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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049269 ID=TCONS_00049269|Name=TCONS_00049269|organism=Clytia hemisphaerica|type=transcript|length=728bp
cttttctagACAAATTATTTACTTAATTCGAACATTAAATGTGTAGGTAG
ATTTTCTTTGAGGCTGTAACTTCGCAAATAGCGAAAACCAATGTCTTTTG
TAATTGGATTTTCAAGGGGGAGGATGAATGGCTTTCACCTACCGTATGGA
CGGGGGTTTTGGTACAATGCTTGTGGAAGTATGTTTCCCCATAGCAAGGC
TAATGGGATTCGTCCACCAGGGGAATGTATGGGACTTTACCCTGGGAACA
GTCTCGGTATGGTATGcacaaaaacatttcaaatatttatgagaaagaaa
agatgaaaataaatcCATGAATAAAATATAAGAGATCCCGGCTCGCTGAC
ACAAACAGTCAAACAACACGTCAATCTAACGTCGATCTAACTTTCATAAC
ATCTTAAATATGACGTTAAATgtacgttaaaacaacgtttaCTACCACCT
GGGAAGAGCTTTTTTTCGCAAGAACCCTTTAGGATATTTTGCGAATCTGG
ACATTTCATGGTAAATAAAGGATATCATGAATATTTCATTTTGGAAAAGT
GCATCTTATTTTAGAATCAAAGGAGTTTGTTTTTAGATTTGACACTTTAT
TATAAATATTTAAGctttgtattttttaaggaaaattatatATGTATGTc
atgtttgtaatttttaaggaaaatcgaAATCTTTGTATTACTATTATGCA
ACTATACAAGGAAAAATAATAAATCATA Run BLAST on NCBI transcript from alignment at scaffold_154:362483..363544- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049269 ID=TCONS_00049269|Name=TCONS_00049269|organism=Clytia hemisphaerica|type=transcript|length=1062bp|location=Sequence derived from alignment at scaffold_154:362483..363544- (Clytia hemisphaerica)
CTTTTCTAGACAAATTATTTACTTAATTCGAACATTAAATGTGTAGGTAG
ATTTTCTTTGAGGCTGTAACTTCGCAAATAGCGAAAACCAATGTCTTTTG
TAATTGGATTTTCAAGGGGGAGGATGAATGGCTTTCACCTACCGTATGGA
CGGGGTAAAAACGTTTGTTCGTTTTTTCGAAAAATATAAAGAAGGCTTCG
GGAAACCACCCGAAGACTATTATCTTGGTAACGAAAACCTCCATCAGCTT
ACCAAATCAGGAGAATACGAACTTTATTATTTAACTGATGCTAGAGATAC
TCCCACCACATATCATGGTTGGTATGGTCAATTTAGTGTATCTGACGAAG
CAGATTTCTATCGATTAAGTATTGGTGATTTCAGAGAAGGCACTAATACA
CTAGCAATATCAGATAGTATGCAATTTTCAGCACATGAAGTGGGCAAAGA
TAAAGCAGGTGCATTCTGTGCATTAAATAGACAAGGAGGGTTTTGGTACA
ATGCTTGTGGAAGTATGTTTCCCCATAGCAAGGCTAATGGGATTCGTCCA
CCAGGGGAATGTATGGGACTTTACCCTGGGAACAGTCTCGGTATGGTATG
CACAAAAACATTTCAAATATTTATGAGAAAGAAAAGATGAAAATAAATCC
ATGAATAAAATATAAGAGATCCCGGCTCGCTGACACAAACAGTCAAACAA
CACGTCAATCTAACGTCGATCTAACTTTCATAACATCTTAAATATGACGT
TAAATGTACGTTAAAACAACGTTTACTACCACCTGGGAAGAGCTTTTTTT
CGCAAGAACCCTTTAGGATATTTTGCGAATCTGGACATTTCATGGTAAAT
AAAGGATATCATGAATATTTCATTTTGGAAAAGTGCATCTTATTTTAGAA
TCAAAGGAGTTTGTTTTTAGATTTGACACTTTATTATAAATATTTAAGCT
TTGTATTTTTTAAGGAAAATTATATATGTATGTCATGTTTGTAATTTTTA
AGGAAAATCGAAATCTTTGTATTACTATTATGCAACTATACAAGGAAAAA
TAATAAATCATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049269-exon-scaffold_154-1575043694:363391..363544 | TCONS_00049269-exon-scaffold_154-1575043694:363391..363544 | Clytia hemisphaerica | exon |
| TCONS_00049269-exon-scaffold_154-1575043694:362483..363056 | TCONS_00049269-exon-scaffold_154-1575043694:362483..363056 | Clytia hemisphaerica | exon |
| TCONS_00049269-exon-scaffold_154-1510915933:363391..363544 | TCONS_00049269-exon-scaffold_154-1510915933:363391..363544 | Clytia hemisphaerica | exon |
| TCONS_00049269-exon-scaffold_154-1510915933:362483..363056 | TCONS_00049269-exon-scaffold_154-1510915933:362483..363056 | Clytia hemisphaerica | exon |
| TCONS_00049269-exon-scaffold_154-1491911889:363391..363544 | TCONS_00049269-exon-scaffold_154-1491911889:363391..363544 | Clytia hemisphaerica | exon |
| TCONS_00049269-exon-scaffold_154-1491911889:362483..363056 | TCONS_00049269-exon-scaffold_154-1491911889:362483..363056 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:362483..363544 - |
Blast
The following BLAST results are available for this feature:
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