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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049254 ID=TCONS_00049254|Name=TCONS_00049254|organism=Clytia hemisphaerica|type=transcript|length=5748bpRun BLAST on NCBI protein sequence of TCONS_00049254-protein >TCONS_00049254-protein ID=TCONS_00049254-protein|Name=TCONS_00049254-protein|organism=Clytia hemisphaerica|type=polypeptide|length=822bp MYKLSIIVIIGLTIIPDLALSADKKIQIGLYNPDEDGKDRSVAATVLTAIRun BLAST on NCBI transcript from alignment at scaffold_154:153424..166920- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049254 ID=TCONS_00049254|Name=TCONS_00049254|organism=Clytia hemisphaerica|type=transcript|length=13497bp|location=Sequence derived from alignment at scaffold_154:153424..166920- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_154:153424..166920- >TCONS_00049254 ID=TCONS_00049254|Name=TCONS_00049254|organism=Clytia hemisphaerica|type=CDS|length=37035bp|location=Sequence derived from alignment at scaffold_154:153424..166920- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049254 vs. Swiss-Prot (Human)
Match: GABR2 (Gamma-aminobutyric acid type B receptor subunit 2 OS=Homo sapiens GN=GABBR2 PE=1 SV=1) HSP 1 Score: 238.424 bits (607), Expect = 4.382e-64 Identity = 173/638 (27.12%), Postives = 310/638 (48.59%), Query Frame = 2
Query: 665 NILHISFDAAGESLSVVKDYPYLFNSAPPVFLYVKALVQYLVHFNLDKIAFIHYSDQSKSFNSNKLTADRFEREAAENGINIVYVGEIRFDEFTDKSQYSSYFSNAFNAIKKNDIRVIVFSLTDEAMRTMICEAYRLGLYGSKYQFISILAEGMTSWVKEWKTVNCSEETQRFMSRNI-------IGLSRSPREKVETITEVGLTKKEIWTRIQNKMTEILSQPIPYDEWLAYVFDSVLAFALALDKILKRDPSFVENHKVGTL---DPARMNTMLNEIRQLDFIGASGRFKYKQDGDFLYRDGNIRYRKLKFKGNETKSG-LEAIGLFDKDTSKITMNFSQLYYKQIPRAGPEHIENIVLLPQSVVYTMWXXXXXXXXXXXXFLTVNIYYRDVTYIKLSSPNINSLTCIGSILLYGAVICYGFDSRYVSEHSVAYMCNITTFMLSMGFTLTFGSLFSKTWRIYRIFTRAEAARYVVIKDIHLFTVVFLMLVVDAVLCFTWMGVSPFTLTSQLLSSLRDVKADTIE-NDIIHRCQCEYQSHFIFATFAYKGILMVFGLFVAYETKRIKVAAINDSKHIGLAVYNVCLFSALGSIVVFCLYDTDRFQEGYIFFGACILEITTVTLCLVFVPKVLMLLTN 2542
N++ +SF A L+ K YPY F + P A+++ L H+ ++ + Q S N LT ++Y +I E +D +S+ + +K ND+R+I+ + C AY +YGSKYQ+I I SW W+ V+ + R + +N+ IG+ P + T G T ++ NK + + ++ Y +D + A L + ++ + + ++ D +LN + + +F G +G+ ++ +G+ R G I++ + + E K G A+ DT +I + + + P+ +E + + + + L+ LG+I++ FL NI R+ IK+SSP +N+L +G +L Y ++ +G D +VSE + +C + T++L++G+T FG++F+KTWR++ IF + + +IKD L +V ML++D + W V P T + S D I ++ C+ + + ++ +AYKG+LM+FG F+A+ET+ + + A+NDSK+IG++VYNV + +G+ V F D Q + I+ +T+TLCLVFVPK++ L TN
Sbjct: 150 NLVQLSFAATTPVLADKKKYPYFFRTVPSDNAVNPAILKLLKHYQWKRVGTLTQDVQRFSEVRNDLTG-------------VLYGEDI---EISDTESFSNDPCTSVKKLKGNDVRIILGQFDQNMAAKVFCCAYEENMYGSKYQWI-IPGWYEPSW---WEQVHTEANSSRCLRKNLLAAMEGYIGVDFEPLSSKQIKTISGKTPQQYEREYNNKRSGVGP-----SKFHGYAYDGIWVIAKTLQRAMETLHASSRHQRIQDFNYTDHTLGRIILNAMNETNFFGVTGQVVFR-NGE---RMGTIKFTQFQ-DSREVKVGEYNAVA----DTLEIINDTIRFQGSEPPKDKTIILEQLRKISLPLYSILSALTILGMIMASAFLFFNIKNRNQKLIKMSSPYMNNLIILGGMLSYASIFLFGLDGSFVSEKTFETLCTVRTWILTVGYTTAFGAMFAKTWRVHAIFKNVKMKKK-IIKDQKLLVIVGGMLLIDLCILICWQAVDPLRRTVEKYSMEPDPAGRDISIRPLLEHCENTHMTIWLGIVYAYKGLLMLFGCFLAWETRNVSIPALNDSKYIGMSVYNVGIMCIIGAAVSFLTRDQPNVQ--FCIVALVIIFCSTITLCLVFVPKLITLRTN 750 The following BLAST results are available for this feature:
BLAST of TCONS_00049254 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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