TCONS_00049211 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049211
Unique NameTCONS_00049211
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length383

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049211 ID=TCONS_00049211|Name=TCONS_00049211|organism=Clytia hemisphaerica|type=transcript|length=383bp
GCGGAGGATTATTTGTAACATTATCTCTAATATTGAGCAATATTTCTATG
GGCAATAGTAGTTTAAAAGTATCACCATAGTTTCTACAcccctacattta
gggggggtcttgggttagcacttaaggggggcgtcctcttacctaagggg
gggggtcttgacccctctagaaactatgatCACTTTCGCGTTTGGCTGAT
ATTCCGATGCCCCATCTTTTAGAGcggtgaaattttcatcttcTATGATG
TCAAGAGCTATGGAGAAAAGAAGCAAAGCAACTATTCTATACGCAACGGA
AACAGGGAAATCCGAGAAATTTGCTAACACGCTGAATGAAATCCTCTTGT
TTGCTTTTGATAGCAAAGTGGTTTGTATGGAAG
Run BLAST on NCBI

transcript from alignment at scaffold_154:88780..89162+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049211 ID=TCONS_00049211|Name=TCONS_00049211|organism=Clytia hemisphaerica|type=transcript|length=383bp|location=Sequence derived from alignment at scaffold_154:88780..89162+ (Clytia hemisphaerica)
GCGGAGGATTATTTGTAACATTATCTCTAATATTGAGCAATATTTCTATG
GGCAATAGTAGTTTAAAAGTATCACCATAGTTTCTACAcccctacattta
gggggggtcttgggttagcacttaaggggggcgtcctcttacctaagggg
gggggtcttgacccctctagaaactatgatCACTTTCGCGTTTGGCTGAT
ATTCCGATGCCCCATCTTTTAGAGcggtgaaattttcatcttcTATGATG
TCAAGAGCTATGGAGAAAAGAAGCAAAGCAACTATTCTATACGCAACGGA
AACAGGGAAATCCGAGAAATTTGCTAACACGCTGAATGAAATCCTCTTGT
TTGCTTTTGATAGCAAAGTGGTTTGTATGGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031247XLOC_031247Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049211-exon-scaffold_154-1491911889:88780..89162TCONS_00049211-exon-scaffold_154-1491911889:88780..89162Clytia hemisphaericaexon
TCONS_00049211-exon-scaffold_154-1510915933:88780..89162TCONS_00049211-exon-scaffold_154-1510915933:88780..89162Clytia hemisphaericaexon
TCONS_00049211-exon-scaffold_154-1575043694:88780..89162TCONS_00049211-exon-scaffold_154-1575043694:88780..89162Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:88780..89162 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.402712	0.837632	0	0	0.518568	1.83356	0.250842	1.43487	0	0.645903	0.906637	0.699922	0.347335	0.416465	2.67813	1.11444	0.528324	2.07381	0.921824	2.12546	0.414488	0.403244	1.87115	1.83735	2.23664	2.58199	1.6408	2.62904
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049211 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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