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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049220 ID=TCONS_00049220|Name=TCONS_00049220|organism=Clytia hemisphaerica|type=transcript|length=1389bp
ATTCATAGGTTTTACGCTGCAGATAGTGGAACAATCTCAACACCAAGATG
GCCTCTTGTAATTGAGCAAAAACAATTGAATTGTATTTGGATAATCAAAA
CAACACCTGATAAAGTCATTCATATCAATTTCATGCATTATGACTTAGAT
TCCAAAGGAACACGTATCCAGATAACTGGTAGAAGATCAAAAGTGAAATC
ATTGTTTTCAAAGACATTACGTGAAGGTGATATCCATTTCCAAAGTGTTC
GTAGTGAATATTCGTTCAACACTGAAAACTACGAAGTTCAAATTGAATTC
ACTTTTACCAAATATTACGACGATCGTGGATTTATATTGGGATGGACAAC
ATCTCCGTTATCCAAGGAGCAGCAAGCGCAAGTGGAAGCGGAAGAATCTT
CAagcaataaaaacattcgaattacacTGCCCATCGTTGCATCAATATTA
CTCATTGCAGTCATATGTATCATCATAAAATACCGCCAACGCAAAAGGAA
TTCTGCCATCATTGTAGCAAGAAACACTCGAAATGGAGTGACCAATACTC
AGTATGCCAATGATGGTACAGATGATTCTGGAAGAACAGTGATTGGGAGG
CCGATGAATAATGAGGACCAAAGAATCGACTCAGGATTAGAAATGACAGC
AGTGACAAATGACCCTTTCGattGCCCACCAAGTTATACTAGCGCTTTAG
CACCTCCAGAACCTCCACCTTCATATGAAACTGTCCTTGCTGAATCAGCA
ATTCCCAAGCCAAATTGAACGGGACATGATTCAATTTATCAAGAAAgaag
actacacgtttttttataagaacaaactatataagaacataaggcttcgc
tggccaaaatgttaaaaacaagttaagaacattttaaggctttgtagact
caaaaaacacccgttttcttaggaaaatggataaaaatggccacaaaatg
gtgaaaataagaacatttgaagaacatttttaggcttgaaacccaaaaag
ttaacaacatcccaaggcttcaaaaatgttggatgttcttataaaaaaac
gtgtacacgaTGATATTGTTCtttgaaatataaatttcttttatacatta
cgtttttttataaattagaATCTACTTTTTATCTTatcaaatatatatat
aatgtTTATAAGTTGAATCAGTCAGAGTCTCCTATTTTCATGTCAGAGGG
CTTCAATAaattcacccctgtctcacagccccactggaattctttttcct
cagtggggataaaagttcctattgaaatcccgatggggatagaaattcta
ttgttccaaggttaaaaaatccagtcgggatggttttggagtacaatttt
taaatattgagtttcgaatagggatgaaatcaaagtaat Run BLAST on NCBI protein sequence of TCONS_00049220-protein >TCONS_00049220-protein ID=TCONS_00049220-protein|Name=TCONS_00049220-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
IHRFYAADSGTISTPRWPLVIEQKQLNCIWIIKTTPDKVIHINFMHYDLD
SKGTRIQITGRRSKVKSLFSKTLREGDIHFQSVRSEYSFNTENYEVQIEF
TFTKYYDDRGFILGWTTSPLSKEQQAQVEAEESSSNKNIRITLPIVASIL
LIAVICIIIKYRQRKRNSAIIVARNTRNGVTNTQYANDGTDDSGRTVIGR
PMNNEDQRIDSGLEMTAVTNDPFDCPPSYTSALAPPEPPPSYETVLAESA
IPKPN Run BLAST on NCBI transcript from alignment at scaffold_154:313308..318306+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049220 ID=TCONS_00049220|Name=TCONS_00049220|organism=Clytia hemisphaerica|type=transcript|length=4999bp|location=Sequence derived from alignment at scaffold_154:313308..318306+ (Clytia hemisphaerica)
ATTCATAGGTTTTACGCTGCAGATAGTGGAACAATCTCAACACCAAGATG
GCCTCTTGTAATTGAGCAAAAACAATTGAATTGTATTTGGATAATCAAAA
CAACACCTGATAAAGTCATTCATATCAATTTCATGCATTATGACTTAGAT
TCCAAAGGAACACGTATCCAGATAACTGGTAAGACAAAATAATGTCTGTC
AAAGGAATGAATGTCGATACTTTACTGTTATTGAGTCCttaaagcctcaa
aatgttcttaacttgttcttaacattttggccgtcgaagccttatgttct
tatatagcttgttattataaaaaaaaagtgtaatcaaatttcagaaaaca
ttAAAACTTTTCCCACAACATATGACAACAATCAAATGACCaatgaaaac
aaatcaaaatcctaaaaagcataaaaaacaaaacaaatcaaatttcACTA
GAGACACATTACTAgaacaattaaaaacaaatttagcgAATAGGAACCCA
TACTTTTTTGGGTGCAGTTAGGGAAAATGAGTGTCGGGGATGTAAATCCC
ATAATGGTCCTTCTTTCACACCATTGAAGGTCCCTCAAATCGGTAAGAGA
ACCGTAATCAAGCAATTCAGTCTCTGACAAGAGTTTGAAAATTGCGTAAA
TTGATTCCCTTAAAAAATCAGtcattcttaaaattttgacctAAATTTGA
TAACTctggctgaagtttagtgataATAGGCCAAAATTAGACACATTCTT
TTAAAactcagtctctctaagggttgattTTTTTCGAGCACTTACTCGGA
CCTccctagcctgttagacgaaaaccgcttttttatcgcgttTTAACAGA
TAAAAAacttggtttgtgggaaggtactggctaggACCTCCCGTACTGGC
TTTTTAAAACTCTGACGTAAATAAAGAATGTGGAAATGGATTTAAAAAAT
GTACAATAATTTTTAGGTAGAAGATCAAAAGTGAAATCATTGTTTTCAAA
GACATTACGTGAAGGTGATATCCATTTCCAAAGTGTTCGTAGTGAATATT
CGTTCAACACTGAAAACTACGAAGTTCAAATTGAATTCACTTTTACCAAA
TATTACGACGATCGTGGATTTATATTGGGATGGACAACATCTCCGTTATC
CAAGGAGCAGCAAGCGCAAGTGGAAGCGGAAGGTAAGAAGCgtatttcca
atttttggcctagacgatgttatcgtccattatagtgatagtaaaggcgc
gAAAATATGGCGGTGTGGcattatggcggtatacggaaataaaaatcggc
gggagagtttcgaagaagactggcaaactctaccgactgtaaactcttct
CGGCAAAAagcccgtttgcgaattttcttcggctttgggcttatttctta
gatagtgatttgtcttagactataggcCCAGCATTGGGCCTTgtcacaga
tttctgtaaatcccgaagggctagatggagtgctttgAGCTTttccaaca
acaacaaaatattgcaaaaatattgtttattgttttccaaaacccgcgaa
gcttctgattggttaaGTGCTAAAATTccattgtaatgtcacgtgatcTA
GATAAGATTTCCTTTCAAAGTGCAGCACTCTTTTTAGCAAAAGTACTCTA
TCTACAatcatccactaaatatttgagacaaaggggagttcccggtgtaa
ttttgaacaccacaattggtttttaagcgccttaaactacagttggaaag
tagagttttaactctgagttttagtATGAGACTTATAAGActttgctcga
atgaggcttggaatatagcctagaagccaccaaacccctctaaaatcgaa
atattcaatggaagaaagtagaagtgctaaaatagcaattctcgcccgaa
ctttaaattctgaaaaacgttaaaatacactaaaaccTCAGTTTTGTTGG
CCTCTCATTAGCATATCGCTGTCTGTGGTGATGTATATCCGTTTTCGAAG
AAACAGCGCTTTGTCaattcattttggaagaaacggcgctTTGAAGCTCA
ATCAAATAAAGCTCACtcatacccagctggcacacaacgttgtttcaacg
ttcttctaacgttaaatggacgttatgaacgttagataaacgttgagaca
acgttgtgtgccagctggcaCCAGATCTTTTCATTCAAATACCAGAATTT
AGGCCCGGTGGAACAAGCATAAAAGTGGGGAGAAAATCTCATTTGGCTGA
AgactcaaaatgagataaattcCTGGcgatttgagaaaaaatctcatttg
ctcaaaagtagGGGAGGATGAAGTCTCCCCAGTGTCCCTGCAATTGATAA
GGTTTAAGAAAAGGCACTTTAAGAGGGCGGTGCTCGTTTCAAGTTCTAGG
CAATGATCACGACATAGTAATCGTTAaagtcggggggggggggggtactt
aggcaaatggaaggTACGGTAGGGTTGAATGAACCATAACAAAAGGATTG
TATACTTCTCAATTGGAGCAGCGCCTAGCCCCTTTACAACTTCtgtgata
tttactttttttgtagAGTCTTTAAACAACTGCTactaaaaagtttattt
tttcttagAATCTTCAagcaataaaaacattcgaattacacTGCCCATCG
TTGCATCAATATTACTCATTGCAGTCATATGTATCATCATAAAATACCGC
CAACGCAAAAGGAATTCTGCCATCATTGTAGCAAGAAACACTCGAAATGG
AGTGACCAATACTCAGTATGCCAATGATGGTACAGATGATTCTGGAAGAA
CAGTGATTGGGAGGCCGATGAATAATGAGGACCAAAGAATCGACTCAGGA
TTAGAAATGACAGCAGTGACAAATGACCCTTTCGGTAAGTCTACGATAGG
GCATATGTGCATTTTCATATGTCAACATACGAgaccaatcaaaatataat
agccgcattctttttcaccgttcaacacaaCATACGAAACCAAAATGTTA
GTGTCGCCGAGGGGTTTCCAGTTTGAATCTTATTTCCTTCCCATGTTTCA
CTAAGTTTCCGAGCTCGCTGGTCTTGTATCTTCCAAAAACAAGCTAAAAG
TCGGTTTATTAAAAGTCCAAGCTTAATTGGAAATctacgtaaaatatcga
ctctttCTATCTTGAACAACTCAAGCTTCGTCTTCTAAGTATGGTAGTTC
ATTCCCAAAGGAATATCTTAAGTGATAAAAACCCTTCCATTGAAATTGAT
TGTAGTTTTCATCAAGGGTTATGATTATGTACTAAGTTATCAGTTCAAGG
CGAGGTAGGGATAACGGATAGCCTATATTATAACCTGGTAACAgctggtc
ataattttcttacgggcacggtaaacctctgaaagCACTTGAGaattaac
catctgaggaaaatagtcctcccgcggaaaattctacaacgagaatcttg
ttgtgcgccgaaaagtcaaaaaataaattttccctGATACGgtgccctat
tcataaacacaatcacgcaactttgttgtcattcccaatCCTTTTAGTTG
AACGCATTCCTTACAATtttgagattgcatattcgtctgATTGtgtgttt
tcacacatccctttagacctttagagctttagcgtggtgggcagaaaacg
aTCATAATCTGATCTCAAGCTATTATGACGTAGCTTATATTTTAGAAATA
ATGTATGACCTAATGCTTGAATATTCCTTAATTATAAGTTttctttgaaa
catttttatctGTACATAGTCTGGCTGGCAAAGAGAAGAAGTAACGTGGC
AAAATATAAAGGCGTCgttaagtaaaaaatattaGTATTATCAAACCAAA
TATCCTGCTACTTGGAAAATGAGCTTGGAAAATCAGCCAGTTTTCTTAAT
CGACATTATTAACCGGCTATCCCGGAAAAAACAGCGAAGAACACTCGGAA
TAGTTAGTGAAATCTAAGTTCGGAAAACACCCGaaatttttgccgaaaat
aaggtcctcaaagttgaaatacttgtCTCCGCAAATGTCTTCGTTTTGTT
CTTGATCGAACTATGTTTCAATGCAATTCTTTAATTTTCAGATTCTGGAA
TAGTTtacctaacagaaaatgtataaaatgccatagttttgtaagttaca
tcagtcagaaaaacacACTTTATACACgagaattatgaaaaaaattacta
tggtcagagcccttaaattctTATTTCCAATCATTTGTTTGATTTCTCGT
TAACTTTTCTTacattcttaaatttttcagattGCCCACCAAGTTATACT
AGCGCTTTAGCACCTCCAGAACCTCCACCTTCATATGAAACTGTCCTTGC
TGAATCAGCAATTCCCAAGCCAAATTGAACGGGACATGATTCAATTTATC
AAGAAAgaagactacacgtttttttataagaacaaactatataagaacat
aaggcttcgctggccaaaatgttaaaaacaagttaagaacattttaaggc
tttgtagactcaaaaaacacccgttttcttaggaaaatggataaaaatgg
ccacaaaatggtgaaaataagaacatttgaagaacatttttaggcttgaa
acccaaaaagttaacaacatcccaaggcttcaaaaatgttggatgttctt
ataaaaaaacgtgtacacgaTGATATTGTTCtttgaaatataaatttctt
ttatacattacgtttttttataaattagaATCTACTTTTTATCTTatcaa
atatatatataatgtTTATAAGTTGAATCAGTCAGAGTCTCCTATTTTCA
TGTCAGAGGGCTTCAATAaattcacccctgtctcacagccccactggaat
tctttttcctcagtggggataaaagttcctattgaaatcccgatggggat
agaaattctattgttccaaggttaaaaaatccagtcgggatggttttgga
gtacaatttttaaatattgagtttcgaatagggatgaaatcaaagtaat Coding sequence (CDS) from alignment at scaffold_154:313308..318306+ >TCONS_00049220 ID=TCONS_00049220|Name=TCONS_00049220|organism=Clytia hemisphaerica|type=CDS|length=3072bp|location=Sequence derived from alignment at scaffold_154:313308..318306+ (Clytia hemisphaerica)
ATTCATAGGTTTTACGCTGCAGATAGTGGAACAATCTCAACACCAAGATG
GCCTCTTGTAATTGAGCAAAAACAATTGAATTGTATTTGGATAATCAAAA
CAACACCTGATAAAGTCATTCATATCAATTTCATGCATTATGACTTAGAT
TCCAAAGGAACACGTATCCAGATAACTGGTAGAAGATCAAAAGTGAAATC
ATTGTTTTCAAAGACATTACGTGAAGGTGATATCCATTTCCAAAGTGTTC
GTAGTGAATATTCGTTCAACACTGAAAACTACGAAGTTCAAATTGAATTC
ACTTTTACCAAATATTACGACGATCGTGGATTTATATTGGGATGGACAAC
ATCTCCGTTATCCAAGGAGCAGCAAGCGCAAGTGGAAGCGGAAGAATCTT
CAagcaataaaaacattcgaattacacTGCCCATCGTTGCATCAATATTA
CTCATTGCAGTCATATGTATCATCATAAAATACCGCCAACGCAAAAGGAA
TTCTGCCATCATTGTAGCAAGAAACACTCGAAATGGAGTGACCAATACTC
AGTATGCCAATGATGGTACAGATGATTCTGGAAGAACAGTGATTGGGAGG
CCGATGAATAATGAGGACCAAAGAATCGACTCAGGATTAGAAATGACAGC
AGTGACAAATGACCCTTTCGattGCCCACCAAGTTATACTAGCGCTTTAG
CACCTCCAGAACCTCCACCTTCATATGAAACTGTCCTTGCTGAATCAGCA
ATTCCCAAGCCAAATTGAATTCATAGGTTTTACGCTGCAGATAGTGGAAC
AATCTCAACACCAAGATGGCCTCTTGTAATTGAGCAAAAACAATTGAATT
GTATTTGGATAATCAAAACAACACCTGATAAAGTCATTCATATCAATTTC
ATGCATTATGACTTAGATTCCAAAGGAACACGTATCCAGATAACTGGTAG
AAGATCAAAAGTGAAATCATTGTTTTCAAAGACATTACGTGAAGGTGATA
TCCATTTCCAAAGTGTTCGTAGTGAATATTCGTTCAACACTGAAAACTAC
GAAGTTCAAATTGAATTCACTTTTACCAAATATTACGACGATCGTGGATT
TATATTGGGATGGACAACATCTCCGTTATCCAAGGAGCAGCAAGCGCAAG
TGGAAGCGGAAGAATCTTCAagcaataaaaacattcgaattacacTGCCC
ATCGTTGCATCAATATTACTCATTGCAGTCATATGTATCATCATAAAATA
CCGCCAACGCAAAAGGAATTCTGCCATCATTGTAGCAAGAAACACTCGAA
ATGGAGTGACCAATACTCAGTATGCCAATGATGGTACAGATGATTCTGGA
AGAACAGTGATTGGGAGGCCGATGAATAATGAGGACCAAAGAATCGACTC
AGGATTAGAAATGACAGCAGTGACAAATGACCCTTTCGattGCCCACCAA
GTTATACTAGCGCTTTAGCACCTCCAGAACCTCCACCTTCATATGAAACT
GTCCTTGCTGAATCAGCAATTCCCAAGCCAAATTGAATTCATAGGTTTTA
CGCTGCAGATAGTGGAACAATCTCAACACCAAGATGGCCTCTTGTAATTG
AGCAAAAACAATTGAATTGTATTTGGATAATCAAAACAACACCTGATAAA
GTCATTCATATCAATTTCATGCATTATGACTTAGATTCCAAAGGAACACG
TATCCAGATAACTGGTAGAAGATCAAAAGTGAAATCATTGTTTTCAAAGA
CATTACGTGAAGGTGATATCCATTTCCAAAGTGTTCGTAGTGAATATTCG
TTCAACACTGAAAACTACGAAGTTCAAATTGAATTCACTTTTACCAAATA
TTACGACGATCGTGGATTTATATTGGGATGGACAACATCTCCGTTATCCA
AGGAGCAGCAAGCGCAAGTGGAAGCGGAAGAATCTTCAagcaataaaaac
attcgaattacacTGCCCATCGTTGCATCAATATTACTCATTGCAGTCAT
ATGTATCATCATAAAATACCGCCAACGCAAAAGGAATTCTGCCATCATTG
TAGCAAGAAACACTCGAAATGGAGTGACCAATACTCAGTATGCCAATGAT
GGTACAGATGATTCTGGAAGAACAGTGATTGGGAGGCCGATGAATAATGA
GGACCAAAGAATCGACTCAGGATTAGAAATGACAGCAGTGACAAATGACC
CTTTCGattGCCCACCAAGTTATACTAGCGCTTTAGCACCTCCAGAACCT
CCACCTTCATATGAAACTGTCCTTGCTGAATCAGCAATTCCCAAGCCAAA
TTGAATTCATAGGTTTTACGCTGCAGATAGTGGAACAATCTCAACACCAA
GATGGCCTCTTGTAATTGAGCAAAAACAATTGAATTGTATTTGGATAATC
AAAACAACACCTGATAAAGTCATTCATATCAATTTCATGCATTATGACTT
AGATTCCAAAGGAACACGTATCCAGATAACTGGTAGAAGATCAAAAGTGA
AATCATTGTTTTCAAAGACATTACGTGAAGGTGATATCCATTTCCAAAGT
GTTCGTAGTGAATATTCGTTCAACACTGAAAACTACGAAGTTCAAATTGA
ATTCACTTTTACCAAATATTACGACGATCGTGGATTTATATTGGGATGGA
CAACATCTCCGTTATCCAAGGAGCAGCAAGCGCAAGTGGAAGCGGAAGAA
TCTTCAagcaataaaaacattcgaattacacTGCCCATCGTTGCATCAAT
ATTACTCATTGCAGTCATATGTATCATCATAAAATACCGCCAACGCAAAA
GGAATTCTGCCATCATTGTAGCAAGAAACACTCGAAATGGAGTGACCAAT
ACTCAGTATGCCAATGATGGTACAGATGATTCTGGAAGAACAGTGATTGG
GAGGCCGATGAATAATGAGGACCAAAGAATCGACTCAGGATTAGAAATGA
CAGCAGTGACAAATGACCCTTTCGattGCCCACCAAGTTATACTAGCGCT
TTAGCACCTCCAGAACCTCCACCTTCATATGAAACTGTCCTTGCTGAATC
AGCAATTCCCAAGCCAAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049220-exon-scaffold_154-1491911889:313308..313485 | TCONS_00049220-exon-scaffold_154-1491911889:313308..313485 | Clytia hemisphaerica | exon |
| TCONS_00049220-exon-scaffold_154-1510915933:313308..313485 | TCONS_00049220-exon-scaffold_154-1510915933:313308..313485 | Clytia hemisphaerica | exon |
| TCONS_00049220-exon-scaffold_154-1575043694:313308..313485 | TCONS_00049220-exon-scaffold_154-1575043694:313308..313485 | Clytia hemisphaerica | exon |
| TCONS_00049220-exon-scaffold_154-1491911889:314274..314489 | TCONS_00049220-exon-scaffold_154-1491911889:314274..314489 | Clytia hemisphaerica | exon |
| TCONS_00049220-exon-scaffold_154-1510915933:314274..314489 | TCONS_00049220-exon-scaffold_154-1510915933:314274..314489 | Clytia hemisphaerica | exon |
| TCONS_00049220-exon-scaffold_154-1575043694:314274..314489 | TCONS_00049220-exon-scaffold_154-1575043694:314274..314489 | Clytia hemisphaerica | exon |
| TCONS_00049220-exon-scaffold_154-1491911889:315916..316191 | TCONS_00049220-exon-scaffold_154-1491911889:315916..316191 | Clytia hemisphaerica | exon |
| TCONS_00049220-exon-scaffold_154-1510915933:315916..316191 | TCONS_00049220-exon-scaffold_154-1510915933:315916..316191 | Clytia hemisphaerica | exon |
| TCONS_00049220-exon-scaffold_154-1575043694:315916..316191 | TCONS_00049220-exon-scaffold_154-1575043694:315916..316191 | Clytia hemisphaerica | exon |
| TCONS_00049220-exon-scaffold_154-1491911889:317588..318306 | TCONS_00049220-exon-scaffold_154-1491911889:317588..318306 | Clytia hemisphaerica | exon |
| TCONS_00049220-exon-scaffold_154-1510915933:317588..318306 | TCONS_00049220-exon-scaffold_154-1510915933:317588..318306 | Clytia hemisphaerica | exon |
| TCONS_00049220-exon-scaffold_154-1575043694:317588..318306 | TCONS_00049220-exon-scaffold_154-1575043694:317588..318306 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_154 | supercontig | scaffold_154:313308..318306 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000859 | CUB_dom |
Blast
The following BLAST results are available for this feature:
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