TCONS_00049240 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049240
Unique NameTCONS_00049240
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2381

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049240 ID=TCONS_00049240|Name=TCONS_00049240|organism=Clytia hemisphaerica|type=transcript|length=2381bp
gaaGTGTAAATAATGTCCTATAGATTATAAATAATCACTAGAGAAATAAT
GAATGAATCAGCAAGATTATGGCAAGGTGTTATATGGTTTTGCGGATtgt
ctttgttttggttttgattgCAAGTTTTATTGCTATTATTTATATTAGTA
AACCTATCACCCAAGATGAATTATTAGGAAGCAAAATTCGAAAAgCATCG
AAAAGACATCAGAACTCAGACGATCATGAGATATGGATGCAAGAGATTGA
TTTACTTGTCAAACAATACCAAACTAAAAAAGAGCCTGACCtgAACAATC
CATTTGAGCCGGTCCATGATGTGGagtttaaaattgaaaactgGGATTTT
CCGACAGAGTTTACACCAGAGAAGACAGAAACCAGCGTTCCGCCAGTAAA
AGAGCGCCAAAAAGCACATTATAAACAAAATGATCACGTGGAAATGAAAC
CGTCAGAATCAGTTaaTGGCTTCTTGAACGTGCACTTTTGGGGTAGTTTT
TGTGGCTCACGTATTGAAGATTTGAAACGAAACATTCATTTCCCGTACTA
TCCATCCGAAGTATCAAGCCTTACCAAATTTTATATACAACGATATGAGA
CTGGTTATGGACAAAGAATCTTTGGATATCTACATCCACCAGAATCAGGA
GAATTCACGTTCGCTGTTTCATGTGACGACAATTGTGAGGTCTGGTTAAG
CTCCTCTGACAATCCAAACAACATGAAACTAATTGCCAGCGTTGGTACCT
TCAAAGACCCTGCCAATACAAAAATTGCTGATTTCCAAGCTTATCCTTCA
CAAATCTCAAAACCGATTCTattaaacaaaaacaataaatactATGTAGA
AGTGTTACACAAACAAGGAGCTTACAAAGACCATGTACTGTTAACCTGGC
TAGCTCCAACTTGGGATCACATCCGAACTATAAATGCTAGTTACATTTCA
AGCTACATCGATGTGAACGAGCAAATCCATGACGTAAACGACTATAGATA
CCTAATACCGGTGACAAAGGCATGTCAAGGTTTGGAAGATCTTGACGTCA
CCAATAGTATTTACTACTACAATCGAACACATAATTCATTCACCATGTAC
GATTATCgtgaagattttttcaaactcaaatcaGTGGATATGTCGGATTT
CACCAACTTATTACCCAGAATCCATTACAATCCGACTTACGTTTTAGACT
TTATGCCGAAGCGATATGAAGGTGTTAAATTGATGCACGAGAGCTCCATC
TATCCGTCCGATTACACTGAACTCACACATATGACTAGATATACCAATTG
TAAATCACCGCGCGAGACCGACTCTCATTATCATTATTTGGAAGGTTTTG
AACCACGCGATGATGACGAGGGATATGGGACCGACTTAGCAAGGGATAAC
TATAATGATGACTATATAGCTGTTAGGAAGAAGGTTTCACTAAAACGGCT
AAAATCTAAAGAAGGTTCTTTTGCAACAGACAATGTTGAGGATTTACGTA
AAATGAATGCAAAGTCTAAACACCATATTGGTAAAAAGGGTACAGGAAAG
TCTGGTTCTATCCAATCCAATAGAAATGAGAAGATTCATTTTAATTCTCG
TAATTTAATGGCTTTTATTGATACTCAAACTAATCAAAATTCTGGACCCG
TTTACAATAAAAGAGATAGTTTGAAAGGTACGGATTTTGGCTATAATAAA
GAAGATGTGAAAGATATCATGCGAAAAATGAAGCATGCCAAGGCCAGTTT
GGGTCAAGGTTTAGGTTTAGCTGTCAATCCCATGCAGTATCAATATCAAT
CGAGAGGTAGATCGCCCTCGGATGTTGGTCCTCCTCGCCGTCAAGACTCG
TATACGAAAAGTCGTGTTGCCCAAGTCAGAAGGCCTGGTAACCCATACGG
CAGTCAATCATATCAAAATGATGGACGATATGGGCTTTATTATGGCGGTC
GTTCTCGACGCCATCGCGCGAAGAAACCCACTGTTTATAAaacgaaaatc
tttttcaaagacGGTAAATTAACAGACTCGAATGGTCAGAAACTGAATTT
AACGGTTGGCGATAAAGCGATATTGATTCATTATTATCCGTTGTTTGGGA
CGGCTACTTATTATCTAGCAACCCCAACGATACGCCGCTCTATGTGGAAA
TACAAGACTTTCTTGTCTAAATGTCGGACTGAAGGAAATCTACCCTTATT
TTCCGGTGTAGCCGTTGGTGTTGTTAACGAATACATGAAAGCAGTcaaga
aaaaacataaaagTAAATACAAGTTGAAGAAGATAGTGAATGTGGAAGAA
AACCATGACGTATTACGTGGTGATCGTTATCTTATCGAAATAgaattatC
AGTGGAAAATGAAGGACACACTGTATAAGGG
Run BLAST on NCBI

transcript from alignment at scaffold_154:773156..785243+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049240 ID=TCONS_00049240|Name=TCONS_00049240|organism=Clytia hemisphaerica|type=transcript|length=12088bp|location=Sequence derived from alignment at scaffold_154:773156..785243+ (Clytia hemisphaerica)
gaaGTGTAAATAATGTCCTATAGATTATAAATAATCACTAGAGAAATAAT
GAATGAATCAGCAAGATTATGGCAAGGTGTTATATGGTTTTGCGGATtgt
ctttgttttggttttgattgCAAGTTTTATTGCTATTATTTATATTAGTA
AACCTATCACCCAAGATGAATTATTAGGAAGCAAAATTCGAAAAggtatc
ttttttgaaaaacttttacttTACAGATaagttgaattttgaaattcaat
ttttggaaaCAAATTACTCAATTCTAACGAGCGTTATTCAAAGGAGGATT
ATCCAAAATAGTGGCCCAAGTACATTCTTTAATTCTAACAGACCTCTTTT
GGTACAATACCTCATTTAAGCCTGTTTGATACATTTTAAAGCCTTTATCA
TTCTAACATTTCTTCCTagtgcaaaaaaaggaaaattaaatgaagaaatt
ttgaactttgttTTATAATTTGTAACATATTCAAGTTCAAGTTAAGTATA
TTAATCACATAATACCTACATCATCATAATTAATATCAATGATTGTTGAG
CTACAATAATGGTTCACCAAAACAAAATAGTCAGATTGTTAAATCTGTTA
TGTTGGTTTGCCAAATCCTGGGTTTGGTGAACAAAGAATACACAAGAAAG
ACTGTTGGTCCCCTCAGCGgaacatttttttcagatttcacGCGCTCGTG
CCTAAAAATTGATCACCTGTGAGAAAATGAATatttaaatgaaataaata
caCACTGGTAATTTCGTAGTCTCACTCCATGTCTATGTGCAGAGTGGTCT
AAATTTTAGTGACCAAAAAGGAGCAACCATTTAAAACGTCTTGATTTTTG
TCCTTTAAATATGCTTCGAAATGAACACTTTGCTTTCAAAAAAAGCTGGG
TGTAGCCGGCCAGGACCAGTCTTTGCTAgtgatataaataaaaaatacgt
AGGTACTAAAGTGAATATAAGGAAAATGTGTTACAATTTAAGTTTAagct
atatattttttaatgtgaCCTGCATACCAGCTGGCCCGCATGTTGGGgca
gaaaaaaagaatttgaaattggACCCTCtagaattaaaaaataaataaaa
ataggcATATATTTCTGTTCACATGATGATTGTGGTTTTCACAATCACGC
CAAACTGTTAATAACGCCATTTCGCCGTAAAAATCTTGTTCTCAGGACTA
CCCAATAAATTCATTAATTTTCTCACTGTTACGCCATATCGTTCAAATAC
TCAACAATTTGGCCACTTTGAAATCTTCAAACGGCCGTTTCAAAATCGGT
TCCAGGTATTCCACAGTAAAAGGGTCTTAAAAATGAGATggttataattt
taattttatctttttgaaaatcttaaagAATAAGATATAAAAGACAGTGC
TGACTGAAGCATATTAGCACAGTCTATCATTCTAATCATAAGCCCTGCAA
GGGATACAAGCTATCCTTTAGGATCGAAAATAAAGCCGCTTATTTCTGCT
TATTTCGAAAAATTTAccactggaaaaaaagaaaaccacTAAGTTTAGTG
TCATAtcggtttcactttttcttgctggGGAAAGATATAAGAATAGCTTT
TAACACCTTAAAGGCTTTCAGAAAGCAGTGGCCGCCTttttttgctccgg
cctaggagcctttagttctctcttccgacaatggtcaagacattttttgt
ctgtttatctAATCCAATGATCTATTTCGATTTAACAAAAACGGATCACT
GATTCcgataatactgtgatttgattggccgaaaagtatttagaaaaaga
tggctgccgaaagtggactactagctgactgtgtagcaaatactggcaaa
tctcagtgaaaaattgatcattttcatccttattcaagtttgatgcatac
tggctctctaacaatgtggaaagactttggagaaattttggccttGAATC
TTTTGCTGATCGAGTGTTTATAATGCATATAACTAttatggctaacttct
ctacTAGACacacaaaaccaaaaaactctGTTTTTTCAAGATTGATGGAA
ACTTTTTGAGAGCAAACTATTAATATATTTGAATTCAGTATACTACTTGT
GTGTAAATTTGAGTAAGATTGGTGCATTTCTCATGATTTTATGCTGTAAA
AATGAtctatttttgacttttggtcatttttcatgatgatataAATGGTG
GTTGTCCCTTTTGGATTTTtgaaacttgacaatgaaactttcaaacacac
agccattgaaaatcaaaagagaatactaaattACAATTACAGTGTAAATT
CTAAAACGATCTGAgtattttttgtggtgttatgtatggctgaaaatgat
cctgttttggactttgttattgTCGTATTCATCATCGGCtagcgaccgtt
ccttttgatttttcaaacccgacacagattttttacaaacatatcactat
gagaattcaataaaggatactgaaacacagttcctgtgtaaattttaaca
agcttggagaaattttcacagtcagacctagtgttatggctgaaaattat
catttttggactttgttgtaatttcatcgcggctttgtgaccattccttt
tgattttcgAGCCCGACACAGATTCTTTCCAAACATACCACTGTaggaat
tcaataaaggatactaaaacacaaattcctgtgtaaatttgaacaagatc
ggagaaattttcacagtattgtGGCTGAAATgatcattttttggactttg
tcgtaatttttAAGGGCTTgctgggcgaccgttccttttgaagatttttt
aaaccggacacaggttttttccaaatatactacaattacatacacactat
cgcaccattttatttgatttatccTAGCCttctccaagtattatcccaac
agaataatgcttagctaaaagccgtagcctctaatttaggctatttttct
cccggtccggacaatcaaatcaacgggcGCATCATGGCTTGGCTATTGGC
tagtttagaaaaatataaatttataagaacttggaaatattgacttctaa
aagTTTATCTCCTTTAGATCCAATTTTGTCCTTTTTAGTCGGGGGATGAG
TGGGGGGGGGTTGGCACTTTAGGCAAGAAattgcatgtgtaatcacttag
aagagctaaacttccagctggtttagtTATTCATAAAGATTATTTCCCAT
ACTCGCTCTACAATAAAATTCAACAAACTCATtcttcacatcttttaatc
tcttaagccggagcttccagcgcagctggtttatttttattataactGGT
GATTGAAAGAAACTCACAGATACACTACGAACAAAACAATAAAGCACTAC
TAAACATAAATATAGGCTCTTTCCAGAGGTACAAAACTATAGTTCTTTTT
AATAACAATAGAATGAAATAAAACAGTCTTTTAAGAAATTCAATTGAGAG
TATGTTCTGTTGAAGAATTTGAAGGACAATATGTGTAATAATGTGATGCC
GACCCACGTCTAGGTCGACACCACACTATTAACGGGTGGAGGACTAGTCC
AAACATCAAACAGAGAAGGGGAAACTGTACGTATTTCTGTGCCTACTATA
TACTATCTTACATTCTAATGAACTCTTACCTTACACTCAGAAACCACCGT
TCCATGTTAGGTCCGAAACTAGACTCCCAGATTAGGCGATCTGAGCAAAG
CAAAACACTTTCAAGTTCACTCAACCGTAAGGAGGGCGTTACTGGCGTAA
AGGGTGGTTTCTGGGCGTAGTACAGAGGCTATATAATTGCCTCTGTACAT
ATGTATTGTCCGAGACAAAAACCGCGTTGAGAATCTTTGATTCGGATGGC
CGCTTTTTGCATCAAATGTTATGCGAGTCGTTATCACAGCAGATCGGTTT
CTTTCCATAACTTCCCATCGAACAGCACTTAAGGAATATTGTATTGCTAC
AATTGAACTCGACAGcaaagaaacttgttttttcttttcctgcTATAATG
AGCCTGAAACTTCTAGCAGAATTCATCAATTTTGACCGAGTCACAACAAA
AACTTACTGTTTTATATTCAACAGggtgcatttatcaaaaatattgttCA
CGCCTTATCGACGTCAAACAAGAATTGACTAAGGATAAGACAGCATTCCA
ATTGTACGATGCGTGCTGATGGttgttttttatcattattttagtATACT
TTTCTTTTCTTAGCATCGAAAAGACATCAGAACTCAGACGATCATGAGAT
ATGGATGCAAGAGATTGATTTACTTGTCAAACAATACCAAACTAAAAAAG
AGCCTGACCtggtaaaaaaattttgtctGTATTAAAACATGCTTTCAACC
TGTTTCAAATGATTGTCTTAAGTGCTTGAATACTTAAACTTAGAATATTT
TCATTGAAACGCTGGTGCAAATTATCAGAAAAAAATGTCCTTTTCTCCAA
TCGAATTGAAGATCCACATCATCGAAGCAGATTGACAGGAAGCTGTAAAA
TCTTATAccacaaaaagttgaaaagactGATATTTATTATCCAAACTGCG
ATAGGACTTTATGCCAATGGGGACGAAAATCACTTTTTATTATTGATGGG
GTTTTAAATTTCTAGCGTTTACAGCTCAAAAGATTCAATAAGGATGGAAT
TATGGGCTTTGTTTTATGTCAATCCATGGGTTTGAAGAATCACTTGTCTT
TAAAGGGGTTGAAGTCCTCGCTGTTTTTCCCAGTGGAAGAGTTGGTAGCT
GTATTTTCCTAAAAAGGATGGAGTTCCAGGGTGGCTTTTGCTGATTCTGG
GTATGTAATATGGGGAAGTATTGAGTGTAAACTATTCTAAACTGTACCGT
CCTACTGGAATAATATCCTGATCTCATTGCGATTTTATATTACAGAACAA
TCCATTTGAGCCGGTCCATGATGTGGagtttaaaattgaaaactgGGATT
TTCCGACAGAGTTTACACCAGAGAAGACAGAAACCAGCGTTCCGCCAGTA
AAAGAGCGCCAAAAAGCACATTATAAACAAAATGATCACGTGGAAATGAA
ACCGTCAGAATCAGTTGTAAGTTTTTTAAcaagacaatttttttctcaat
aataTGTATTCAGAGCATTAGATAAAGCTTACTAAAAACTTACTAAAAAG
GAGCAAATAGTCCAGTTTTTTTGGAGGGATTTAAACTTTTGATCTTAAAA
ATAAtatatgaaaaatctgaaaactgattttgaagtcagtaaaaaaaagt
gaattattattttttggttCCAGTAGaaagtttaatttttgaaatatctt
ccCTAGAGGTATTATTGTTGAAACtatatctttttctttcaaCTGGAAAC
GAGGAAATAGAATTTAtaaatagaacttttcaaaattatagtttaagggg
ggggggctctatCTCTCTTGGTTCCATTTCTCTATTACCAGATAAGGCCA
GTTAGATAAACCTTTTTCTATTATTTGCATGTCTATAGTGAAATAATATT
TATTAATAAGACagtgaatttttcatagaaTGGCTTCTTGAACGTGCACT
TTTGGGGTAGTTTTTGTGGCTCACGTATTGAAGATTTGAAACGAAACATT
CATTTCCCGTACTATCCATCCGAAGTATCAAGCCTTACCAAATTTTATAT
ACAACGATATGAGACTGGTTATGGACAAAGAATCTTTGGATATCTACATC
CACCAGAATCAGGTATAATTAAATTAAGTTATGTAATTTTTGCTACTTCC
GTCAGTGATCACCCCTACAGAAcatttatttccataatggtagaAATTAC
GTAACTTGGCAAATCATGAAAAATCTATATCCATCCATACATTTTGATAT
TTATATAGAAGGGTCCGAAAACAGGGAAGTTGAATCTAATCTCAATCGCA
GAAACCTAAAAGGGGCTTGATATACAGAGCGCAAAACTAAAGGCGGTTTA
tagacaaaaacttttttcatgatcTTAACTATTCGAAGATTTTAGGCAAG
AAAATCCAAAGACGTAGGGAGGGATCTTGTACTAATTTTCATAATTGACG
AATTCTATTTCAAATTTCAGGAGAATTCACGTTCGCTGTTTCATGTGACG
ACAATTGTGAGGTCTGGTTAAGCTCCTCTGACAATCCAAACAACATGAAA
CTAATTGCCAGCGTTGGTACCTTCAAAGACCCTGCCAATACAAAAATTGC
TGATTTCCAAGCTTATCCTTCACAAATCTCAAAACCGATTCTattaaaca
aaaacaataaatactATGTAGAAGTGTTACACAAACAAGGAGCTTACAAA
GACCATGTACTGTTAACCTGGCTAGCTCCAACTTGGGATCACATCCGAAC
TATAAATGCTAGTTACATTTCAAGCTACATCGATGTGAACGAGCAAATCC
ATGACGTAAACGACTATAGATACCTAATACCGGTGACAAAGGCATGTCAA
GGTTTGGAAGATCTTGACGTCACCAATAGTATTTACTACTACAATCGAAC
ACATAATTCATTCACCATGTACGATTATCgtgaagattttttcaaactca
aatcaGTGGATATGTCGGATTTCACCAACTTATTACCCAGAATCCATTAC
AATCCGACTTACGTTTTAGACTTTATGCCGAAGCGATATGAAGGTGTTAA
ATTGATGCACGAGAGCTCCATCTATCCGTCCGATTACACTGAACTCACAC
ATATGACNCGTGAAGTTAATGCACGAGAGCTCCATCTATCCGTCCGATTA
CACTGAACTCACACATATGACTAGATATACCAATTGTAAATCACCGCGCG
AGACCGACTCTCATTATCATTATTTGGAAGGTTTTGAACCACGCGATGAT
GACGAGGGATATGGGACCGACTTAGCAAGGGATAACTATAATGATGACTA
TATAGCTGTTAGGAAGAAGGTTTCACTAAAACGGCTAAAATCTAAAGAAG
GTTCTTTTGCAACAGACAATGTTGAGGATTTACGTAAAATGAATGCAAAG
TCTAAACACCATATTGGTAAAAAGGGTACAGGAAAGTCTGGTTCTATCCA
ATCCAATAGAAATGAGAAGATTCATTTTAATTCTCGTAATTTAATGGCTT
TTATTGATACTCAAACTAATCAAAATTCTGGACCCGTTTACAATAAAAGA
GATAGTTTGAAAGGTACGGATTTTGGCTATAATAAAGAAGATGTGAAAGA
TATCATGCGAAAAATGAAGCATGCCAAGGCCAGTTTGGGTCAAGGTTTAG
GTTTAGCTGTCAATCCCATGCAGTATCAATATCAATCGAGAGGTAGATCG
CCCTCGGATGTTGGTCCTCCTCGCCGTCAAGACTCGTATACGAAAAGTCG
TGTTGCCCAAGTCAGAAGGCCTGGTAACCCATACGGCAGTCAATCATATC
AAAATGATGGACGATATGGGCTTTATTATGGCGGTCGTTCTCGACGCCAT
CGCGCGAAGAAACCCACTGTTTATAAaacgaaaatctttttcaaagacGG
TAAATTAACAGACTCGAATGGTCAGAAACTGAATTTAACGGTTGGCGATA
AAGCGATATTGATTCATTATTATCCGTTGTTTGGGACGGCTACTTATTAT
CTAGCAACCCCAACGATACGCCGCTCTATGTGGAAATACAAGACTTTCTT
GTCTAAATGTCGGACTGAAGGAAATCTACCCTTATTTTCCGGTGTAAGTA
TATTGTATACAGGTTTTGACTAAGTTACTCAACTAAATTACCATTTGGGG
AGAAAATATTGGAATCGCGTAAGGGATTGCctcaaaaacaaaactaaaat
attTCTTCCTTAATGACAGATCTTTTATAACAATTCTGAAACACTTAGTT
ACATACCCCCTAAGTAAACCGCTTTTAGATATTACTTTTTGGTCttttta
aaaatccttttaaaGTTTCCATTTTGAGCCACTTGAATGGACTTGTGTAC
TTTTTTGGGGTCGGGTAAAGTGAATTTTCATGTCTCATCTTGTCTTTATT
CATCCTGAGATTATGTTCTCCAAATTGTGTGTTTTCGCTTATCACAAACA
AATTTCTTTTCCGCAGGTAGCCGTTGGTGTTGTTAACGAATACATGAAAG
CAGTcaagaaaaaacataaaaggTATAATTAATTTTCCATATTATAAGCA
ATGTTACGTAATAAACANTAAAGAAGATGTGAAAGATATCATGCGAAAAA
TGAAGCATGCCAAGGCCAGTTTGGGTCAAGGTTTAGGTTTAGCTGTCAAT
CCCATGCAGTATCAATATCAATCGAGAGGTAGATCGCCCTCGGATGTTGG
CCCTCCTCGCCGTCAAGACTCGTATACGAAAAATCGTGTTGCTCAAGTCA
GAAGGCCTGGTAACCCATACGGCAGTCAATCTTATCAGAATGATGGACGA
TATGGGCTTTATTATGGCGGTCGTTCTCGACGCCATCGTGCCAAGAAACC
CACTGTTTATAAaacgaaaatctttttcaaagacGGTAAATTAACAGACT
CGAATGGTCAGAAACTGAATTTAACGGTTGGCGATAAAGCGATATTGATT
CATTATTATCCGTTGTTTGGGACGGCTACTTATTATCTAGCAACCCCAAC
GATACGCCGCTCTATGTGGAAATACAAGACTTTCTTGTCTAAATGTCGGA
CTGAAGGAAATCTACCCTTATTTTCCGGTGTAAGTATATTGTATACAGGT
TTTGACTAAGTTACTCAACTAAATTACCATTTGGGGAGAAAATATTGGAA
TCGCGTAAGGGATTGCctcaaaaacaaaactaaaatattTCTTCCTTAAT
GACAGATCTTTTATAACAATTCTGAAACACTTGCATACCCCCCCCCCTAA
GTAAACCGCTTTTAGATATTACTTTTGGgtctttttgaaaatccttttaa
aGTTTCCATTTTGAACCACTTGAATGGACTTGTGTACTTTCTTGGGGTCG
GGTAAAGTGAATTTTCATGTCTCATCTTGTCTTTATTCATCCTGAGATta
tgttctcaaattttttttttttttttttgaatgtgaAGTCGGAATTTCTT
GTCACGtgacaaataaattttcaacatccAATGAATTTATACTTGTTATA
CATGTTCTCAAAATTGCGTGTTTTTGCTTATAAATAACAATGACATATGC
ACaaacaaatttcttttccatAGGTAGCCGTTGGTGTTGTTAACGAATAC
ATGAAAGCAGTcaagaaaaaacataaaaggTATAATTAATTTTCTATATT
ATAAGCAATGTTACGTAATAAACAGTACTGGATATCAATCACTACAAATA
GACCTTGtcggagtttttaatttttctaaaaaagcgatgtattgtgggat
tgtttcgaggaGGAATCGTTGATAAAGCGTACCAAGGGTCTTGATTAGCC
TGTACCACCTCAGTGCAAGCGAAACAGCTGATTTCTTACCTCGCAACCTT
TAGGGAAAAAAGGGGCAGAGAAGGTTTTGAAacgaggcccggaattcccg
agttattttttccgagttaaaaaaaccgacttaaaaaaaaccgagttacc
ccgagttatgacgtcatttttggaatttagtgacgtcatttttcatttca
taactcggtttattttgcttcccttaactttccgagttattttccattct
taactcgggaatttttgcttcctttaactttccgagttattttccatttt
ttaactcgggaatttttgcttccttcaactttccgagttatttttgaatt
tttaactcgggaatttttgcttcctttagctttccgagttatttttcttc
ataaaaaaacaccagttttaatctattgatcccataccaacctaaatcaa
agacataaccatccattaccaactagaaaaaccttaacctgcttaataaa
atgaataatcaacaaacacgtgaataattgaaaagcaagaactgaagtta
aaacctgctagataaacaaagtgtaagcccttcaaaaatattacagcata
gataaaatctcaaaaaatacaacagttaagtgatgagataaagctatttc
aaaatttatatttcctCCCTATTTCATTAGAATACTGTAAGTGACATGAC
AAGATTCTCAGAAAAATTCACCGAgtccttcccccttcgctgtaaaaatt
ttgaatgaatcacCAACGATTTTTGAATCAATCATTTCACAGACAATTCG
TAGATTTTTATGAgagatgttaaaaaataaataaataaaactgtCCAGAG
TGCACACACTCACCAAATCAACTtacagaaaaacattcgaaagtttcTCG
CGCGCGTGTGACCtttgcaaaacattcgaattatgaatcgaatctttttg
tgtcataaggctctaattagactTGCGGTAAAAAACATTCCGGGGGTCAA
ATAcgctaatttttcaaaatggaaagTCTTTAAATGTTGACCTGTAGGTA
TATTGTTATTCGAATGTTAACCCccgtctttttataaaaataattcgaac
ATCAAACCCCATTCTGCGCAATGTGAAGTGAAAGAtactggaaaatttta
cttaagcaACGAGGAAACTGCTACTCGAGTTTTTTGTCACTCGTTGTCAC
ACGTACAAAGAATAAACGTAACGTAAGCGAATGAATGAACACCAAATTTT
CGTAAGGTCTTaggtaaaattttacgtgcatgtgagaaaatttttagaaG
CAGAAAAGTCGCCCTTGGCTTGGCACATCCCtgtgttattgaaaaacaat
ggaGGGATCGTGTAAGACCCGTTCGGCTTTATAGAAGCCCCGgggatact
agggttgcgagctgacgggtatgtgccgcaaaaatcgagaaaaaaatgat
ttttcgggattttgtgacccttattggaacttttggctgtttttacaagc
caaaaaaaaaatggaaaataactcggaaagctaaaggaagcaaaaattcc
cgagttaaaaattcaaaaataactcggaaagctaaaggaagagAAAATTC
CCGAGTTAAAAAATGAAAAATAACTCGGAAAGTTAAAGGAAGCAAAACTT
cccgagttaaaaaatggaaaataactcggaatgttaaaggaagcaaaaat
tcccgagttaaaaaatggaaaataactcggaaagttaaaggaagcaaaaa
acccgagttaaaaaatggaaaataactcagaaaattaaaggaagcaaaat
aaaccgagttatgaaatgaaaatcgacgtcactaaattccaaaaatgacg
tcataactcgggataactcgggtcttttttaactcggtttttttaactcg
gaaaaaataactcgggaattcggGGCCTCGTTTGAAACAGGCTAGGCTCG
AGGTAAGAGTATGTACTCGGTCGAATCGTAAAATATTgtttttcgtttgt
ttttttaCAGTAAATACAAGTTGAAGAAGATAGTGAATGTGGAAGAAAAC
CATGACGTATTACGTGGTGATCGTTATCTTATCGAAATAGTAAGTGTTCA
ACAGTAAGTGTTCAAGGATTGTTGTTTAGTCTAGCATGCCAGACGATTGG
ATTTGGAAGAGAGGGTAGTATGGTCAAAGGCCCCGGTGAGACGTTTGAAG
TGGGGtggtcaaaacttttgaaacatttttcagtttttgcgcCTTGTAAA
CACCTTAAAACGCTTTTTAGTTGGATAAAGCAGGATTTGGACTTTTTAGA
CTGCAAAATATTCGGTTGGTCATGCCCCTAGTATTTCATCGCTTCAGATT
TCTTTTAGAAATATAAATATATCTAGCCTTTCCCACTCTTAATGCTCTTA
CCACGGTCGATTTTTGCAGGCTTTTTTCCTGCGAAGAAGAATTtggtaaa
tttttcttttttttcaggaattatCAGTGGAAAATGAAGGTAagtgcatt
ttttattttcctttgaTTGTATTAATACACTCAAATCAACATTAGCGTCA
CTACAGCGTGTCCCAAAAAAGCGGACGAATTTATATAAAGTAAATTTCTC
ATTATTTATTTCAACTACGCGGTTTAGAtataggattttattttatataa
agATTTGTCCGCTTATTTCAGGACACACTGTATAAGGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031264XLOC_031264Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049240-exon-scaffold_154-1491911889:773156..773350TCONS_00049240-exon-scaffold_154-1491911889:773156..773350Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1510915933:773156..773350TCONS_00049240-exon-scaffold_154-1510915933:773156..773350Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1575043694:773156..773350TCONS_00049240-exon-scaffold_154-1575043694:773156..773350Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1491911889:777369..777466TCONS_00049240-exon-scaffold_154-1491911889:777369..777466Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1510915933:777369..777466TCONS_00049240-exon-scaffold_154-1510915933:777369..777466Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1575043694:777369..777466TCONS_00049240-exon-scaffold_154-1575043694:777369..777466Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1491911889:778051..778221TCONS_00049240-exon-scaffold_154-1491911889:778051..778221Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1510915933:778051..778221TCONS_00049240-exon-scaffold_154-1510915933:778051..778221Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1575043694:778051..778221TCONS_00049240-exon-scaffold_154-1575043694:778051..778221Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1491911889:778684..778867TCONS_00049240-exon-scaffold_154-1491911889:778684..778867Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1510915933:778684..778867TCONS_00049240-exon-scaffold_154-1510915933:778684..778867Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1575043694:778684..778867TCONS_00049240-exon-scaffold_154-1575043694:778684..778867Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1491911889:779226..779855TCONS_00049240-exon-scaffold_154-1491911889:779226..779855Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1510915933:779226..779855TCONS_00049240-exon-scaffold_154-1510915933:779226..779855Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1575043694:779226..779855TCONS_00049240-exon-scaffold_154-1575043694:779226..779855Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1491911889:779920..780848TCONS_00049240-exon-scaffold_154-1491911889:779920..780848Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1510915933:779920..780848TCONS_00049240-exon-scaffold_154-1510915933:779920..780848Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1575043694:779920..780848TCONS_00049240-exon-scaffold_154-1575043694:779920..780848Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1491911889:781222..781248TCONS_00049240-exon-scaffold_154-1491911889:781222..781248Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1510915933:781222..781248TCONS_00049240-exon-scaffold_154-1510915933:781222..781248Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1575043694:781222..781248TCONS_00049240-exon-scaffold_154-1575043694:781222..781248Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1491911889:782356..782384TCONS_00049240-exon-scaffold_154-1491911889:782356..782384Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1510915933:782356..782384TCONS_00049240-exon-scaffold_154-1510915933:782356..782384Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1575043694:782356..782384TCONS_00049240-exon-scaffold_154-1575043694:782356..782384Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1491911889:784566..784644TCONS_00049240-exon-scaffold_154-1491911889:784566..784644Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1510915933:784566..784644TCONS_00049240-exon-scaffold_154-1510915933:784566..784644Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1575043694:784566..784644TCONS_00049240-exon-scaffold_154-1575043694:784566..784644Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1491911889:785023..785044TCONS_00049240-exon-scaffold_154-1491911889:785023..785044Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1510915933:785023..785044TCONS_00049240-exon-scaffold_154-1510915933:785023..785044Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1575043694:785023..785044TCONS_00049240-exon-scaffold_154-1575043694:785023..785044Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1491911889:785227..785243TCONS_00049240-exon-scaffold_154-1491911889:785227..785243Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1510915933:785227..785243TCONS_00049240-exon-scaffold_154-1510915933:785227..785243Clytia hemisphaericaexon
TCONS_00049240-exon-scaffold_154-1575043694:785227..785243TCONS_00049240-exon-scaffold_154-1575043694:785227..785243Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:773156..785243 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.895532	0.862794	0.342399	0	6.85265	4.13025	5.17069	8.0543	0.451706	1.86289	1.39008	3.58188	0.882206	0.74564	0.382021	2.94186	1.93814	1.10787	1.33638e-07	0.473788	0.402927	4.52123e-06	1.12043	2.76367	1.12186	3.68694	0.00130335	0.00195128	0.00920743	4.35824
Blast
[Close]
BLAST of TCONS_00049240 vs. Swiss-Prot (Human)
Match: B4GN3 (Beta-1,4-N-acetylgalactosaminyltransferase 3 OS=Homo sapiens GN=B4GALNT3 PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 5.865e-45
Identity = 103/281 (36.65%), Postives = 159/281 (56.58%), Query Frame = 3 
Query:  468 GFLNVHFWGSFCGSRIEDLKRNIHFPYYPSEVSSLTKFYIQRYETGYGQRIFGYLHPPESGEFTFAVSCDDNCEVWLSSSDNPNNMKLIASVG-TFKDPANTKIADFQAYPSQISKPILLNKNNKYYVEVLHKQGAY-KDHVLLTWLAPTWDHIRTINASYISSYIDVNEQIHDVNDYRYLIPVTKACQGLEDLDVTNSIYYYNRTHNSFTMYDYREDFFKLKSVDMSDFTNLLPRIHYNPTYVLDFMP-KRYEGVKLMHESSIYPSDYTELTHMTRYTNC 1301
            G  N+H +  +CGS I+ L+RN+HFP YP   ++L K  +    T YG RIFGYLHP   G+  FA++ DDN E WLS  D  + ++L+ASVG T K+   T   +F  + SQISKP+ L+ +++YY EVLHKQ     DHV + W         TI  S +S  +  NE    +++  + IP T A      +D +N++    +        D R+  +++  +  S   ++LP   Y P+Y++D +P +RY+G++ +H S +YP+DYT L+HM  +  C
Sbjct:  120 GRANLHVFEDWCGSSIQQLRRNLHFPLYPHIRTTLRKLAVSPKWTNYGLRIFGYLHPFTDGKIQFAIAADDNAEFWLSLDDQVSGLQLLASVGKTGKE--WTAPGEFGKFRSQISKPVSLSASHRYYFEVLHKQNEEGTDHVEVAWRRNDPGAKFTIIDS-LSLSLFTNETFLQMDEVGH-IPQTAASH----VDSSNALPRDEQPPADMLRPDPRDTLYRVPLIPKSHLRHVLPDCPYKPSYLVDGLPLQRYQGLRFVHLSFVYPNDYTRLSHMETHNKC 392
The following BLAST results are available for this feature:
BLAST of TCONS_00049240 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
B4GN35.865e-4536.65Beta-1,4-N-acetylgalactosaminyltransferase 3 OS=Ho... [more]
back to top