAAACTTCAACAAC
AGACGATTTAACAATCTCAAAAAATACAACCATCAAAACAAACTAGAGTG
TGACCACGATCATATGCGATTCACCTTTAAACCATCATTTGGTCGGGATA
TCGAGATTGAAAGAGTGACATTGAGCAGTGATTCATGTAGGATGAGATAC
GATCGTATGAGAGATGAATACATGACTGTGACAAGCTATGAAGAATGTGG
CACGGGAATGGAAGAGGAGGAGGAGAACAtcgtttttatgAACGTTGCAC
GCGTCATCTACCGCAACACTACCATTAAAAACGCCTTGATTGAACGTAAG
AACATCTACAATATCGGATTAGAATGTCGATTGAAGAAAACTGCAGTCAA
CACGATCAAGGGAAACAGAGAAGATGATTCAGGAATGATCGTCAGTCCAC
AATCCTACGAAATCAATGATTATGCTAGAAGTACTGGAAACTTCAGAATT
GATTTCCAAGTTTACAAATCAAACCAATACAACCACTCATACGGTGTTGA
GGAATTCCCAATCTACTTGGGAATCAGTAACCGCATCTACTTTGAACTCT
CCATGGATCAACCAGACTTGACACTCATTCCACATGAATGTTACGCCACT
GCTGACCGAAGTTACCTATCCAGACCGCGATATCACATCATTGAAGAAAG
ATGTCCAAAAGACGAGACGTACGTCGAACACATGCAAGATGAGAATACCT
ACCGATTCAGTATCCAAGCTTTCACATTCAAGGACGGACAAGACAGTATT
TATGTTCACTGTAAANAATACCTACCGATTCAGTATCCAAGCTTTCACAT
TCAAGGACGGACAAGACAGCATTTATGTTCACTGTAAATCATACGTCTGC
CAAAACACAAGCAACGAGCTGTGCAACTTTGGATGCAACAAAAATGGAAA
CAGCAACGACCGTTTCCAAAACAACAACAGGAACAGCAACGACCGTTTCC
AAAATAACAACAGAAACAGCAACGACCGTTTCCAAAACAACAACATGAAC
CGCAACGACCCTAACAACTTCCTTTTAAGGAGATCAAGAAGAAGCGTAGA
AGCAAATACAATTGGACAAATTCATGGTTTCATGACATCCACATTAGAAA
TCAAAGTCACAACCACCGATAAGAAAGTCGCAGCCAGAATCGAAGTTACC
GAGACATCCGAAGATAAATCCATCCTGAGCTATTTGCCATACCTCCAAAT
CCCATTGGTTTTACTAGTTGTCGGTGCCGTAGTAATGGCATGGAGATGTA
TCAAACGAAATAGAGCCGCATCTAAAGAAGTGAATTGAGAGAAAAAACTA
TTTGTTTACGATGTAAACTAAACTTTAACACAGGAGGATCTTGTTTAATG
AAAATCGATCCTTATTGAAGATGGTCCAAGTCCAGCTAAATTGAAGGCAT
CTATAATGGTCTAATTTTAGCCAATCGTTTTCAGAAATTTAACCGACTTA
GATGAATAAAATTTATAGTATTTTACAAAAGTTTACCAGTTTGTTAAAAT
TAGATAGTTTTTGTGTTTCTTTGAAATGTATTAAAGTGCCCATATTTATT
TAGAAATATCTAGAAAcatatattttgttttgaatgaaatattatgaaaa
aattAATCTATACCTTTAGAGATTTTTCTCAAACTTTTTTGTTGA
Run BLAST on NCBI

transcript from alignment at scaffold_154:521349..527455-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049280 ID=TCONS_00049280|Name=TCONS_00049280|organism=Clytia hemisphaerica|type=transcript|length=6107bp|location=Sequence derived from alignment at scaffold_154:521349..527455- (Clytia hemisphaerica)
CAATAACATGAACAACAACGACCGTCAATCTAACAACAACATGAACAACA
ACGACCGTCAATCTAACAATAACGACCGTCACTCTAACAACAACATGAAC
AACAAAGTCCGTCAATCTGACAATAACATGAACAACAACGACCGTCAATC
TAACAATAACGACCGTCACTCTAACAACAACATGAACAACAAAGTCCGTC
AATCTGACAATAACATGAACAACAACGACCGTCAATCTAACAATAACATG
AACAACAACGACCGTCAATCTAACAACAACATGAACAACAACGACCGTCA
ATCTAACAACAACATGAACAACAACGACCGTCAATCTAACAATAACATGA
ACAACAACGACCGTCAATCTAGCAATAACATGAACAACAACGACCGTCAA
TCTAACAATAACGACCGTCAATCTAACAACAACATGAACAACATCGACCG
TCAATTTGACAATAACGACCGTCAATCTAACAACAACATGAACAACAACG
ACCGTCAATCTAACAACAACATAAACAACAAAGTCCGTCAATCTAACAAC
AACGTGAACAACAACGACCGTCACTCTAGCAACAACATGAACAACAACGA
CCGTCAATCTAACAATAACGACCGTCAATCTAACAACAACATGAACAACA
ACGACCGTCAATCTATCAATAACGACCGTCACTCTAACAATAACATGAAC
AACAACGACCGTCACTCTAGCAACAACATGAACAAAAACGACCGTCAATC
TAACAATAACGACCGTCAATCTAACAACAACATGAACAACAACGACCGTC
ACTCTAGCAACAACATGAACAACAACGACCGACAATCTAACAACCACATG
AACAACAACGACCGTCAATCTAACAACAACATGAACAACAACGACCGTCA
CTCTAGCAACAACATGAACAACAACGACCGACAATCTAACAACCACATGA
ACAACAACGACCGTCAATCCAACAATAACAACCGTCAATCTAACAACAAC
ATGAACAAAAACGACCGTCAATCCAACAATAACGACCGTCAATCTAACAA
CAACATGAACAACAACAATCGTCACTCTAGCAACAACATGAACAACAACG
ACCGTCACTCTAGCAACAATATGAACAACAACGACCGTCAATCTAACAAT
AACATGAACAACAACGACCGTCAATCCAACAATAACAACCGTCAATCTAA
CAACAACATGAACAACAACGACCGTCACTCTAGCAACAACATGAACAACA
ACGACCGACAATCTAACAACCACATGAACAACAACGACCGTCAATCTAAC
AATAACATGAACAACAACGACCGTCAATCTAACAATAACAACCGTCAATC
TAACAACAACATGATCAATAACAACCGTCAATCTAACAACAACATGAACA
ACAACGACCGTCAATCTAACAACAACGACCGTCAATCTAACAACAACGAC
CGTCACTCTAACAACAACAACAACAACGATCAAATATCGCATAATAGCAA
TGTAAACGCTCGTGAATCTAAAACCGAAGTTGCAAGCTTAAGAGACCGAT
CTGAAACCACTAACAAAGATAGACAACGAAACAACTACAACTACAAAAAC
TTCAACAACAGACGATTTAACAATCTCAAAAAATACAACCATCAAAACAA
ACTAGAGTGTGACCACGATCATATGCGATTCACCTTTAAACCATCATTTG
GTCGGGATATCGAGATTGAAAGAGTGACATTGAGCAGTGATTCATGTAGG
ATGAGATACGATCGTATGAGAGATGAATACATGACTGTGACAAGCTATGA
AGAATGTGGCACGGGAATGGAAGAGGAGGAGGAGAACATCGTTTTTATGG
TAAGTTTTATAGAAATTACATTTGATTTTCATAGATATTTTTTATGATAT
AGAAAGAAAGGGCAGTTCTGTGTTGACAAAGCAGAACTTTCAACGGCACT
AAAAACTAGATCTAGTGCTCGATGCATTGCACCAGTTACCATTAGGGTAT
CACTTTCAAAAAAACTCCGATCAAAGATTTTGCTTGGCTAAGATTGAGAA
GCTGCTTCCAGGGTTTAAATACAGCTCAGTGACTGCAATATTCCTTCATT
CTAGAATGTTGCAGGACGTGTAGGACGTAGGGTCTACGCCAATTTGCTTA
GTTTCATTTAATTGTAGCCTCAGGATGCGGTGCAATGAGAAAAAATCTTC
CATGTAAATTCATTAACTGTCTCCTAAAAAGCCGACCACGCCGCTATGGG
TTGGTAGGTGTATTTGAACTATATATGCGTGTAAAGGACTATTCCTTCAT
TCTAGAACGTTGCACGCGTCATCTACCGCAACACTACCATTAAAAACGCC
TTGATTGAACGTAAGAACATCTACAATATCGGATTAGAATGTCGATTGAA
GAAAACTGCAGTCAACACGATCAAGGGAAACAGAGAAGATGATTCAGGAA
TGATCGTCAGTCCACAATCCTACGAAATCAATGATTATGCTAGTAAGTGG
TATTTGTGACTCTATCTCTATATGTCACGACAAAATCTATTAGGGGGGGT
GTTAAAATGTCAGACATGACGTTTAGTGTCGTGGTGGTACGCCCAAAAAG
AACGAATCCAAGAACGAGGTTCAATGAAATGCTTCTAATACTACCCAGCT
GGCACACAACGTTGTTTCAACGTTTATCTAACGTTCACAACATCCATATA
ACGTTAGATGAACGTTGAAACAACGTTGTGTGTCAGCTGGGTAGTCAAAT
GACTATAGTCTTACGGCTTGGGGACACGAAAAGTCTTTTTCGCGTTGGTG
CAATGCAACATGCTCTATCCCACTAACACAAGAAAATGCGTGTCCCATGG
TTTCTTTTTTTGTTTCATGGGACAAAAAGTGAGGGAAATACCCAAAAGAC
ACAGAGATTTTGTCCCAGAGACAAAAGTGAGATATCACTTTTATTGGTAG
AAAGAAAAATGGGTAGATACACGAGAAAGCTTTTCAGGTTGGTGACATGG
AGCATGTCGCATTGCACCAACGTGAAAAAAACTTCTCGTGTCTCCCCAAG
CCTTTACGTCAAATTTTGGATTTTTTTTATCATTTTGTCATTTTGTCATC
TACAGCAGATCAAAGGCTTTAATTCCCGATTTCTATTTTCAGGAAGTACT
GGAAACTTCAGAATTGATTTCCAAGTTTACAAATCAAACCAATACAACCA
CTCATACGGTGTTGAGGAATTCCCAATCTACTTGGGAATCAGTAACCGCA
TCTACTTTGAACTCTCCATGGATCAACCAGACTTGACACTCATTCCACAT
GAATGTTACGCCACTGCTGACCGAAGTTACCTATCCAGACCGCGATATCA
CATCATTGAAGAAAGGTGAGAAATTGTGATTTTGCTAAATTACTCTTTTT
ATAAGAACAAACTATATAAGAACATAAAAGCTTCGATGGCCAAAATATTA
AGGACATGTTATGCACATTTCAAGGCTTTGTGGACTCTGAAACACCCGAT
TTCTTAGGAAAATGGACAAGATTAACCCCAAAATGGTGAAAATAAAAATA
TTTTAGGCTTAAAACTCAAAAAGTAAAGAACATCCGAAAGCTTCGAAAAT
GTGGGGTTTTCTTATATAAAAGAACGTTTATGAACAGGCACGACACATAG
AATAACAACAGGTACATCTGAAGTACCAGAATTATTGCGATCAAGCCATG
ATACTTTTGTTTTTCTTGCACCTATACTTATAACGAAATTTTGACTTTCA
AATTGGTATCACGGCTTTATCATCGAAGAAGGGGCAGCGTTAAAATTACA
ACCAAAAACTTGCACACACCGTTGTTTCAACGTTCATCTTATGTTATATG
GACGTTGTGAACATTAGATAAACGTTGAAATAACGTTGTGTGCAGCTGGG
AAACTGTTGACCATACATATAATTTCTGTTAGATGGCGGGTGGGTAAGAA
AAACTTATAAACACAGCAGATTCTATACAATTTGACCTCATTTTCGTTCC
CCTTAAAATACACTCGTAAAGATAATTCCCTAATCCCAACATCTTTATAG
AATTCGAAAGAATTAAATTTTCTGCTTATGGTTAAGATTAGCGAAACAGT
GACCTTTCTGGTCTTANCATCTTCAGAATTCGGAAGAATTAAATTTTCTG
CTTAGGGTTAAGATTAGCGAAACAGTGACCTTTCTAGTCTAAAATCTTTA
GATGTCCAAAAGACGAGACGTACGTCGAACACATGCAAGATGAGAATACC
TACCGATTCAGTATCCAAGCTTTCACATTCAAGGACGGACAAGACAGTAT
TTATGTTCACTGTAAANAATACCTACCGATTCAGTATCCAAGCTTTCACA
TTCAAGGACGGACAAGACAGCATTTATGTTCACTGTAAATCATACGTCTG
CCAAAACACAAGCAACGAGCTGTGCAACTTTGGATGCAACAAAAATGGAA
ACAGCAACGACCGTTTCCAAAACAACAACATGAACAGCAACGACCGTTTC
CAAAACAACAACATGAACAGCAACGACCGTTTCCAAAACAATAATATGAA
CCGCAACGACCGTTTCCAAAACAATAACATGAACAGCAACGACCGTTTCC
AAAACAATAACATGAACAGCAACGACCGTTTCCAAAATAACAACAGGAAC
AGCAACGACCGTTTCCAAAATAACAACAGAAACAGCAACGACCGTTTCCA
AAACAACAACATGAACCGCAACGACCCTAACAACTTCCTTTTAAGGAGAT
CAAGAAGAAGCGTAGAAGCAAATACAATTGGACAAATTCATGGTTTCATG
ACATCCACATTAGAAATCAAAGTCACAACCACCGGTAAAAATCTTATTCT
TTTAACTAAACATTAGGGTTTTGTGTGTGAACGGAAATTAGCCAGGAAGC
CATTCGGAATATCAGATAACAGAGCAGAACGAACCAAATAGCTTTGCACA
TGATGTCACTGATAAGAAGGCACACGACTTTTAACCCAAAAAGTTACCAA
AAAATAATTTTATCCAAGCAATACCGATTTCTTATTCTTTTTTGTTATCT
TGAATCACCGACCATGGGAAATGCGAATTGTCAGGAGGATTTGAGCAAAA
TCTTATTCAATACTCTCGGGTACCTAATAGCCGGGGGGTTGGAATAAGCG
GGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNTTGGAATAAAAATGTCCTGGGTGGAAAA
TTTTTGAAAAGGAGGCTAATACAGCTGAATTAGGACAAAAAAGGGAACTT
TCAAAAACATTTTTCCAAAAATTAATAAGCGGGGGAGTTGGAATAAGAAT
GTCCTGGGTGGAAAATTTTCCAGTTCTGTGAGCCTTACAAAAAATTAACC
CAAAAATTAAAAAGAAGCATCTTACAAGCATTTCAATTGGATGATCCACA
TTTTCAACTTTTATATTCCTTCATTTTTAGATAAGAAAGTCGCAGCCAGA
ATCGAAGTTACCGAGACATCCGAAGATAAATCCATCCTGAGCTATTTGCC
ATACCTCCAAATCCCATTGGTTTTACTAGTTGTCGGTGCCGTAGTAATGG
CATGGAGATGTATCAAACGAAATAGAGCCGCATCTAAAGAAGTGAATTGA
GAGAAAAAACTATTTGTTTACGATGTAAACTAAACTTTAACACAGGAGGA
TCTTGTTTAATGAAAATCGATCCTTATTGAAGATGGTCCAAGTCCAGCTA
AATTGAAGGCATCTATAATGGTCTAATTTTAGCCAATCGTTTTCAGAAAT
TTAACCGACTTAGATGAATAAAATTTATAGTATTTTACAAAAGTTTACCA
GTTTGTTAAAATTAGATAGTTTTTGTGTTTCTTTGAAATGTATTAAAGTG
CCCATATTTATTTAGAAATATCTAGAAACATATATTTTGTTTTGAATGAA
ATATTATGAAAAAATTAATCTATACCTTTAGAGATTTTTCTCAAACTTTT
TTGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031278XLOC_031278Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049280-exon-scaffold_154-1575043694:527275..527455TCONS_00049280-exon-scaffold_154-1575043694:527275..527455Clytia hemisphaericaexon
TCONS_00049280-exon-scaffold_154-1575043694:526336..526368TCONS_00049280-exon-scaffold_154-1575043694:526336..526368Clytia hemisphaericaexon
TCONS_00049280-exon-scaffold_154-1575043694:525607..526182TCONS_00049280-exon-scaffold_154-1575043694:525607..526182Clytia hemisphaericaexon
TCONS_00049280-exon-scaffold_154-1575043694:524964..525150TCONS_00049280-exon-scaffold_154-1575043694:524964..525150Clytia hemisphaericaexon
TCONS_00049280-exon-scaffold_154-1575043694:524091..524313TCONS_00049280-exon-scaffold_154-1575043694:524091..524313Clytia hemisphaericaexon
TCONS_00049280-exon-scaffold_154-1575043694:522977..523254TCONS_00049280-exon-scaffold_154-1575043694:522977..523254Clytia hemisphaericaexon
TCONS_00049280-exon-scaffold_154-1575043694:522622..522811TCONS_00049280-exon-scaffold_154-1575043694:522622..522811Clytia hemisphaericaexon
TCONS_00049280-exon-scaffold_154-1575043694:521349..521875TCONS_00049280-exon-scaffold_154-1575043694:521349..521875Clytia hemisphaericaexon
TCONS_00049280-exon-scaffold_154-1510915933:527275..527455TCONS_00049280-exon-scaffold_154-1510915933:527275..527455Clytia hemisphaericaexon
TCONS_00049280-exon-scaffold_154-1510915933:526336..526368TCONS_00049280-exon-scaffold_154-1510915933:526336..526368Clytia hemisphaericaexon
TCONS_00049280-exon-scaffold_154-1510915933:525607..526182TCONS_00049280-exon-scaffold_154-1510915933:525607..526182Clytia hemisphaericaexon
TCONS_00049280-exon-scaffold_154-1510915933:524964..525150TCONS_00049280-exon-scaffold_154-1510915933:524964..525150Clytia hemisphaericaexon
TCONS_00049280-exon-scaffold_154-1510915933:524091..524313TCONS_00049280-exon-scaffold_154-1510915933:524091..524313Clytia hemisphaericaexon
TCONS_00049280-exon-scaffold_154-1510915933:522977..523254TCONS_00049280-exon-scaffold_154-1510915933:522977..523254Clytia hemisphaericaexon
TCONS_00049280-exon-scaffold_154-1510915933:522622..522811TCONS_00049280-exon-scaffold_154-1510915933:522622..522811Clytia hemisphaericaexon
TCONS_00049280-exon-scaffold_154-1510915933:521349..521875TCONS_00049280-exon-scaffold_154-1510915933:521349..521875Clytia hemisphaericaexon
TCONS_00049280-exon-scaffold_154-1491911889:527275..527455TCONS_00049280-exon-scaffold_154-1491911889:527275..527455Clytia hemisphaericaexon
TCONS_00049280-exon-scaffold_154-1491911889:526336..526368TCONS_00049280-exon-scaffold_154-1491911889:526336..526368Clytia hemisphaericaexon
TCONS_00049280-exon-scaffold_154-1491911889:525607..526182TCONS_00049280-exon-scaffold_154-1491911889:525607..526182Clytia hemisphaericaexon
TCONS_00049280-exon-scaffold_154-1491911889:524964..525150TCONS_00049280-exon-scaffold_154-1491911889:524964..525150Clytia hemisphaericaexon
TCONS_00049280-exon-scaffold_154-1491911889:524091..524313TCONS_00049280-exon-scaffold_154-1491911889:524091..524313Clytia hemisphaericaexon
TCONS_00049280-exon-scaffold_154-1491911889:522977..523254TCONS_00049280-exon-scaffold_154-1491911889:522977..523254Clytia hemisphaericaexon
TCONS_00049280-exon-scaffold_154-1491911889:522622..522811TCONS_00049280-exon-scaffold_154-1491911889:522622..522811Clytia hemisphaericaexon
TCONS_00049280-exon-scaffold_154-1491911889:521349..521875TCONS_00049280-exon-scaffold_154-1491911889:521349..521875Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:521349..527455 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.110143	0	0.14711	0.0895075	0.120809	0.201299	0.0115028	0.15371	0.0296344	0	0	0.0185703	0.029258	0	0.00334105	0	2.12128	0.00623683	0	0.071709	1.61312	1.35371	23.266	28.0336	79.8584	59.3616	1.66291	1.08841	0.0256124	0.000159846
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049280 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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