TCONS_00049272 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049272
Unique NameTCONS_00049272
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2107

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049272 ID=TCONS_00049272|Name=TCONS_00049272|organism=Clytia hemisphaerica|type=transcript|length=2107bp
AGAATATTCTAAAGCAAGTTATTTTaagggaagaaactttcgcaaatGGA
GCTActtatccgcgaaatttccGCACTTTCGCAAATTTCNGTAGTACTTA
TAAAATGGGAATTCAGTGGCATTGGCTCAGCGAGAGTATTGGTTCGACCC
AATCTCCTCGATCCTTACGTTTAAAAAACATTGTCAATGATAGTGCACTG
GCAACCCAACGAATGATGAAGCGCGTCTCCGATAAATTAGTCAACGTTGA
AAATGCACCAAAACATTTTACGACAGGAAAAGCTGGAATTGCACTCACTG
TTTTCTCAATCGTGCTCAATTTGTTGAATATGTATACCGATTATGCTGTA
GCGTACTATTATTTCGAAAATAACGATGTTTNCTTCTCAATCGTACTCAA
TTTGTTGAATATGTATACCGATTATGCTGTCGCGTACTATTATTTCGAAA
ACAACGATGTCTTTTTTGGTGGATGGACTTTAACCCCTGTTTTGctgACC
TCCTTCTTCATCAGTTTGTACACTTTTATTCTACACAACAAATCAAACGG
AAAATTCCTCATGAAAATTCACTTCTCAAAACCCTTGGTATACAGTTTAT
GCCTAATATTACATGGACACGTAGCTCGATGTCTGATGTGGTTGACTGTA
CTCGTCGAAAGAATCCCTTTACTGGGCGTACGTAAGGCGTTATGGGCGTT
TCGAGATATTACAAGTTATGCCGAGACTTTCACACACGCACTTCCACAAT
TATTCCTTCAGATGTATATAATCGTGCTTTATAATGGTGATTTTAATGCA
ATCCAATTAATTTGTTTTGTGTCGTCATGGTTATCGGCAGCCTGGGGTAT
ACAGTCTCAATTTGACGGTATAAAATGGAAATTATTGACGTTCGAAATGA
ATCTGTTTTGGTTTGCATCCAGAGCTGCGGCGACCACGATGTTAGCAAGT
ATCCATAAATCAGCACCATTCATCATGATCCTCGGTCATTTTCTCTTAAT
GTTTCCGTTATggttctggcaaaacaactttaAGCCATTCCGTAAAAAAC
GAGGCAGTAACCGATTTGAATTAATCATCACCGATGCATTTTACGCTGGT
ATTTACGCCGGTAGTAACACGGCTACTCCAACGACATGCAAATATCAATT
CTGGTTAGCTGTTGTATTGTTTTTTGAGAATATTCTATGTGTCATTCTTG
GAATGCGATTCGGGACAGTTCAACGTCCTCTGGAGCATTTCATTAACAAT
CAAATGGAATATAAACATCATAGATTGAACTATGGCGATTTGCTCAATAG
AACAGCAGGTTATTGTGTTGATACTCCTCACTGGAAGTATAAAGTTCACT
GTACAGTACCGTATAATACTTGGATTAAATCAAGAATCACATCTTGGCTA
GCCGTCGGTGTCACCGTATTTGCTTTCATTCAGCTCGTGATTATTGTGAT
TCTACGGCAACGAAAAATCATCGCCGAAGACGCCATGGTCTCCAAGCTTG
GTGCTGCAAAACAGCTAAGTAAAGCTGAAGGTAGGGTTACAGCTACTTGT
TCAGAAGCTACCGAATACAATACCCGAATGACACCGGAGCCCTCGCCGTA
CATGAACAGAGCATCACCCTGCGTTGACAAAGAATTTCATCAACCATCAC
TTCTGGCAATCTCCACTGACCAGTCTTCTTTGTCAAGAGCGAAGAATCAA
ACATTAGATTCACCAAAACCGTTTGTTCACCCCCGTCTCAGTGATAAACA
TTCATCATCTACAAACAATATATTCAGTCAAAATAATACTAGGAATCGGA
GCGAGCCGGGGGCTTCGTCGCCCAGTCTTTCAGTCACTGTTAAGGATATC
AACATTGAAAGTGTATCAGTGACGCAAACACCATCATGTAGCCAAGCTGA
TATAAGACTTCATATGGATATTACTGTAAGCCGTAAGAATAGTCagaact
aaataTTTGGTaatatactatatatatactaaAACCTTAAAACCAGTAAT
TTTTGCGTCCTAAAGAACTTGTATATATTCGCTGTTGCAGATCAGCTGTT
ATATTTTTAAtgtaaataaaatataattttaattttacgaAAGAATCTAT
TTATTTG
Run BLAST on NCBI

transcript from alignment at scaffold_154:419337..423946-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049272 ID=TCONS_00049272|Name=TCONS_00049272|organism=Clytia hemisphaerica|type=transcript|length=4610bp|location=Sequence derived from alignment at scaffold_154:419337..423946- (Clytia hemisphaerica)
AGAATATTCTAAAGCAAGTTATTTTAAGGGAAGAAACTTTCGCAAATGGA
GCTACTTATCCGCGAAATTTCCGCACTTTCGCAAATTTCNGTAGTACTTA
TAAAATGGGAATTCAGTGGCATTGGCTCAGCGAGAGTATTGGTTCGACCC
AATCTCCTCGATCCTTACGTTTAAAAAGTAAGTTTGAAATTCGAAATTGT
GTATATACGTAGCCCCACAACGAGATTTTATAGGTATTTAGGTATATCCA
GATATCTCATCAGTTTCATTTACCCTTAAATGTTTTCTTGTTACAAAAAC
GCTTCATGATTTGATACTCAATCGACAACCGGTTTCTTATAATTACTCAA
TCGACAATTTCAGTTGGTGCAAGAAAAAACAAACTAACAACAAGCCCTAA
CCCTAACTATCAAAAAACGACATATTTCAAATCCTAACCCTGACTATCAA
CAAACCCCGACCTTTGCTCAGTGACTACCACCCCTACATATTCATTACTT
TTTGTACTTTACGCTATTTAACGACTAGCGGTTAAAAGAACGATAAATCA
AGCATGCGTATAAGTCACTATTTGGATACTCTGTACCAGAGTGTATCTCA
CGATTATCGTAGCGTAGTACGGCAATGAATTTTGAAATTAGCCGTAGATA
TCGGGTTTGTGTACAGACTACTATTTGGATGGGCTGGAAATTCTACTAAA
ACCGTAGAAGTTTTATTCATACTGTAATGGTAGATAAAGTATTTACCATA
AATACCAATAGTAGATTTACCGATGTTTAAATACCTACACATATAGTAGA
AATAAGTGTGAGGACGTGTTGGTTAGGAATATTGCGATGGCTTTAAAAGT
TACATTTTCTTTACCAAGAAACCAAGACAATAATTAAACGATACTCCTTA
CACCCTATTTTATAAAAACAAATTTATAAGAATAACGAGGGCCAAAAATG
CCTTGAAAAAAAGAAAAATTTAAGAACAATGAGCTGATCTTGGAATGGCT
AAAATTTCAACAAGTTAAGGGTCAAAGAGTGTTATTACATGCTCTTTTTT
ATAAAAATACTAGACTATTTTGCCATTTCATGGATATTCGTAAAATTTTG
GGGGAAAATCGCCCTAAAATATTCTTACAGTGCTCTTAGGTTAGAAACCA
AACTCTCAAAACCCAAATTTCTCTGAAAATGGCATCCTTTAGGTTCAGTT
TCCAAATTCAATGATGGTAGTATTTTTAGCACATTGTTAATTTTTGACCT
ATTTTTTCATGAATATTCTTATAAAGTATATTCTTATGAAAAAAGCGTGT
ACCATTTTTCTTGGCCGACATTGTCGACAATAAACTCTTCTTTTCTTATA
GACATTGTCAATGATAGTGCACTGGCAACCCAACGAATGATGAAGCGCGT
CTCCGATAAATTAGTCAACGTTGAAAATGCACCAAAACATTTTACGACAG
GAAAAGCTGGAATTGCACTCACTGTTTTCTCAATCGTGCTCAATTTGTTG
AATATGTATACCGATTATGCTGTAGCGTACTATTATTTCGAAAATAACGA
TGTTTNCTTCTCAATCGTACTCAATTTGTTGAATATGTATACCGATTATG
CTGTCGCGTACTATTATTTCGAAAACAACGATGTCTTTTTTGGTGGATGG
ACTTTAACCCCTGTTTTGGTGAGTTTTGACCGCTTTTTTCTATACGCGGT
TTTCAAATTTATAACCTTCTTTGATTCCCTATCATTTTTCTGCGAAAATT
CCTTTCGTTGATTCCATGTAATTTACATTAAAAATATCAAGTAAAACAAA
CTCTGATTGGCTAAAAACCCAACAACTGATCGGTTGCAAGTGACATATTG
ACTGCTTTTACGTCACTTACAACCAATCAGCTGTTAGGTCCGTGATGAAG
ATCAGAAGACATTGCAATGGCGCATATCCTGATATCAAAATGTAGCCCAA
TTTTCGTTTTTTTGAAAAATCTTACCGAAAAGTCTGTGGAATGCTTTTTT
GAAAAACAAAAGATACCATTGCATTGAAGTGGGTAAAGTAGCGTTACTTA
GTTGAGCTCATTGCTACAAAAGAGTTGTGAAAAATGTCTCAGACCCGAAA
TCGTGCAGCACAGTAACAAAATGAGTTTCGCACAGGCTAGACTTCCCGTA
CTGGACCATTAGAAGTCTTGTGATGTCTAATTATGTCAGTGACATTTAAT
ATCTTATCGGGGAAAACTTCGTCAGGGGAAATTTTCGTCGGGGAAAAATA
TTCGTCGGGAAAAAAGATAAGGCATGATGATAAAAAAAGAAGTGACATTT
TTCTTCTTTTTCTTTTAGCTGACCTCCTTCTTCATCAGTTTGTACACTTT
TATTCTACACAACAAATCAAACGGAAAATTCCTCATGAAAATTCACTTCT
CAAAACCCTTGGTATACAGTTTATGCCTAATATTACATGGACACGTAGCT
CGATGTCTGATGTGGTTGACTGTACTCGTCGAAAGAATCCCTTTACTGGG
CGTACGTAAGGCGTTATGGGCGTTTCGAGATATTACAAGTTATGCCGAGA
CTTTCACACACGCACTTCCACAATTATTCCTTCAGATGTATATAATCGTG
CTTTATAATGGTGATTTTAATGCAATCCAATTAATTTGTTTTGTGTCGTC
ATGGTTATCGGCAGCCTGGGGTATACAGTCTCAATTTGACGGTATAAAAT
GGAAATTATTGACGTTCGAAATGAATCTGTTTTGGTTTGCATCCAGAGCT
GCGGCGACCACGATGTTAGCAAGTATCCATAAATCAGCACCATTCATCAT
GATCCTCGGTCATTTTCTCTTAATGTTTCCGTTATGGTTCTGGCAAAACA
ACTTTAAGCCATTCCGTAAAAAACGAGGCAGTAACCGATTTGAATTAATC
ATCACCGATGCATTTTACGCTGGTATTTACGCCGGTAGTAACACGGCTAC
TCCAACGACATGCAAATATCAATTCTGGTTAGCTGTTGTATTGTTTTTTG
AGAATATTCTATGTGTCATTCTTGGAATGCGATTCGGGACAGTTCAACGT
CCTCTGGAGCATTTCATTAACAATCAAATGGAATATAAACATCATAGATT
GAACTATGGCGATTTGCTCAATAGAACAGCAGGTTATTGTGTTGATACTC
CTCACTGGAAGTATAAAGTTCACTGTACAGTACCGTATAATACTTGGATT
AAATCAAGAATCACATCTTGGCTAGCCGTCGGTGTCACCGTATTTGCTTT
CATTCAGCTCGTGATTATTGTGATTCTACGGCAACGAAAAATCATCGCCG
AAGACGCCATGGTCTCCAAGCTTGGTGCTGCAAAACAGCTAAGTAAAGCT
GAAGGTAGGGTTACAGCTACTTGTTCAGAAGCTACCGAATACAATACCCG
AATGACACCGGAGCCCTCGCCGTACATGAACAGAGCATCACCCTGCGTTG
ACAAAGAATTTCATCAACCATCACTTCTGGCAATCTCCACTGACCAGTCT
TCTTTGTCAAGAGCGAAGAATCAAACATTAGATTCACCAAAACCGTTTGT
TCACCCCCGTCTCAGTGATAAACATTCATCATCTACAAACAATATATTCA
GTCAAAATAATACTAGGAATCGGAGCGAGCCGGGGGCTTCGTCGCCCAGT
CTTTCAGTCACTGTTAAGGATATCAACATTGAAAGTGTATCAGTGACGCA
AACACCATCATGTAGCCAAGCTGATATAAGACTTCATATGGATATTACTG
TAAGCCGTAAGAATAGTCAGAACTAAAGTCTATTCACGATAAGTGTGCAC
TCTTTTTTCTTTTACTTATAACTTTTGAAGGAATTCTTCAATCTTTTTAA
ATTTGGTATCATTGGAAAGATATTTGTGAGTGGAACAATTTGAAATAAAA
AAAACCTTAAAAAGATCATAAAAATGAAGATGAAAATGAAGAAGAAAAAA
ATGAAGATCTTGTAGAAAAGTGCTATGACTTTCATTTTCACTGGAGAGAT
TCCTTGATCTTAGGAGATCATCACTGTGAAGAGATTTCATTAAAATATTT
ATTCAATATAAAGTTATAATACAAAGTTAATAAGTGATTGACCCCTAAAA
ACAGCAAAAAACTGCAGAAAACAGCGTTTTTAGACGTCAATCAGCTTATA
ACATTGTTTGATATTTTTTGACTGAATGATTATTTTTGAGAATTTTTTTC
ACAGTAATGACATTCGATGATTAAGAATTCACTTCAGTGAAAATGATAGC
TATAGCATTTTTCTACAAGATCTTCATTTTTTTCTTCTTCATTTTCATCT
TCATTTTTATGATCTTTTTAAAGTTTTTTTTATTTCAAATTGTTCCACTC
ACTAATATCTTTCCAATGATGCCAAATTTAAAAAGATTGAGGAATTCCTT
CAAAAGTTATAAGTAAAAGAAAAAAGAGTGCACACTTATCGTGAATAGAC
TTTAAGTATTTGGTAATATACTATATATATACTAAAACCTTAAAACCAGT
AATTTTTGCGTCCTAAAGAACTTGTATATATTCGCTGTTGCAGATCAGCT
GTTATATTTTTAATGTAAATAAAATATAATTTTAATTTTACGAAAGAATC
TATTTATTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031276XLOC_031276Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049272-exon-scaffold_154-1575043694:423770..423946TCONS_00049272-exon-scaffold_154-1575043694:423770..423946Clytia hemisphaericaexon
TCONS_00049272-exon-scaffold_154-1575043694:422279..422595TCONS_00049272-exon-scaffold_154-1575043694:422279..422595Clytia hemisphaericaexon
TCONS_00049272-exon-scaffold_154-1575043694:420170..421628TCONS_00049272-exon-scaffold_154-1575043694:420170..421628Clytia hemisphaericaexon
TCONS_00049272-exon-scaffold_154-1575043694:419337..419490TCONS_00049272-exon-scaffold_154-1575043694:419337..419490Clytia hemisphaericaexon
TCONS_00049272-exon-scaffold_154-1510915933:423770..423946TCONS_00049272-exon-scaffold_154-1510915933:423770..423946Clytia hemisphaericaexon
TCONS_00049272-exon-scaffold_154-1510915933:422279..422595TCONS_00049272-exon-scaffold_154-1510915933:422279..422595Clytia hemisphaericaexon
TCONS_00049272-exon-scaffold_154-1510915933:420170..421628TCONS_00049272-exon-scaffold_154-1510915933:420170..421628Clytia hemisphaericaexon
TCONS_00049272-exon-scaffold_154-1510915933:419337..419490TCONS_00049272-exon-scaffold_154-1510915933:419337..419490Clytia hemisphaericaexon
TCONS_00049272-exon-scaffold_154-1491911889:423770..423946TCONS_00049272-exon-scaffold_154-1491911889:423770..423946Clytia hemisphaericaexon
TCONS_00049272-exon-scaffold_154-1491911889:422279..422595TCONS_00049272-exon-scaffold_154-1491911889:422279..422595Clytia hemisphaericaexon
TCONS_00049272-exon-scaffold_154-1491911889:420170..421628TCONS_00049272-exon-scaffold_154-1491911889:420170..421628Clytia hemisphaericaexon
TCONS_00049272-exon-scaffold_154-1491911889:419337..419490TCONS_00049272-exon-scaffold_154-1491911889:419337..419490Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:419337..423946 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0.104961	0.0356212	0.0381838	0.128067	0.0450201	0.366565	0	5.68778	3.05148	2.4201	0.576104	0	0.597134	4.71689	5.37921	2.39255	2.46277	0	0.566675	1.81491	2.26019	0	0	0.0364319	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049272 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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