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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049244 ID=TCONS_00049244|Name=TCONS_00049244|organism=Clytia hemisphaerica|type=transcript|length=1841bpRun BLAST on NCBI transcript from alignment at scaffold_154:819835..827044+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049244 ID=TCONS_00049244|Name=TCONS_00049244|organism=Clytia hemisphaerica|type=transcript|length=7210bp|location=Sequence derived from alignment at scaffold_154:819835..827044+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00049244 vs. Swiss-Prot (Human)
Match: ZN569 (Zinc finger protein 569 OS=Homo sapiens GN=ZNF569 PE=1 SV=1) HSP 1 Score: 195.282 bits (495), Expect = 2.100e-53 Identity = 123/350 (35.14%), Postives = 178/350 (50.86%), Query Frame = -1
Query: 189 CKECGTSFTTQNELSDHQ--NNGIK-YYCGPCKRFFACKDSVKTHLQTHIVGSSQQKLIKVTLPCQNEPKDNEDSQFQCKECGKSFVSESTLKRHLKTHS--KLITCDKCSKQFTMFDFFIHNKSSECIXXXXXXXXXXXXXXFPHLRALNIHINTHTKPFSCNECGKHFSQKNAMEHHQS--TRKCSFDCKECEKSFSNKNEFGKHKRAH---KNFECKDCGKLFAFKNELVVHGNIHTGVRPYICEVCEKTFSRPDTLFNHRKIHQPSK-WNCEDCGKCFTIKRSLERHLSAHTGIKPFKCDLCGKGFTEKSSLQTHLIYHGDARPFECETCGKGFKTKHNLSWHNKT 1205
CKEC SF+ ++ L DH+ + G K Y C C + F+ K S+ H + H + + C ECGK+F ++L H+++H+ K CDKC K F+ F I +++ I+T KP+ CNECGK FSQ +A+ H T + ++CKEC K+FS+K F H++ H K +EC +CGK F + LV H IHTG +PYIC+ C K FS+ L H KIH K + C +CGK F+ K++ H HTG KP+ C+ CGK F++ +SL HL H +P+EC+ CGK F L+ H ++
Sbjct: 272 CKECEKSFSQKSNLIDHEKIHTGEKPYECNECGKAFSQKQSLIAHQKVH----------------------TGEKPYACNECGKAFPRIASLALHMRSHTGEKPYKCDKCGKAFSQFSMLI----------------------------IHVRIHTGEKPYECNECGKAFSQSSALTVHMRSHTGEKPYECKECRKAFSHKKNFITHQKIHTREKPYECNECGKAFIQMSNLVRHQRIHTGEKPYICKECGKAFSQKSNLIAHEKIHSGEKPYECNECGKAFSQKQNFITHQKVHTGEKPYDCNECGKAFSQIASLTLHLRSHTGEKPYECDKCGKAFSQCSLLNLHMRS 571 HSP 2 Score: 170.244 bits (430), Expect = 4.647e-45 Identity = 121/370 (32.70%), Postives = 180/370 (48.65%), Query Frame = -1
Query: 192 LECKECGTSFTTQNELSDHQ--NNGIK-YYCGPCKRFFACKDSVKTHLQTHIVGSSQQK--------------LIKVTLPCQNEPKDNEDSQFQCKECGKSFVSESTLKRHLKTHS--KLITCDKCSKQFTMFDFFI-----HNKSSECIXXXXXXXXXXXXXXFPHLRALNIHINTHTKPFSCNECGKHFSQKNAMEHHQSTRKCS--FDCKECEKSFSNKNEFGKHKRAH---KNFECKDCGKLFAFKNELVVHGNIHTGVRPYICEVCEKTFSRPDTLFNHRKIHQPSK-WNCEDCGKCFTIKRSLERHLSAHTGIKPFKCDLCGKGFTEKSSLQTHLIYHGDARPFECETCGKGFKTKHNLSWHNK 1211
EC ECG +F+ + L HQ + G K Y C C + F S+ H+++H G K +I V + +P ++C ECGK+F S L H+++H+ K C +C K F+ FI H + + + H R I+T KP+ C ECGK FSQK+ + H+ ++C EC K+FS K F H++ H K ++C +CGK F+ L +H HTG +PY C+ C K FS+ L H + H K + C +CGK F+ + SL H+ HTG KP++C+ CGK F++ SSL H+ H +PF+C CGK F +L+ H +
Sbjct: 298 YECNECGKAFSQKQSLIAHQKVHTGEKPYACNECGKAFPRIASLALHMRSH-TGEKPYKCDKCGKAFSQFSMLIIHVRIHTGEKP-------YECNECGKAFSQSSALTVHMRSHTGEKPYECKECRKAFSHKKNFITHQKIHTREKPYECNECGKAFIQMSNLVRHQR-----IHTGEKPYICKECGKAFSQKSNLIAHEKIHSGEKPYECNECGKAFSQKQNFITHQKVHTGEKPYDCNECGKAFSQIASLTLHLRSHTGEKPYECDKCGKAFSQCSLLNLHMRSHTGEKPYVCNECGKAFSQRTSLIVHMRGHTGEKPYECNKCGKAFSQSSSLTIHIRGHTGEKPFDCSKCGKAFSQISSLTLHMR 654 HSP 3 Score: 169.859 bits (429), Expect = 5.951e-45 Identity = 117/351 (33.33%), Postives = 164/351 (46.72%), Query Frame = -1
Query: 192 LECKECGTSFTTQNELSDHQNN--GIK-YYCGPCKRFFACKDSVKTHLQTHIVGSSQQKLIKVTLPCQNEPKDNEDSQFQCKECGKSFVSESTLKRHLKTHS--KLITCDKCSKQFTMFDFFIHNKSSECIXXXXXXXXXXXXXXFPHLRALNIHINTHTKPFSCNECGKHFSQKNAMEHHQS--TRKCSFDCKECEKSFSNKNEFGKHKRAH---KNFECKDCGKLFAFKNELVVHGNIHTGVRPYICEVCEKTFSRPDTLFNHRKIHQPSK-WNCEDCGKCFTIKRSLERHLSAHTGIKPFKCDLCGKGFTEKSSLQTHLIYHGDARPFECETCGKGFKTKHNLSWHNK 1211
EC ECG +F+ + L+ H + G K Y C C++ F+ K + TH + H + ++C ECGK+F+ S L RH + H+ K C +C K F+ I ++ I++ KP+ CNECGK FSQK HQ T + +DC EC K+FS H R+H K +EC CGK F+ + L +H HTG +PY+C C K FS+ +L H + H K + C CGK F+ SL H+ HTG KPF C CGK F++ SSL H+ H +P+ C CGK F K +L H +
Sbjct: 382 YECNECGKAFSQSSALTVHMRSHTGEKPYECKECRKAFSHKKNFITHQKIH----------------------TREKPYECNECGKAFIQMSNLVRHQRIHTGEKPYICKECGKAFSQKSNLIAHEK----------------------------IHSGEKPYECNECGKAFSQKQNFITHQKVHTGEKPYDCNECGKAFSQIASLTLHLRSHTGEKPYECDKCGKAFSQCSLLNLHMRSHTGEKPYVCNECGKAFSQRTSLIVHMRGHTGEKPYECNKCGKAFSQSSSLTIHIRGHTGEKPFDCSKCGKAFSQISSLTLHMRKHTGEKPYHCIECGKAFSQKSHLVRHQR 682 HSP 4 Score: 163.31 bits (412), Expect = 9.104e-43 Identity = 111/352 (31.53%), Postives = 163/352 (46.31%), Query Frame = -1
Query: 189 LECKECGTSFTTQNELSDHQ--NNGIK-YYCGPCKRFFACKDSVKTHLQTHIVGSSQQKLIKVTLPCQNEPKDNEDSQFQCKECGKSFVSESTLKRHLKTHS--KLITCDKCSKQFTMFDFFIHNKSSECIXXXXXXXXXXXXXXFPHLRALNIHINTHTKPFSCNECGKHFSQKNAMEHHQS--TRKCSFDCKECEKSFSNKNEFGKHKRAH---KNFECKDCGKLFAFKNELVVHGNIHTGVRPYICEVCEKTFSRPDTLFNHRKIHQPSK-WNCEDCGKCFTIKRSLERHLSAHTGIKPFKCDLCGKGFTEKSSLQTHLIYHGDARPFECETCGKGFKTKHNLSWHNKT 1211
+C CG F +L H + G K Y C C++ F+ K+ + H + H + + ++C ECGK+F+ S L RH + H+ K C +C K F+ I ++ ++ + ++T KP++CNECGK F + ++ H T + + C +C K+FS + H R H K +EC +CGK F+ + L VH HTG +PY C+ C K FS H+KIH K + C +CGK F +L RH HTG KP+ C CGK F++KS+L H H +P+EC CGK F K N H K
Sbjct: 186 FKCNHCGKGFNQTLDLIRHLRIHTGEKPYECSNCRKAFSHKEKLIKHYKIH----------------------SREQSYKCNECGKAFIKMSNLIRHQRIHTGEKPYACKECEKSFSQKSNLIDHEKIHTGEKPYECNECGKAFSQKQSLIAHQKVHTGEKPYACNECGKAFPRIASLALHMRSHTGEKPYKCDKCGKAFSQFSMLIIHVRIHTGEKPYECNECGKAFSQSSALTVHMRSHTGEKPYECKECRKAFSHKKNFITHQKIHTREKPYECNECGKAFIQMSNLVRHQRIHTGEKPYICKECGKAFSQKSNLIAHEKIHSGEKPYECNECGKAFSQKQNFITHQKV 515 HSP 5 Score: 142.124 bits (357), Expect = 1.459e-35 Identity = 74/179 (41.34%), Postives = 107/179 (59.78%), Query Frame = -1
Query: 225 PFSCNECGKHFSQKNAMEHHQS--TRKCSFDCKECEKSFSNKNEFGKHKRAH---KNFECKDCGKLFAFKNELVVHGNIHTGVRPYICEVCEKTFSRPDTLFNHRKIHQPSK-WNCEDCGKCFTIKRSLERHLSAHTGIKPFKCDLCGKGFTEKSSLQTHLIYHGDARPFECETCGKGF 743
PF CN CGK F+Q + H T + ++C C K+FS+K + KH + H ++++C +CGK F + L+ H IHTG +PY C+ CEK+FS+ L +H KIH K + C +CGK F+ K+SL H HTG KP+ C+ CGK F +SL H+ H +P++C+ CGK F
Sbjct: 185 PFKCNHCGKGFNQTLDLIRHLRIHTGEKPYECSNCRKAFSHKEKLIKHYKIHSREQSYKCNECGKAFIKMSNLIRHQRIHTGEKPYACKECEKSFSQKSNLIDHEKIHTGEKPYECNECGKAFSQKQSLIAHQKVHTGEKPYACNECGKAFPRIASLALHMRSHTGEKPYKCDKCGKAF 363 HSP 6 Score: 114.39 bits (285), Expect = 2.328e-26 Identity = 88/288 (30.56%), Postives = 135/288 (46.88%), Query Frame = -1
Query: 435 QIQNVYQFIKRPNAKECLECKECGTSFTTQNELSDHQ--NNGIK-YYCGPCKRFFACKDSVKTHLQTHIVGSSQQKLIKVTLPCQNEPKDNEDSQFQCKECGKSFVSESTLKRHLKTHS--KLITCDKCSKQFTMFDFFIHNKSSECIXXXXXXXXXXXXXXFPHLRALNIHINTHT--KPFSCNECGKHFSQKNAMEHHQS--TRKCSFDCKECEKSFSNKNEFGKHKRAH---KNFECKDCGKLFAFKNELVVHGNIHTGVRPYICEVCEKTFSRPDTLFNHRKIH 1262
Q+ N+ + + ++ CKECG +F+ ++ L H+ ++G K Y C C + F+ K + TH + H + + C ECGK+F ++L HL++H+ K CDKC K F S+C LN+H+ +HT KP+ CNECGK FSQ+ ++ H T + ++C +C K+FS + H R H K F+C CGK F+ + L +H HTG +PY C C K FS+ L H++IH
Sbjct: 449 QMSNLVRHQRIHTGEKPYICKECGKAFSQKSNLIAHEKIHSGEKPYECNECGKAFSQKQNFITHQKVH----------------------TGEKPYDCNECGKAFSQIASLTLHLRSHTGEKPYECDKCGKAF-----------SQC-------------------SLLNLHMRSHTGEKPYVCNECGKAFSQRTSLIVHMRGHTGEKPYECNKCGKAFSQSSSLTIHIRGHTGEKPFDCSKCGKAFSQISSLTLHMRKHTGEKPYHCIECGKAFSQKSHLVRHQRIH 684 The following BLAST results are available for this feature:
BLAST of TCONS_00049244 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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