TCONS_00049203 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049203
Unique NameTCONS_00049203
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length356

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049203 ID=TCONS_00049203|Name=TCONS_00049203|organism=Clytia hemisphaerica|type=transcript|length=356bp
CCAAGGTCTTTCACAACATCTTTGTTTTCAATCTCAACACCAGACGGTGA
TGTATAGCTTGTTTGAGTCTTGATCTCACGGTTCTTTCCATAGCGCAAGa
gttcaaattttatatcattCAGCTTCATATTGTTGTCATCCGCCCATTTA
TATATTCTATCAAGATCTTTTTGAAGTAGGACAGCATCTTCTAGAGTTTT
GACTTCCTTTGTGGCGCGAGTGTCATCAGCAAAGGATTTGAGAAAGCTGT
GCACCACTTCCTTGTCAATATCCCCAATCAATATGAGGAAAATCAAAGGT
CCCAAAACACTACCTTGAGGGACTCCTGAAATGACCTGTTGTGATTCAGA
AGTGAC
Run BLAST on NCBI

protein sequence of TCONS_00049203-protein

>TCONS_00049203-protein ID=TCONS_00049203-protein|Name=TCONS_00049203-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
VTSESQQVISGVPQGSVLGPLIFLILIGDIDKEVVHSFLKSFADDTRATK
EVKTLEDAVLLQKDLDRIYKWADDNNMKLNDIKFELLRYGKNREIKTQTS
YTSPSGVEIENKDVVKDL
Run BLAST on NCBI

transcript from alignment at scaffold_153:176528..176883

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049203 ID=TCONS_00049203|Name=TCONS_00049203|organism=Clytia hemisphaerica|type=transcript|length=356bp|location=Sequence derived from alignment at scaffold_153:176528..176883 (Clytia hemisphaerica)
GTCACTTCTGAATCACAACAGGTCATTTCAGGAGTCCCTCAAGGTAGTGT
TTTGGGACCTTTGATTTTCCTCATATTGATTGGGGATATTGACAAGGAAG
TGGTGCACAGCTTTCTCAAATCCTTTGCTGATGACACTCGCGCCACAAAG
GAAGTCAAAACTCTAGAAGATGCTGTCCTACTTCAAAAAGATCTTGATAG
AATATATAAATGGGCGGATGACAACAATATGAAGCTGaatgatataaaat
ttgaactCTTGCGCTATGGAAAGAACCGTGAGATCAAGACTCAAACAAGC
TATACATCACCGTCTGGTGTTGAGATTGAAAACAAAGATGTTGTGAAAGA
CCTTGG

Coding sequence (CDS) from alignment at scaffold_153:176528..176883

>TCONS_00049203 ID=TCONS_00049203|Name=TCONS_00049203|organism=Clytia hemisphaerica|type=CDS|length=354bp|location=Sequence derived from alignment at scaffold_153:176528..176883 (Clytia hemisphaerica)
GTCACTTCTGAATCACAACAGGTCATTTCAGGAGTCCCTCAAGGTAGTGT
TTTGGGACCTTTGATTTTCCTCATATTGATTGGGGATATTGACAAGGAAG
TGGTGCACAGCTTTCTCAAATCCTTTGCTGATGACACTCGCGCCACAAAG
GAAGTCAAAACTCTAGAAGATGCTGTCCTACTTCAAAAAGATCTTGATAG
AATATATAAATGGGCGGATGACAACAATATGAAGCTGaatgatataaaat
ttgaactCTTGCGCTATGGAAAGAACCGTGAGATCAAGACTCAAACAAGC
TATACATCACCGTCTGGTGTTGAGATTGAAAACAAAGATGTTGTGAAAGA
CCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031246XLOC_031246Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049203-exon-scaffold_153-1491911889:176528..176883TCONS_00049203-exon-scaffold_153-1491911889:176528..176883Clytia hemisphaericaexon
TCONS_00049203-exon-scaffold_153-1510915933:176528..176883TCONS_00049203-exon-scaffold_153-1510915933:176528..176883Clytia hemisphaericaexon
TCONS_00049203-exon-scaffold_153-1575043694:176528..176883TCONS_00049203-exon-scaffold_153-1575043694:176528..176883Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049203-proteinTCONS_00049203-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_153supercontigscaffold_153:176528..176883 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.8966	0.262561	4.11234	1.83696	2.57815	1.09524	1.42496	3.90906	4.06918	2.83046	2.64475	2.16123	2.00167	4.12338	2.49594	2.74933	1.12254	3.80128	3.12834	1.38056	4.29423	3.84604	1.79615	1.61205	1.92285	0.900873	1.73692	1.08452	2.07224	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049203 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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