TCONS_00049216 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049216
Unique NameTCONS_00049216
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length186

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049216 ID=TCONS_00049216|Name=TCONS_00049216|organism=Clytia hemisphaerica|type=transcript|length=186bp
TACCTGATTCTGCAGAATCACCACTTCCTTGAATCTCACTTCGTTtcgat
gatgaagatgaagcagcagttatctttttcttttgttgttgcgCTTTAAT
GAAAGCTGAGGTGACTTGAGCGATAGCatctttcttgattttctctAAAG
CTGCCAGTACTTCTGGTTGTTTCATCACATCACCAC
Run BLAST on NCBI

transcript from alignment at scaffold_154:260314..260567+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049216 ID=TCONS_00049216|Name=TCONS_00049216|organism=Clytia hemisphaerica|type=transcript|length=254bp|location=Sequence derived from alignment at scaffold_154:260314..260567+ (Clytia hemisphaerica)
TACCTGATTCTGCAGAATCACCACTTCCTTGAATCTCACTTCGTTtcgat
gatgaagatgaagcagcagttatctttttcttttgttgttgcgCTTTAAT
GAAAGCTGAGGTGANGATGATGAAGATGAAGCAGCagttatctttttctt
ttgtttttgtgctTTGATGAAAGCTGAGGTGACTTGAGCGATAGCatctt
tcttgattttctctAAAGCTGCCAGTACTTCTGGTTGTTTCATCACATCA
CCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031250XLOC_031250Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049216-exon-scaffold_154-1491911889:260314..260423TCONS_00049216-exon-scaffold_154-1491911889:260314..260423Clytia hemisphaericaexon
TCONS_00049216-exon-scaffold_154-1510915933:260314..260423TCONS_00049216-exon-scaffold_154-1510915933:260314..260423Clytia hemisphaericaexon
TCONS_00049216-exon-scaffold_154-1575043694:260314..260423TCONS_00049216-exon-scaffold_154-1575043694:260314..260423Clytia hemisphaericaexon
TCONS_00049216-exon-scaffold_154-1491911889:260492..260567TCONS_00049216-exon-scaffold_154-1491911889:260492..260567Clytia hemisphaericaexon
TCONS_00049216-exon-scaffold_154-1510915933:260492..260567TCONS_00049216-exon-scaffold_154-1510915933:260492..260567Clytia hemisphaericaexon
TCONS_00049216-exon-scaffold_154-1575043694:260492..260567TCONS_00049216-exon-scaffold_154-1575043694:260492..260567Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:260314..260567 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049216 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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