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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049234 ID=TCONS_00049234|Name=TCONS_00049234|organism=Clytia hemisphaerica|type=transcript|length=1383bp
ACCAGTAGCAGTAAGAAGCAGTggaataaagaagaaaatcaaagaaaaaa
cacACGGAGCAACAAACACTAATCAAAAGCAGAATGAAGTTGAACATGAT
ATTAACCATTGCTTTTTCATGCATTGTCTTTGAAAACGTTTTATCGACAG
TAGCAGtTGCAAACCCTGCTTACATCGGTACATTTGAAAACCTCCAATAC
GTCAAAGGAGCTGGAAAGAATGATTGGCATTACGTCACAATTACATACAA
TGCTGCTTCAAAAAGCTACACATGGTCCAATCGAGCAGGTATCTCATGGT
CATTGTATCCTACAAGCAAGTCTGGTGAATTGAGAGTTGGACAAGATTGT
CCCTATTACTCAACGGGACATACAATTGCAAATTTTACTACTGATGGAGT
TTATGGACCATGGAACGAACTGTATTCACGAAAAGTTGGAAATCCATTGT
TATGTGGAGACTTTGAGAATCACAAATACGACCTCAAAGGCAAAAACGAT
TGGCATTACGTTCACATTGATTACGATGAATCCACTCAAAAATACACATG
GTCCAACAGAGCCGGAGTAAAATGGTCCATGTATCAGACTAATGTTTTCA
ACAAGTTGAGAGTTGGAAAAGATTGTCCTTATCTCAAAAACGGATACACA
GAAgctattttaaatgaaaatggCATCTATGGACCTCATAAGGAATTCTA
TGACAAGAAATagattttttctgcaaaattcATCGAACATACACGTTAAA
TCAAAGTCGTTGGGAGCTGGAAAAAAGGTATTCCAATAATATCtgaattt
agatttttcttttacTAACTTAAAACCGagttgataaaaataaatattat
ttcttaaaaattaactATTCTATAAACAATATTGTGTTTCTAAACGCTAG
AATTAATGGATAAgttattgaaagaaaatatcGAATCTTATCATTACTGT
TTCGAACTCTTTTTTCGGCTTTTAGGCTATCAAATTCAACTCTTCATCGG
CTCGCAGTTTATCGGCTGTATTTCGCTACACTGATTATTAAAAAACGTGA
TATagtttattcaaaatttgcatCGATGGAGAGTATTCCCTTTTCCTCAA
TTTTATAACGCGGTTTAGAATGTAAAANGTGCATCGATTGAGAGTATTCC
CTTATCCTCAATTTTAAAACACGGTTTATAATTTAAAATAGTTTTCTTTT
AGTAAAGGTTAACTTAACTGCATTTGTTCAAATGACACGATTTACTATTT
CTTATGCTTCCGCAACGGTCTTTGAAACTTTTAATCTTATTCGTAACAGT
GATGTTCTGATTAAGGGTTCCTCATCTTTATACAATCATTGACTTGTGAC
TTCAACACCAACAACAGACAACAGCACAGTTCT Run BLAST on NCBI protein sequence of TCONS_00049234-protein >TCONS_00049234-protein ID=TCONS_00049234-protein|Name=TCONS_00049234-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MKLNMILTIAFSCIVFENVLSTVAVANPAYIGTFENLQYVKGAGKNDWHY
VTITYNAASKSYTWSNRAGISWSLYPTSKSGELRVGQDCPYYSTGHTIAN
FTTDGVYGPWNELYSRKVGNPLLCGDFENHKYDLKGKNDWHYVHIDYDES
TQKYTWSNRAGVKWSMYQTNVFNKLRVGKDCPYLKNGYTEAILNENGIYG
PHKEFYDKK Run BLAST on NCBI transcript from alignment at scaffold_154:755551..757467+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049234 ID=TCONS_00049234|Name=TCONS_00049234|organism=Clytia hemisphaerica|type=transcript|length=1917bp|location=Sequence derived from alignment at scaffold_154:755551..757467+ (Clytia hemisphaerica)
ACCAGTAGCAGTAAGAAGCAGTggaataaagaagaaaatcaaagaaaaaa
cacACGGAGCAACAAACACTAATCAAAAGCAGAATGAAGTTGAACATGAT
ATTAACCATTGCTTTTTCATGCATTGTCTTTGAAAACGTTTTATCGACAG
TAGCAGGTaataattcaattttaattttgcttTATTATTGAATTCTGCAA
CATCAGAATACTTTGATTTCAAACAttgcttcttcatttttaaagcaaaa
atagtcCCTGACAAGGTTTATGGTTGATTCTTGGTTGGTACNTTGTGATT
GAATTCTGCAACATCAGAATACTTTGATTTCAAACAttgcttcttcattt
ttaaagcaaaaatagtcCCTGACAAGGTTTATGGTTGATTCTTGGTTGGT
ACTTCTTAACAACCATTCATTCGCTACTTTTATTCGCTTATTTATATCCa
ttcgtttttattttcacagtTGCAAACCCTGCTTACATCGGTACATTTGA
AAACCTCCAATACGTCAAAGGAGCTGGAAAGAATGATTGGCATTACGTCA
CAATTACATACAATGCTGCTTCAAAAAGCTACACATGGTCCAATCGAGCA
GGTATCTCATGGTCATTGTATCCTACAAGCAAGTCTGGTGAATTGAGAGT
TGGACAAGATTGTCCCTATTACTCAACGGGACATACAATTGCAAATTTTA
CTACTGATGGAGTTTATGGACCATGGAACGAACTGTATTCACGAAAAGGT
AATGATTTTAGATTGAATGGTAAAAACAAAGTTCACCTGAAAAGATTATC
TTTATATTTTCACCAATTCCAACTTAAGGCCTCTAATCATAATTAAAGAA
TGATGAGTTGGTAGTTATTTTTGCTTTCTTAATGATGAAATTGTCATCTT
AAGGGATTTTAAACTTAACTGGTAAAGTCAAAGTTTTACATCGATCATAG
TTTGTTTTTCACTTTATAGTTGGAAATCCATTGTTATGTGGAGACTTTGA
GAATCACAAATACGACCTCAAAGGCAAAAACGATTGGCATTACGTTCACA
TTGATTACGATGAATCCACTCAAAAATACACATGGTCCAACAGAGCCGGA
GTAAAATGGTCCATGTATCAGACTAATGTTTTCAACAAGTTGAGAGTTGG
AAAAGATTGTCCTTATCTCAAAAACGGATACACAGAAgctattttaaatg
aaaatggCATCTATGGACCTCATAAGGAATTCTATGACAAGAAATagatt
ttttctgcaaaattcATCGAACATACACGTTAAATCAAAGTCGTTGGGAG
CTGGAAAAAAGGTATTCCAATAATATCtgaatttagatttttcttttacT
AACTTAAAACCGagttgataaaaataaatattatttcttaaaaattaact
ATTCTATAAACAATATTGTGTTTCTAAACGCTAGAATTAATGGATAAgtt
attgaaagaaaatatcGAATCTTATCATTACTGTTTCGAACTCTTTTTTC
GGCTTTTAGGCTATCAAATTCAACTCTTCATCGGCTCGCAGTTTATCGGC
TGTATTTCGCTACACTGATTATTAAAAAACGTGATATagtttattcaaaa
tttgcatCGATGGAGAGTATTCCCTTTTCCTCAATTTTATAACGCGGTTT
AGAATGTAAAANGTGCATCGATTGAGAGTATTCCCTTATCCTCAATTTTA
AAACACGGTTTATAATTTAAAATAGTTTTCTTTTAGTAAAGGTTAACTTA
ACTGCATTTGTTCAAATGACACGATTTACTATTTCTTATGCTTCCGCAAC
GGTCTTTGAAACTTTTAATCTTATTCGTAACAGTGATGTTCTGATTAAGG
GTTCCTCATCTTTATACAATCATTGACTTGTGACTTCAACACCAACAACA
GACAACAGCACAGTTCT Coding sequence (CDS) from alignment at scaffold_154:755551..757467+ >TCONS_00049234 ID=TCONS_00049234|Name=TCONS_00049234|organism=Clytia hemisphaerica|type=CDS|length=1890bp|location=Sequence derived from alignment at scaffold_154:755551..757467+ (Clytia hemisphaerica)
ATGAAGTTGAACATGATATTAACCATTGCTTTTTCATGCATTGTCTTTGA
AAACGTTTTATCGACAGTAGCAGtTGCAAACCCTGCTTACATCGGTACAT
TTGAAAACCTCCAATACGTCAAAGGAGCTGGAAAGAATGATTGGCATTAC
GTCACAATTACATACAATGCTGCTTCAAAAAGCTACACATGGTCCAATCG
AGCAGGTATCTCATGGTCATTGTATCCTACAAGCAAGTCTGGTGAATTGA
GAGTTGGACAAGATTGTCCCTATTACTCAACGGGACATACAATTGCAAAT
TTTACTACTGATGGAGTTTATGGACCATGGAACGAACTGTATTCACGAAA
AGTTGGAAATCCATTGTTATGTGGAGACTTTGAGAATCACAAATACGACC
TCAAAGGCAAAAACGATTGGCATTACGTTCACATTGATTACGATGAATCC
ACTCAAAAATACACATGGTCCAACAGAGCCGGAGTAAAATGGTCCATGTA
TCAGACTAATGTTTTCAACAAGTTGAGAGTTGGAAAAGATTGTCCTTATC
TCAAAAACGGATACACAGAAgctattttaaatgaaaatggCATCTATGGA
CCTCATAAGGAATTCTATGACAAGAAATagATGAAGTTGAACATGATATT
AACCATTGCTTTTTCATGCATTGTCTTTGAAAACGTTTTATCGACAGTAG
CAGtTGCAAACCCTGCTTACATCGGTACATTTGAAAACCTCCAATACGTC
AAAGGAGCTGGAAAGAATGATTGGCATTACGTCACAATTACATACAATGC
TGCTTCAAAAAGCTACACATGGTCCAATCGAGCAGGTATCTCATGGTCAT
TGTATCCTACAAGCAAGTCTGGTGAATTGAGAGTTGGACAAGATTGTCCC
TATTACTCAACGGGACATACAATTGCAAATTTTACTACTGATGGAGTTTA
TGGACCATGGAACGAACTGTATTCACGAAAAGTTGGAAATCCATTGTTAT
GTGGAGACTTTGAGAATCACAAATACGACCTCAAAGGCAAAAACGATTGG
CATTACGTTCACATTGATTACGATGAATCCACTCAAAAATACACATGGTC
CAACAGAGCCGGAGTAAAATGGTCCATGTATCAGACTAATGTTTTCAACA
AGTTGAGAGTTGGAAAAGATTGTCCTTATCTCAAAAACGGATACACAGAA
gctattttaaatgaaaatggCATCTATGGACCTCATAAGGAATTCTATGA
CAAGAAATagATGAAGTTGAACATGATATTAACCATTGCTTTTTCATGCA
TTGTCTTTGAAAACGTTTTATCGACAGTAGCAGtTGCAAACCCTGCTTAC
ATCGGTACATTTGAAAACCTCCAATACGTCAAAGGAGCTGGAAAGAATGA
TTGGCATTACGTCACAATTACATACAATGCTGCTTCAAAAAGCTACACAT
GGTCCAATCGAGCAGGTATCTCATGGTCATTGTATCCTACAAGCAAGTCT
GGTGAATTGAGAGTTGGACAAGATTGTCCCTATTACTCAACGGGACATAC
AATTGCAAATTTTACTACTGATGGAGTTTATGGACCATGGAACGAACTGT
ATTCACGAAAAGTTGGAAATCCATTGTTATGTGGAGACTTTGAGAATCAC
AAATACGACCTCAAAGGCAAAAACGATTGGCATTACGTTCACATTGATTA
CGATGAATCCACTCAAAAATACACATGGTCCAACAGAGCCGGAGTAAAAT
GGTCCATGTATCAGACTAATGTTTTCAACAAGTTGAGAGTTGGAAAAGAT
TGTCCTTATCTCAAAAACGGATACACAGAAgctattttaaatgaaaatgg
CATCTATGGACCTCATAAGGAATTCTATGACAAGAAATag
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049234-exon-scaffold_154-1491911889:755551..755706 | TCONS_00049234-exon-scaffold_154-1491911889:755551..755706 | Clytia hemisphaerica | exon |
| TCONS_00049234-exon-scaffold_154-1510915933:755551..755706 | TCONS_00049234-exon-scaffold_154-1510915933:755551..755706 | Clytia hemisphaerica | exon |
| TCONS_00049234-exon-scaffold_154-1575043694:755551..755706 | TCONS_00049234-exon-scaffold_154-1575043694:755551..755706 | Clytia hemisphaerica | exon |
| TCONS_00049234-exon-scaffold_154-1491911889:756020..756298 | TCONS_00049234-exon-scaffold_154-1491911889:756020..756298 | Clytia hemisphaerica | exon |
| TCONS_00049234-exon-scaffold_154-1510915933:756020..756298 | TCONS_00049234-exon-scaffold_154-1510915933:756020..756298 | Clytia hemisphaerica | exon |
| TCONS_00049234-exon-scaffold_154-1575043694:756020..756298 | TCONS_00049234-exon-scaffold_154-1575043694:756020..756298 | Clytia hemisphaerica | exon |
| TCONS_00049234-exon-scaffold_154-1491911889:756520..757467 | TCONS_00049234-exon-scaffold_154-1491911889:756520..757467 | Clytia hemisphaerica | exon |
| TCONS_00049234-exon-scaffold_154-1510915933:756520..757467 | TCONS_00049234-exon-scaffold_154-1510915933:756520..757467 | Clytia hemisphaerica | exon |
| TCONS_00049234-exon-scaffold_154-1575043694:756520..757467 | TCONS_00049234-exon-scaffold_154-1575043694:756520..757467 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:755551..757467 + |
Blast
The following BLAST results are available for this feature:
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