TCONS_00049241 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049241
Unique NameTCONS_00049241
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length682

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049241 ID=TCONS_00049241|Name=TCONS_00049241|organism=Clytia hemisphaerica|type=transcript|length=682bp
AGAAGATGTGAAAGATATCATGCGAAAAATGAAGCATGCCAAGGCCAGTT
TGGGTCAAGGTTTAGGTTTAGCTGTCAATCCCATGCAGTATCAATATCAA
TCGAGAGGTAGATCGCCCTCGGATGTTGGCCCTCCTCGCCGTCAAGACTC
GTATACGAAAAATCGTGTTGCTCAAGTCAGAAGGCCTGGTAACCCATACG
GCAGTCAATCTTATCAGAATGATGGACGATATGGGCTTTATTATGGCGGT
CGTTCTCGACGCCATCGTGCCAAGAAACCCACTGTTTATAAaacgaaaat
ctttttcaaagacGGTAAATTAACAGACTCGAATGGTCAGAAACTGAATT
TAACGGTTGGCGATAAAGCGATATTGATTCATTATTATCCGTTGTTTGGG
ACGGCTACTTATTATCTAGCAACCCCAACGATACGCCGCTCTATGTGGAA
ATACAAGACTTTCTTGTCTAAATGTCGGACTGAAGGAAATCTACCCTTAT
TTTCCGGTGTAGCCGTTGGTGTTGTTAACGAATACATGAAAGCAGTcaag
aaaaaacataaaagTAAATACAAGTTGAAGAAGATAGTGAATGTGGAAGA
AAACCATGACGTATTACGTGGTGATCGTTATCTTATCGAAATAgaattat
CAGTGGAAAATGAAGGACACACTGTATAAGGG
Run BLAST on NCBI

transcript from alignment at scaffold_154:781327..785243+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049241 ID=TCONS_00049241|Name=TCONS_00049241|organism=Clytia hemisphaerica|type=transcript|length=3917bp|location=Sequence derived from alignment at scaffold_154:781327..785243+ (Clytia hemisphaerica)
AGAAGATGTGAAAGATATCATGCGAAAAATGAAGCATGCCAAGGCCAGTT
TGGGTCAAGGTTTAGGTTTAGCTGTCAATCCCATGCAGTATCAATATCAA
TCGAGAGGTAGATCGCCCTCGGATGTTGGCCCTCCTCGCCGTCAAGACTC
GTATACGAAAAATCGTGTTGCTCAAGTCAGAAGGCCTGGTAACCCATACG
GCAGTCAATCTTATCAGAATGATGGACGATATGGGCTTTATTATGGCGGT
CGTTCTCGACGCCATCGTGCCAAGAAACCCACTGTTTATAAaacgaaaat
ctttttcaaagacGGTAAATTAACAGACTCGAATGGTCAGAAACTGAATT
TAACGGTTGGCGATAAAGCGATATTGATTCATTATTATCCGTTGTTTGGG
ACGGCTACTTATTATCTAGCAACCCCAACGATACGCCGCTCTATGTGGAA
ATACAAGACTTTCTTGTCTAAATGTCGGACTGAAGGAAATCTACCCTTAT
TTTCCGGTGTAAGTATATTGTATACAGGTTTTGACTAAGTTACTCAACTA
AATTACCATTTGGGGAGAAAATATTGGAATCGCGTAAGGGATTGCctcaa
aaacaaaactaaaatattTCTTCCTTAATGACAGATCTTTTATAACAATT
CTGAAACACTTGCATACCCCCCCCCCTAAGTAAACCGCTTTTAGATATTA
CTTTTGGgtctttttgaaaatccttttaaaGTTTCCATTTTGAACCACTT
GAATGGACTTGTGTACTTTCTTGGGGTCGGGTAAAGTGAATTTTCATGTC
TCATCTTGTCTTTATTCATCCTGAGATtatgttctcaaattttttttttt
tttttttgaatgtgaAGTCGGAATTTCTTGTCACGtgacaaataaatttt
caacatccAATGAATTTATACTTGTTATACATGTTCTCAAAATTGCGTGT
TTTTGCTTATAAATAACAATGACATATGCACaaacaaatttcttttccat
AGGTAGCCGTTGGTGTTGTTAACGAATACATGAAAGCAGTcaagaaaaaa
cataaaaggTATAATTAATTTTCTATATTATAAGCAATGTTACGTAATAA
ACAGTACTGGATATCAATCACTACAAATAGACCTTGtcggagtttttaat
ttttctaaaaaagcgatgtattgtgggattgtttcgaggaGGAATCGTTG
ATAAAGCGTACCAAGGGTCTTGATTAGCCTGTACCACCTCAGTGCAAGCG
AAACAGCTGATTTCTTACCTCGCAACCTTTAGGGAAAAAAGGGGCAGAGA
AGGTTTTGAAacgaggcccggaattcccgagttattttttccgagttaaa
aaaaccgacttaaaaaaaaccgagttaccccgagttatgacgtcattttt
ggaatttagtgacgtcatttttcatttcataactcggtttattttgcttc
ccttaactttccgagttattttccattcttaactcgggaatttttgcttc
ctttaactttccgagttattttccattttttaactcgggaatttttgctt
ccttcaactttccgagttatttttgaatttttaactcgggaatttttgct
tcctttagctttccgagttatttttcttcataaaaaaacaccagttttaa
tctattgatcccataccaacctaaatcaaagacataaccatccattacca
actagaaaaaccttaacctgcttaataaaatgaataatcaacaaacacgt
gaataattgaaaagcaagaactgaagttaaaacctgctagataaacaaag
tgtaagcccttcaaaaatattacagcatagataaaatctcaaaaaataca
acagttaagtgatgagataaagctatttcaaaatttatatttcctCCCTA
TTTCATTAGAATACTGTAAGTGACATGACAAGATTCTCAGAAAAATTCAC
CGAgtccttcccccttcgctgtaaaaattttgaatgaatcacCAACGATT
TTTGAATCAATCATTTCACAGACAATTCGTAGATTTTTATGAgagatgtt
aaaaaataaataaataaaactgtCCAGAGTGCACACACTCACCAAATCAA
CTtacagaaaaacattcgaaagtttcTCGCGCGCGTGTGACCtttgcaaa
acattcgaattatgaatcgaatctttttgtgtcataaggctctaattaga
ctTGCGGTAAAAAACATTCCGGGGGTCAAATAcgctaatttttcaaaatg
gaaagTCTTTAAATGTTGACCTGTAGGTATATTGTTATTCGAATGTTAAC
CCccgtctttttataaaaataattcgaacATCAAACCCCATTCTGCGCAA
TGTGAAGTGAAAGAtactggaaaattttacttaagcaACGAGGAAACTGC
TACTCGAGTTTTTTGTCACTCGTTGTCACACGTACAAAGAATAAACGTAA
CGTAAGCGAATGAATGAACACCAAATTTTCGTAAGGTCTTaggtaaaatt
ttacgtgcatgtgagaaaatttttagaaGCAGAAAAGTCGCCCTTGGCTT
GGCACATCCCtgtgttattgaaaaacaatggaGGGATCGTGTAAGACCCG
TTCGGCTTTATAGAAGCCCCGgggatactagggttgcgagctgacgggta
tgtgccgcaaaaatcgagaaaaaaatgatttttcgggattttgtgaccct
tattggaacttttggctgtttttacaagccaaaaaaaaaatggaaaataa
ctcggaaagctaaaggaagcaaaaattcccgagttaaaaattcaaaaata
actcggaaagctaaaggaagagAAAATTCCCGAGTTAAAAAATGAAAAAT
AACTCGGAAAGTTAAAGGAAGCAAAACTTcccgagttaaaaaatggaaaa
taactcggaatgttaaaggaagcaaaaattcccgagttaaaaaatggaaa
ataactcggaaagttaaaggaagcaaaaaacccgagttaaaaaatggaaa
ataactcagaaaattaaaggaagcaaaataaaccgagttatgaaatgaaa
atcgacgtcactaaattccaaaaatgacgtcataactcgggataactcgg
gtcttttttaactcggtttttttaactcggaaaaaataactcgggaattc
ggGGCCTCGTTTGAAACAGGCTAGGCTCGAGGTAAGAGTATGTACTCGGT
CGAATCGTAAAATATTgtttttcgtttgtttttttaCAGTAAATACAAGT
TGAAGAAGATAGTGAATGTGGAAGAAAACCATGACGTATTACGTGGTGAT
CGTTATCTTATCGAAATAGTAAGTGTTCAACAGTAAGTGTTCAAGGATTG
TTGTTTAGTCTAGCATGCCAGACGATTGGATTTGGAAGAGAGGGTAGTAT
GGTCAAAGGCCCCGGTGAGACGTTTGAAGTGGGGtggtcaaaacttttga
aacatttttcagtttttgcgcCTTGTAAACACCTTAAAACGCTTTTTAGT
TGGATAAAGCAGGATTTGGACTTTTTAGACTGCAAAATATTCGGTTGGTC
ATGCCCCTAGTATTTCATCGCTTCAGATTTCTTTTAGAAATATAAATATA
TCTAGCCTTTCCCACTCTTAATGCTCTTACCACGGTCGATTTTTGCAGGC
TTTTTTCCTGCGAAGAAGAATTtggtaaatttttcttttttttcaggaat
tatCAGTGGAAAATGAAGGTAagtgcattttttattttcctttgaTTGTA
TTAATACACTCAAATCAACATTAGCGTCACTACAGCGTGTCCCAAAAAAG
CGGACGAATTTATATAAAGTAAATTTCTCATTATTTATTTCAACTACGCG
GTTTAGAtataggattttattttatataaagATTTGTCCGCTTATTTCAG
GACACACTGTATAAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031264XLOC_031264Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049241-exon-scaffold_154-1491911889:781327..781834TCONS_00049241-exon-scaffold_154-1491911889:781327..781834Clytia hemisphaericaexon
TCONS_00049241-exon-scaffold_154-1510915933:781327..781834TCONS_00049241-exon-scaffold_154-1510915933:781327..781834Clytia hemisphaericaexon
TCONS_00049241-exon-scaffold_154-1575043694:781327..781834TCONS_00049241-exon-scaffold_154-1575043694:781327..781834Clytia hemisphaericaexon
TCONS_00049241-exon-scaffold_154-1491911889:782329..782384TCONS_00049241-exon-scaffold_154-1491911889:782329..782384Clytia hemisphaericaexon
TCONS_00049241-exon-scaffold_154-1510915933:782329..782384TCONS_00049241-exon-scaffold_154-1510915933:782329..782384Clytia hemisphaericaexon
TCONS_00049241-exon-scaffold_154-1575043694:782329..782384TCONS_00049241-exon-scaffold_154-1575043694:782329..782384Clytia hemisphaericaexon
TCONS_00049241-exon-scaffold_154-1491911889:784566..784644TCONS_00049241-exon-scaffold_154-1491911889:784566..784644Clytia hemisphaericaexon
TCONS_00049241-exon-scaffold_154-1510915933:784566..784644TCONS_00049241-exon-scaffold_154-1510915933:784566..784644Clytia hemisphaericaexon
TCONS_00049241-exon-scaffold_154-1575043694:784566..784644TCONS_00049241-exon-scaffold_154-1575043694:784566..784644Clytia hemisphaericaexon
TCONS_00049241-exon-scaffold_154-1491911889:785023..785044TCONS_00049241-exon-scaffold_154-1491911889:785023..785044Clytia hemisphaericaexon
TCONS_00049241-exon-scaffold_154-1510915933:785023..785044TCONS_00049241-exon-scaffold_154-1510915933:785023..785044Clytia hemisphaericaexon
TCONS_00049241-exon-scaffold_154-1575043694:785023..785044TCONS_00049241-exon-scaffold_154-1575043694:785023..785044Clytia hemisphaericaexon
TCONS_00049241-exon-scaffold_154-1491911889:785227..785243TCONS_00049241-exon-scaffold_154-1491911889:785227..785243Clytia hemisphaericaexon
TCONS_00049241-exon-scaffold_154-1510915933:785227..785243TCONS_00049241-exon-scaffold_154-1510915933:785227..785243Clytia hemisphaericaexon
TCONS_00049241-exon-scaffold_154-1575043694:785227..785243TCONS_00049241-exon-scaffold_154-1575043694:785227..785243Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:781327..785243 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.457728	0.0596593	3.87005e-07	0	3.22048	2.25016	5.89446	3.09323	3.4722	6.09239	5.54541	0.109434	2.927	2.12963	6.18633	2.30012	1.99711	3.20744	0.99616	1.24128	2.71803	3.20814	8.4867e-09	0.0167617	0.521402	0.00195152	1.19965	1.07838	0.802804	0.156721
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049241 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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