TCONS_00049194 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049194
Unique NameTCONS_00049194
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2542

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049194 ID=TCONS_00049194|Name=TCONS_00049194|organism=Clytia hemisphaerica|type=transcript|length=2542bp
atgatggaatggaaaatcaccattcttataaaaaaagcgtgtagtaggTA
GATGTAAATGATTATAAATGGTCTTTTTTTATCTCTTCTTTTTTCCTAAT
TCAATGTCAATATGTTGACTTCctattatatacattttgtTGTGATTATC
TGactaaagaaacaaaaattagtacaaattgcctaaagtttaaaaaaata
aaaatgttgagTAAAATTAAATAAGATATCTAATGCTACGTATAAAAGAT
TATTGAGCTCTCCCAGAAAATACTACAGTATActgtatataaaaataaat
tgcTTTAGTGGTGAAGCTAGTGGTGGATATTACTATTTGCTTACAGCTAC
TGTTAACTCCCTGACATACATTGCCTGAAAAGGTAACTAATACAAACACC
GAGACACTTATATCCAATCGTCTTGTTTGTTCTCAATTTGTACATAAAAC
GATCTGAGGGacaaaaacatcaacaaaatgcAAACCAAATCAGCAATTAT
TTTTGCTGATACAACATACGTAAAATCACCCACTGAAAGTATTTGAATTC
ATGATAGTAAAAACAACCGTAAAATCTAACAGCCAGATTTTCCATTCATC
ATATTAACAGATGCAGTTTGAGGTAGTTGAGTTCCTTTTAATAACAAGTC
TCTTACTCCATTGCACCCAGAACAACAAGGGAAGAAAGGTTGCATCAAGA
CGTACAAAATGGCACATACAAATCCCAAAGGCCAGCAAACACAGATCAAA
AGAATAAACCATATGATGGTCCACAATGTTTTCTCGCAGTCACCCATGAT
ATTTGCTTTTAAATTTACTTAGGAAAATAGTATTCTATGATTTTATGTTA
AAAATTGCATTCGCTAACAACAGCAATGACAACCTTTGACTTTCCTTTCG
TTTTCTTTCGTTTTCTggactttgtttttgttttggtaGCCGCCCAGAAT
GAGTAATTTGCAGAACGAGTATTCgaattttgattgattgattgatttta
cgcAACTTCAATGTTTGGGTTGTGGTCAGTCTTacatgaatttaaaaaaa
cttcccGATCAAAATAAGAGCTTACGATGATAAAACCGTGTGATCACGGT
GGGCAGCTAGGACTTATACCAATTTTCATCATGCCGTATCAAAGTCTAca
aaaaattatctaaaaaacaaaaaagaaaactcaatcaatcaaacttcaaa
atggctaaaaaagCATACGATTACTTGTTCAAACTTCTGCTTATTGGAGA
TAGTGGAGTTGGAAAAACTTGTTTACTGTTCAGATTTTCAGATGATGCCT
TCAATACAACATTTATTTCTACAATAGgaattgactttaaaatcaaaact
atTGAAATTGATGGGAAAAAGATAAAGTTACAAATATGGGATACAGCAGG
ACAAGAAAGATTTCACACAATCACTACGTCTTATTACAGAGGTGCCATGG
GCATCATGTTGGTTTATGACATAACACAAGAAAAGACATTTGATAATATT
GCTAAATGGCTACGAAACATCGACGAGCACGCAAGTGAAGGTGTTGAAAG
AATGATTCTCGGCAACAAATGTGATATGGAAGATAAACGAATGGTCAACA
AAGAGAGGGGAGAAGGAATTGCCCGCGAACACGGAATCAAATTTTTCGAA
ACCAGtgcaaaagaaaatataaacgTTGAAGAAGCTTTCATGACTTTGAC
ACAAGATATTTTACGAAAACATTTGGCTGGAGCCTCTACGGACGATACAA
CCAAAGGTGTTATTGTTGGTGATAAAAATAGTAGTCAGTCAAAAATGGGC
GGTGGTTGTTGTTAATAATACGTTATTATTATCACGATTTGTGTGATTTC
GATTTGGATTCGCTTTCAAAATCGATTGATCGTTAATGAAGCAGTCGGAG
AAAGTTTTTGTTGAAATCCCAAAAAATGTCGATGAAAATGCTATGGATAC
CGGATCGGAGGAAATAATAGacaaaatggtcacaaaatgcaCTTTACAGA
TGGAATCGGCTTATTAGAAAGCATCATTCATGTCAGAAAATCTAGTGATG
ATTTTATCTAAATTTTTAGAATaagtatttgttttgttttgagtcACAAT
CAAGTTCAATATACACTTTATGCTCATAAGTtaattccctttttatagaa
TCTTTCAGAATCTAGCCAATCCAAGATCACCCAATATTTTGTATGGTTTC
TCTTGTTTTCCtttgcattttattttatttcgagATAAAGCGCGGAAGAA
GAAGTTTTTGGTCCCATGGTCTATTTATTAGTTTAGTATTTAgtataatt
attttttcaaagaaatagatttccttttttttcttataatttttctttgt
tgcaaTATATATTTTGTACGTTAATTATGGTTGACTAGTTAGATTGTAAT
CTTCAATTTATCAATTAGTCATTAAATTTTGCTTTCTACGTCTTTTTTAA
CGGACTtaaaatatgcaaaaatttCAGAATAATAAACCACGCACACTCTA
ATCTTGAATAGTTAACggttttcaatttcaatacaACAGGAC
Run BLAST on NCBI

protein sequence of TCONS_00049194-protein

>TCONS_00049194-protein ID=TCONS_00049194-protein|Name=TCONS_00049194-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MAKKAYDYLFKLLLIGDSGVGKTCLLFRFSDDAFNTTFISTIGIDFKIKT
IEIDGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITQEKTFDNI
AKWLRNIDEHASEGVERMILGNKCDMEDKRMVNKERGEGIAREHGIKFFE
TSAKENINVEEAFMTLTQDILRKHLAGASTDDTTKGVIVGDKNSSQSKMG
GGCC
Run BLAST on NCBI

transcript from alignment at scaffold_153:81113..92050-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049194 ID=TCONS_00049194|Name=TCONS_00049194|organism=Clytia hemisphaerica|type=transcript|length=10938bp|location=Sequence derived from alignment at scaffold_153:81113..92050- (Clytia hemisphaerica)
ATGATGGAATGGAAAATCACCATTCTTATAAAAAAAGCGTGTAGTAGGTA
GATGTAAATGATTATAAATGGTCTTTTTTTATCTCTTCTTTTTTCCTAAT
TCAATGTCAATATGTTGACTTCCTATTATATACATTTTGTTGTGATTATC
TGACTAAAGAAACAAAAATTAGTACAAATTGCCTAAAGTTTAAAAAAATA
AAAATGTTGAGTAAAATTAAATAAGATATCTAATGCTACGTATAAAAGAT
TATTGAGCTCTCCCAGAAAATACTACAGTATACTGTATATAAAAATAAAT
TGCTTTAGTGGTGAAGCTAGTGGTGGATATTACTATTTGCTTACAGCTAC
TGTTAACTCCCTGACATACATTGCCTGAAAAGGTAACTAATACAAACACC
GAGACACTTATATCCAATCGTCTTGTTTGTTCTCAATTTGTACATAAAAC
GATCTGAGGGACAAAAACATCAACAAAATGCAAACCAAATCAGCAATTAT
TTTTGCTGATACAACATACGTAAAATCACCCACTGAAAGTATTTGAATTC
ATGATAGTAAAAACAACCGTAAAATCTAACAGCCAGATTTTCCATTCATC
ATATTAACAGATGCAGTTTGAGGTAGTTGAGTTCCTTTTAATAACAAGTC
TCTTACTCCATTGCACCCAGAACAACAAGGGAAGAAAGGTTGCATCAAGA
CGTACAAAATGGCACATACAAATCCCAAAGGCCAGCAAACACAGATCAAA
AGAATAAACCATATGATGGTCCACAATGTTTTCTCGCAGTCACCCATGAT
ATTTGCTTTTAAATTTACTTAGGAAAATAGTATTCTATGATTTTATGTTA
AAAATTGCATTCGCTAACAACAGCAATGACAACCTTTGACTTTCCTTTCG
TTTTCTTTCGTTTTCTGGACTTTGTTTTTGTTTTGGTAGCCGCCCAGAAT
GAGTAATTTGCAGAACGAGTATTCGAATTTTGATTGATTGATTGATTTTA
CGCAACTTCAATGTTTGGGTTGTGGTCAGTCTTACATGAATTTAAAAAAA
CTTCCCGATCAAAATAAGAGCTTACGATGATAAAACCGTGTGATCACGGT
GGGCAGCTAGGACTTATACCAATTTTCATCATGCCGTATCAAAGTCTACA
AAAAATTATCTAAAAAACAAAAAAGAAAACTCAATCAATCAAACTTCAAA
ATGGCTAAAAAAGCATACGATTACTTGTTCAAACTTCTGCTTATTGGAGA
TAGTGGAGTTGGAAAAACTTGTTTACTGTTCAGATTTTCAGATGATGCCT
TCAATACAACATTTATTTCTACAATAGGTGAGATTATATCAAATTTCTTC
TGGGGAATCCAGGGGTCTTATTGAATTAATCAAGCCAACCTTCTGTCTTT
CAAATACATACATGGCCAGAAAGATTCTCCCACTCTTCTGTTGTATCTAT
TAAAATCTACTTGATGGCACAGGCAGTAGCTTGAGGCCACTCATAAATCC
ATTTTAGGGTAGAGCCATCCACAAACTCAGATTCAACTCACAAAAAAAAT
TGATTGGACGTTTTATTTACTAACCCTCAGTCCCTTTCCATTAATATCGC
TGTGGCAATGAAACTTGATCTCATAATATTCAACCCTCCTTTATATTTAA
AAAATAATGGAGCTAATTCCTAAACTTTTTCAAGAAAATAAAATTCCCAG
AATCAATTATATAGTCCAGGAGGCAGTATGTATTAGGCATGCACATTGCA
ACATTGGTACCGTGAGATCAGGTAACTTGCATAAGGTGGAGGCTAACATG
CATAGCCCTCAAATGAATGACCTGGCTGGTCATTAAAATACAAATTTAAA
TCAAAACAAAAATGGTAGAGTAGAGCAAGCGGCACAAGTATTTCAACCGG
TATTCCCACGAAGCCATATTTTGGTTTGTATAGAAATTTCGCCTGTCAAA
TCTAAACAACAAAATGGTCAAACTCACTAAAGCAAAACATTGCGGCAACG
GCATTTCCCTGGATAAAAATTCTGGTCACGTGACCATCCGTGATTTTAGA
CCAATGAAAACGCTTCATTTCCCTGGATTAAAGTTGTGTCTACACTAACA
CGCGGGAAATGGCTAGTAAAAGAGAGAAAAAACCGGGGGTCAAATTAAAT
TTTTCTTCCTTCTTGCGGCAAACATTAAAGACTTTAAGAGGCCATTTATT
TAAGAAAGGGGTGTTATATCATGAATGAATTATGTAAGTAAGTGATATTT
TAAGTAACAAGCTTATTAACAATTTTATTTTGAAGTTTGTTTTTAAAAAC
AGAACCCCCGTGCTATAAGATGATCTCATCTTATTAACTTATGGACCCAA
TTGGAAGTCTTTGTAATACAGATCATTTGGCAGTGTAGTTGCAGCCTATA
CAAGAATTGGAATCTAAAGTCTGAAGTCGTGTCTCCTTGTCAGTGACCCC
GCAGAGAAGTTTTTAGTTGGCAGACACTGACTTTAGGTTGGTTTGGAAAT
CGTTTTATTTTGAAATGTAATCTTCACTTTAGATGAATACTTTTATTTAT
TTGGATTCATGAAAGGTTCAAGGTTTGTTTACTTTTTATTTCAAATTATT
TATTTGATTTATTGAGCTGCAATAGCTGAAACGAAGATTTTTGATAGTTA
TCATCGTGGGCTTGGCTGCCATTTTGAATTTCGATTTTTTTCTCTCCTGT
ACTCGGCAATTTAGAGGTTGTTCGTAATACGCGATTTGGCTTACGCATAA
CACTTGTGACGCGTGTTCCATAAGGCAAAACAATGGAAATGCGTCAATCC
GTTCAGCTGACCAAAATGACACAAAAATGACAAAATGGCCTGTCAAGACA
TTTTAATATCTTTTTGTTTGGTAAAGCAATCAATCTCAAATAAAAAAAGT
CTTGACAAGGAATCACGTGCGTTTGGTTTGGGAACGCGAAACACGAACGC
AAACTACCCATGCCTAAACTTTTCAATATATCTCCAGAACTAACAGATTT
TTTGAAATTCTGTAAAAAGGTCTAAGTTCCTGAATAGTTTTACTATGTTC
TGTGAAAAAATCATAACCATCAGTCAAATACTCGTTCGTCTACTTAAGAT
AAAAGACAAAAATTTGCGAAGAAAAATAAACCTTGAGCACAAAAGATGCT
TTTTTAAACACTTTTTTCCACCGAAAAACAAATAACTTTTACAGACTTAC
CATCCCCAAACATTGAAGAAGCCTCTACTAATTAAAGTAAATGAGATGAG
ATAAGATAAAACCTTAAAATCAACCATAATTTACAACCTTTCGTCTAAAG
CAAAAGACGTGCTTTTCTCGCCGCCATCTTGTTTTTCGAATGAGAATTCT
AGAGAATTCCATTCATTTCCAGCTCCCGCGGTCTTTTTTCATCCAATCAG
ATCGCGTGATTTCACTTTCGCTTTCTCTAGTCCAATAAGACTGCAGGATT
TGAGTCATGTGACATCTCTATTAAAAACCCGCGCGAAATACAGGGGGTCA
CAAAATAGAAATACAGGGGGTCACACTACTGGCTACAGGAACTGAAAGCA
ATNNTACTGAAAGAGGGATAAGGCTGGGACAATCTATTTAAAAGATATGG
ACAAAAAAAGGCACTTTTTTGGGTGATAATTAAGATTTTACTTAAAAACT
TTAATTCTCTTACCCCCGTCTCGGGCCCCCCTGGTATGAGCAAGGGAACC
ATGTTGGCCAACCCTACTGAAAATTTCAGATCAAAACAAACAAGGAATTA
ATTCCTGTATCTCGAAGAAAATTGGAAAAAGCTGGTTTTTGACTGTTTCT
GATCCTAAAGTGCTATTTTTTATTAAAAGCTATGCAATTTATGTTTGGAT
TTCTAGAAAGCTTACCCATTCATTGCTAGTACATTTTTTATTTGAAAGTA
ATCTCTTCATGGAATAAAAAGATATAGTCAAATCTTGTAGGGTCATTTTT
CAAAAATATTTTGCCAAATTAAATTCGATTTTCGCATTTCTCCATTTTAC
CCTACGCAAACGCACGTGGAATAAATGAGCTTTTCATATAGCCAGCAGAA
TTACCATAGCAATTAGGGGTCTTCGACAAAAAACTTTCAAATAAGCTTCA
GACCCCCTCCCCCCCTTGCTCTTATCTGCCAAAATTTTTCAAATCCAACT
TTTATATCTTCGAAGACACAATTTCCTCAAATCTTGTCGGCCATCCCCTT
CCCACCCGTCATCGTTGAATTTTTGTCTATTTGTGCACCAACATTGAGTT
TGTTCATACCCGCATTGATATTGTTAATCAAAACAAAAGTTAAAATGACG
GGATGAAGTTCCAACATTTCGAAGGAAAAGGCAGCGTGCTGGCCAATAAA
AAAGAGCTTTTTATCAAAGCTAGTTCAAAACTGTACTTTTAAAGCTGCGA
ATTTGCGCGCAAAGGTGAAAGCAAGTGAATTCATATGCTTTCAGTGGAGT
TTGTGGACAAAATCAGAAAGAAATTGGCTGAAAGGATTTTCGTCTCAATA
CTTGATTTTTTATCGGCATGTAGTTGGACCCCCCCACCCCCTTCAGGGTT
CGAATTATAAATTTTAGGAGCTTCGCTATTTTTCCGAGCGAAGCAAGGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCCCCCCCCCCCACCCGGAA
CGGCCATTCTTGCCATCAATGCGCAAATTTGTGCCAAAAACTGCCTAAAA
ATAGGGTTTTTTGGACTGCAATATTGCTTCATTAGTTTTCTCTGATTTTT
GGCAGAAATATAGAGGGCAAGGTGCTATAAAAGATGGCTAAAGTGATTTT
TCCTGGAAAATGTTTGTTTGCCATAAAATATGGATTTTCGTATTTGGGGA
AATTCCCTTTTACCATTTGCAAGGAAATTAAGCTTTCTCGGGATCAGCTG
ATTGGTTTTTTCTGATTTTTGGCACAATGATGCAAAATGGCAATGCCCAA
AATGTGACGGAGCCCAATTTTAGAGAAAAAAAATGTTCCGGATGAAAATG
CCGGAAATTGCAGTTTTTCTGGGTTTTCATTAGACTTTTTCCTTACAATT
GGTTGTTTTTTCATTCAAAAACATTATTATATTAATAGCAATGCCCACCA
TCAAGCATGTTTCGATTTTCAATAAAATTGATTTTTGAAGCCAGAACTAC
TTAAAAATCGCCGGAACAAGCTATCTTCGCCGAAAAGACAGTATTTCTTG
AATTTCTCGAGCTTTACTTTATATTTTTTATGAAATTTTGCACACTAATG
CAAAATGACAATACCCGAAATGTGACAGAGCCCGATTAAAAAAAAAAAAA
AAATTTGCCGGAAAAACTGTTTTTTTGACATTTTCTCGAATTTTCATCAT
TAGTTTTTTCTGATTTTTTGCAGAAAGATGCGTATTCGCAATGCTCAAAA
CATGTTCGATTTTTGAGGAAAAATTTTATCCGGTTGAAAATATGTTTTTC
ACACAAAAACATTATTGATAACAATGCTCATCATCAAGCATGATTCAATT
GTCAATAAAACTTATTTTTGCGACCAGAACTTTCTATTTATTTTTCCCCT
ACAACCCTTCCCTCTCCCCTCATCAACAATCAATGATGAATTTATTGCAT
TTTGCATTTTTGCTAAACGCTATATTTTCTGACAGATTTTTTTCATTTTT
CTCCTCGCATTGCTATCTAATTTTCATCATCAGCTAGTGTTTGTTTTCAT
TCAAAATTACCAGACGCCGATTGGAGAATTAGTGACTAACCGCCTATCGC
CCGATGGGATTAACAAAAATAAAGGGTGTAACTTGCTGCACGGGTGACAT
CAAACGTTCCATCGGGTTCCACTACAGATTTTTTCATATTTCAATTTAAA
AGCCTACTTGGTGCGAAAGAGAAATTGTGTATTTTGTAATACGCCGTTCA
TTAACTCAAATCAAATGACTTTGGAGGTTCAGTGAAATGGTGGCCAAATT
GCTGTCCCATGTTTGGTTAGATAGTCCCAAGTTAGAACAGTTGACGGTAC
TTTGCCATGTTTGTTTTCAATTGCTTCGACTGTTTTAAAAACTATAACAA
ATGACCCAATGTTTATGCCTCGGGTTGTATTTGTTTGACGGCCCGTGTGG
CCCACAAATTTTGCAGATGGCTGGTTTTTTCTGTCGCTTTATATTATGGA
GATAAAAAATTTCGGGATTATTGGTGAAAAAGTTTAGAAATTATCTCCGT
TATTTTTTAAATGTAAACTTGCAAGCCATAGCAAAAATAAAGATGGCTGA
CAAAACAGCGATGGGAGAAGGGTTGAATATTCCACGGTGTTTGGAAGGCT
CCCCTTATAGCTCAGCAAAAAGCCAAGTATATAACCTTCATCAAAATTTA
ATAATAATCTCTCTGATTCTTCATTAAAAATTTCGATTATCTGTTTTTAT
TGAATTTTGTTATTTTGGATAGGTAAAATTTCAGCTTTTTAAACATAACT
TTTGATTAAATGAACCAATTTTAAATTTTTTTTCCTACAAAATTTGAGTT
GATCTTTCCTCTATAGAATAAAAAAGAATCAACAAAAGTTCTTTAACTGT
AAGCTCACAATATCTTGACAAATATGTTTACTTTTTCTTGCCGCACCCAG
TATTGAAACAGGGGGCCTGAAAAAAAGAAAACTTTATAACTTGTGTTTTT
TTAATAATTTAATGATTTCTCTCGTGGAGATAGTTAGGAAATAATTAAAG
AACTAGAACAAAAGTTGTTTTGATTCATTTTGAAGTGTTGCCCCTTCTGC
ATTGACATTTTAAAACGTTTTCTGGGGGTCTTTTTCTGGAAAACGCTGAG
CGCACATATTTTCTGATGATTAAATGCCAGCCATTTAACGATGGCTGCCC
AATGTTTTCAATCAAGGTGTCAATCAACAATATTATGCCATGAATATCAA
GAAAACCATGATTGCCAAAAAATGTGTTACACTTTCTTATTTTGACACAT
GGAGGTATGATTTACATGAAAGCTGCCCAAAGAAATCAAGGCTTAATTTG
CTTACCACCTCATAAAAAAGTCAGTAAGTACAGCATCTTTCAAAAATCAC
TCAAAATTTTACTAATAACTTTTTAATAACTCTCTGACTAAATGAATAAT
TTTCTCATTTTAGGAATTGACTTTAAAATCAAAACTATTGAAATTGATGG
GAAAAAGATAAAGTTACAAATATGGTAGGTATTTAATTTAGAAAAATTTA
TGATATATTTGTTATCTCAAAGTAGAAACTGAACAAACCTACTTCATTTT
TCTTGCTAAACCTTTCAAACCTGATACTTATTTCTGATGATTATACAATT
CAGTCCTTGTTGAATAGACAATTGGCTACCCTTCTTTTTAGGACCAACCC
TGATTAATTACTTTAATGGGATAAATTTTCGCGGGGATTAATTTTCGCGG
ATTTCGCGGATTTGGGTGTCATCCGCGAAAATAAGTCCCATTGGAAATTT
GAAAAAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTC
CGCGAAAATTAATCCCCGCGAAATCTTAAAATTTCGCGGATGAGCTCAAC
CGCGAAATTTAATCCCCGCGAAAATTTATCCCATTAAAGTACTTGATTTA
TTTATTTTAACGAGAAATTATTTGGTATTTCACTAATTGCTCAGCACCTC
ACTAGTAAACATAGATTGACCCCCCAGTCTTATGGTCTAAGATCATTTCA
AAAGATTGTCCTAATGGGAGTGTTTTTGTTTTATATTTCTTATAATGTGG
TTGTCATTTAAAGAGGTATTGTACAAAAAGCACATCTAGGCTAAAATGGA
AATGTCTTTGATAAAGAAACATTCTACCTGACTTTCTTTTCATAGGTTTT
TAATTCTTTTAACATAAGCAGAAGAAACAGATAAATAAAGTGTTGGATAT
ATTGCAATGATCTTCTATCTTCTTCAATAATTCTCCAAGAAAACCTTTGC
TAGGGTTTAACTAAAAGTTGCTGATTTCTTGACAGGGATACAGCAGGACA
AGAAAGATTTCACACAATCACTACGTCTTATTACAGAGGTGCCATGGTAT
GTATTTACTTGAACCTTGTCTCATTGGTAATTTGTTAGCAAGTAAAGATA
AACCTAAGGAGCTAAATCCCAAAAACAATCACATTCTGGGTTTTCTCACC
AGAGATGAAGTTTGCCAATTGATCTAACCTCAAAATACCCCAAAAGAACC
ATATTTTTAAATTATATTATTTTTTATAATATGCTAAAATTTTAATAATA
CCTAAAATTACTGATTTTCGTCAATTTGTAATCTTTTTTAATGAATTTTT
CGTGATTTCTCAAAATTTGTCATAAGTTTTCAACAAAAAAATTTTAAACT
TTCTCATTTAAAAAAAATTTCTTAAGTCTAATTTAATTATTTTGGCATTC
AGGCAATTCAAAAAGTTTAAAAGTATAAATTTTTGCAAGAAATGGATATT
ATGTTTAAAAAATTAGCACTATTGAGAAAAATGGTCCCGAGAAGACAAAA
TTTGTCCTGAGAAGACCAAAATTCTGTGGTCTCTGTCAAAATGTCCATAC
ACATGTACTAAAATACCACTTCTCAAAAATGGGGTGGTGGTATGAAAAAA
GTAGTACTCGTATATGTCTGAAATTTAATATAGACCCCCCTCCCCTGTTT
GAACTGATACTCTGACATTTTACTTTTTACCATCATCAGGGCATCATGTT
GGTTTATGACATAACACAAGAAAAGACATTTGATAATATTGCTAAATGGC
TACGAAACATCGACGAGGTAATGCCTGCATGCAAAGATTTAACTGGGATT
TTCAAAGTTCCCAATAAAAGTAAAATTCCAAATTATCTGGTCAAAAACCT
TTTTTCAGGTGGGGTTGAGAAACTTTTCAGAATTTAGGTGAGGGTGGGGA
TGTCCCAAGAAGGTGGGCGGTGGGTTGGGATAAATTTCAGGTTGTGGTTA
CCCTATGCAGGAGGTTGACTTTATTCAGGTGCGAAATTATAACTAAAAAG
GCTTTTCTTTTGCTTCCTCATATAGTGTGACCGCTCTAAAATGATTATTT
ATTTGGTCGTATTGAATTACGGTTACGGTACACATTTTAATCTCTGTGAT
TTTCTTGTAGAAAATGCAATAAAGTTCTGCTTGGCCTTTTCGTTGACTAA
AGACTAAAAACATTCGCTCTTTATTAGCACGCAAGTGAAGGTGTTGAAAG
AATGATTCTCGGCAACAAATGTGATATGGAAGATAAACGAATGGTCAACA
AAGAGAGGGGAGAAGGAGTAAGAATATTCTGTTCGTTGGGAAAAAGTCTA
CAGTAAAATCAGAGATTATCCAGTGCCCCTTGAATCCTAAACATTTAATT
AATGATCAAAATGTCAAATGCCTGAAACCTTACTATTGTCCGGAAATTTT
TTAGCGATGAAAATCGGTTCTTTAGCGGAAAAGATTTAAGGAAACGTAAT
ACCTCGTTGAGAAGATAATTTTGAGCGGCTTAATATGAGACTTTCAATAA
CTTTGAACCCCACTGATTTTAAATATGTATTAAGATTTTCTCTTTTAGCT
CAAAAGCGTCTCGCAAAAGGTCTCGAGCATTTTTCGGTCAACTTTCATTT
GATATAATTTCAGATTGCCCGCGAACACGGAATCAAATTTTTCGAAACCA
GTGCAAAAGAAAATATAAACGTTGAAGAAGCTTTCATGACTTTGACACAA
GATATTTTACGAAAACATTTGGCTGGAGCCTCTACGGACGATACAACCAA
AGGTGTTATTGTTGGTGATAAAAATAGTAGTCAGTCAAAAATGGGCGGTG
GTTGTTGTTAATAATACGTTATTATTATCACGATTTGTGTGATTTCGATT
TGGATTCGCTTTCAAAATCGATTGATCGTTAATGAAGCAGTCGGAGAAAG
TTTTTGTTGAAATCCCAAAAAATGTCGATGAAAATGCTATGGATACCGGA
TCGGAGGAAATAATAGACAAAATGGTCACAAAATGCACTTTACAGATGGA
ATCGGCTTATTAGAAAGCATCATTCATGTCAGAAAATCTAGTGATGATTT
TATCTAAATTTTTAGAATAAGTATTTGTTTTGTTTTGAGTCACAATCAAG
TTCAATATACACTTTATGCTCATAAGTTAATTCCCTTTTTATAGAATCTT
TCAGAATCTAGCCAATCCAAGATCACCCAATATTTTGTATGGTTTCTCTT
GTTTTCCTTTGCATTTTATTTTATTTCGAGATAAAGCGCGGAAGAAGAAG
TTTTTGGTCCCATGGTCTATTTATTAGTTTAGTATTTAGTATAATTATTT
TTTCAAAGAAATAGATTTCCTTTTTTTTCTTATAATTTTTCTTTGTTGCA
ATATATATTTTGTACGTTAATTATGGTTGACTAGTTAGATTGTAATCTTC
AATTTATCAATTAGTCATTAAATTTTGCTTTCTACGTCTTTTTTAACGGA
CTTAAAATATGCAAAAATTTCAGAATAATAAACCACGCACACTCTAATCT
TGAATAGTTAACGGTTTTCAATTTCAATACAACAGGAC

Coding sequence (CDS) from alignment at scaffold_153:81113..92050-

>TCONS_00049194 ID=TCONS_00049194|Name=TCONS_00049194|organism=Clytia hemisphaerica|type=CDS|length=3690bp|location=Sequence derived from alignment at scaffold_153:81113..92050- (Clytia hemisphaerica)
ATTGCCCGCGAACACGGAATCAAATTTTTCGAAACCAGTGCAAAAGAAAA
TATAAACGTTGAAGAAGCTTTCATGACTTTGACACAAGATATTTTACGAA
AACATTTGGCTGGAGCCTCTACGGACGATACAACCAAAGGTGTTATTGTT
GGTGATAAAAATAGTAGTCAGTCAAAAATGGGCGGTGGTTGTTGTTAACA
CGCAAGTGAAGGTGTTGAAAGAATGATTCTCGGCAACAAATGTGATATGG
AAGATAAACGAATGGTCAACAAAGAGAGGGGAGAAGGAGGCATCATGTTG
GTTTATGACATAACACAAGAAAAGACATTTGATAATATTGCTAAATGGCT
ACGAAACATCGACGAGGGATACAGCAGGACAAGAAAGATTTCACACAATC
ACTACGTCTTATTACAGAGGTGCCATGGAATTGACTTTAAAATCAAAACT
ATTGAAATTGATGGGAAAAAGATAAAGTTACAAATATGATGGCTAAAAAA
GCATACGATTACTTGTTCAAACTTCTGCTTATTGGAGATAGTGGAGTTGG
AAAAACTTGTTTACTGTTCAGATTTTCAGATGATGCCTTCAATACAACAT
TTATTTCTACAATAGATTGCCCGCGAACACGGAATCAAATTTTTCGAAAC
CAGTGCAAAAGAAAATATAAACGTTGAAGAAGCTTTCATGACTTTGACAC
AAGATATTTTACGAAAACATTTGGCTGGAGCCTCTACGGACGATACAACC
AAAGGTGTTATTGTTGGTGATAAAAATAGTAGTCAGTCAAAAATGGGCGG
TGGTTGTTGTTAACACGCAAGTGAAGGTGTTGAAAGAATGATTCTCGGCA
ACAAATGTGATATGGAAGATAAACGAATGGTCAACAAAGAGAGGGGAGAA
GGAGGCATCATGTTGGTTTATGACATAACACAAGAAAAGACATTTGATAA
TATTGCTAAATGGCTACGAAACATCGACGAGGGATACAGCAGGACAAGAA
AGATTTCACACAATCACTACGTCTTATTACAGAGGTGCCATGGAATTGAC
TTTAAAATCAAAACTATTGAAATTGATGGGAAAAAGATAAAGTTACAAAT
ATGATGGCTAAAAAAGCATACGATTACTTGTTCAAACTTCTGCTTATTGG
AGATAGTGGAGTTGGAAAAACTTGTTTACTGTTCAGATTTTCAGATGATG
CCTTCAATACAACATTTATTTCTACAATAGATTGCCCGCGAACACGGAAT
CAAATTTTTCGAAACCAGTGCAAAAGAAAATATAAACGTTGAAGAAGCTT
TCATGACTTTGACACAAGATATTTTACGAAAACATTTGGCTGGAGCCTCT
ACGGACGATACAACCAAAGGTGTTATTGTTGGTGATAAAAATAGTAGTCA
GTCAAAAATGGGCGGTGGTTGTTGTTAACACGCAAGTGAAGGTGTTGAAA
GAATGATTCTCGGCAACAAATGTGATATGGAAGATAAACGAATGGTCAAC
AAAGAGAGGGGAGAAGGAGGCATCATGTTGGTTTATGACATAACACAAGA
AAAGACATTTGATAATATTGCTAAATGGCTACGAAACATCGACGAGGGAT
ACAGCAGGACAAGAAAGATTTCACACAATCACTACGTCTTATTACAGAGG
TGCCATGGAATTGACTTTAAAATCAAAACTATTGAAATTGATGGGAAAAA
GATAAAGTTACAAATATGATGGCTAAAAAAGCATACGATTACTTGTTCAA
ACTTCTGCTTATTGGAGATAGTGGAGTTGGAAAAACTTGTTTACTGTTCA
GATTTTCAGATGATGCCTTCAATACAACATTTATTTCTACAATAGATTGC
CCGCGAACACGGAATCAAATTTTTCGAAACCAGTGCAAAAGAAAATATAA
ACGTTGAAGAAGCTTTCATGACTTTGACACAAGATATTTTACGAAAACAT
TTGGCTGGAGCCTCTACGGACGATACAACCAAAGGTGTTATTGTTGGTGA
TAAAAATAGTAGTCAGTCAAAAATGGGCGGTGGTTGTTGTTAACACGCAA
GTGAAGGTGTTGAAAGAATGATTCTCGGCAACAAATGTGATATGGAAGAT
AAACGAATGGTCAACAAAGAGAGGGGAGAAGGAGGCATCATGTTGGTTTA
TGACATAACACAAGAAAAGACATTTGATAATATTGCTAAATGGCTACGAA
ACATCGACGAGGGATACAGCAGGACAAGAAAGATTTCACACAATCACTAC
GTCTTATTACAGAGGTGCCATGGAATTGACTTTAAAATCAAAACTATTGA
AATTGATGGGAAAAAGATAAAGTTACAAATATGATGGCTAAAAAAGCATA
CGATTACTTGTTCAAACTTCTGCTTATTGGAGATAGTGGAGTTGGAAAAA
CTTGTTTACTGTTCAGATTTTCAGATGATGCCTTCAATACAACATTTATT
TCTACAATAGATTGCCCGCGAACACGGAATCAAATTTTTCGAAACCAGTG
CAAAAGAAAATATAAACGTTGAAGAAGCTTTCATGACTTTGACACAAGAT
ATTTTACGAAAACATTTGGCTGGAGCCTCTACGGACGATACAACCAAAGG
TGTTATTGTTGGTGATAAAAATAGTAGTCAGTCAAAAATGGGCGGTGGTT
GTTGTTAACACGCAAGTGAAGGTGTTGAAAGAATGATTCTCGGCAACAAA
TGTGATATGGAAGATAAACGAATGGTCAACAAAGAGAGGGGAGAAGGAGG
CATCATGTTGGTTTATGACATAACACAAGAAAAGACATTTGATAATATTG
CTAAATGGCTACGAAACATCGACGAGGGATACAGCAGGACAAGAAAGATT
TCACACAATCACTACGTCTTATTACAGAGGTGCCATGGAATTGACTTTAA
AATCAAAACTATTGAAATTGATGGGAAAAAGATAAAGTTACAAATATGAT
GGCTAAAAAAGCATACGATTACTTGTTCAAACTTCTGCTTATTGGAGATA
GTGGAGTTGGAAAAACTTGTTTACTGTTCAGATTTTCAGATGATGCCTTC
AATACAACATTTATTTCTACAATAGATTGCCCGCGAACACGGAATCAAAT
TTTTCGAAACCAGTGCAAAAGAAAATATAAACGTTGAAGAAGCTTTCATG
ACTTTGACACAAGATATTTTACGAAAACATTTGGCTGGAGCCTCTACGGA
CGATACAACCAAAGGTGTTATTGTTGGTGATAAAAATAGTAGTCAGTCAA
AAATGGGCGGTGGTTGTTGTTAACACGCAAGTGAAGGTGTTGAAAGAATG
ATTCTCGGCAACAAATGTGATATGGAAGATAAACGAATGGTCAACAAAGA
GAGGGGAGAAGGAGGCATCATGTTGGTTTATGACATAACACAAGAAAAGA
CATTTGATAATATTGCTAAATGGCTACGAAACATCGACGAGGGATACAGC
AGGACAAGAAAGATTTCACACAATCACTACGTCTTATTACAGAGGTGCCA
TGGAATTGACTTTAAAATCAAAACTATTGAAATTGATGGGAAAAAGATAA
AGTTACAAATATGATGGCTAAAAAAGCATACGATTACTTGTTCAAACTTC
TGCTTATTGGAGATAGTGGAGTTGGAAAAACTTGTTTACTGTTCAGATTT
TCAGATGATGCCTTCAATACAACATTTATTTCTACAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031237XLOC_031237Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049194-proteinTCONS_00049194-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049194-exon-scaffold_153-1575043694:90724..92050TCONS_00049194-exon-scaffold_153-1575043694:90724..92050Clytia hemisphaericaexon
TCONS_00049194-exon-scaffold_153-1575043694:84827..84887TCONS_00049194-exon-scaffold_153-1575043694:84827..84887Clytia hemisphaericaexon
TCONS_00049194-exon-scaffold_153-1575043694:83605..83665TCONS_00049194-exon-scaffold_153-1575043694:83605..83665Clytia hemisphaericaexon
TCONS_00049194-exon-scaffold_153-1575043694:82884..82961TCONS_00049194-exon-scaffold_153-1575043694:82884..82961Clytia hemisphaericaexon
TCONS_00049194-exon-scaffold_153-1575043694:82384..82473TCONS_00049194-exon-scaffold_153-1575043694:82384..82473Clytia hemisphaericaexon
TCONS_00049194-exon-scaffold_153-1575043694:81113..82037TCONS_00049194-exon-scaffold_153-1575043694:81113..82037Clytia hemisphaericaexon
TCONS_00049194-exon-scaffold_153-1510915933:90724..92050TCONS_00049194-exon-scaffold_153-1510915933:90724..92050Clytia hemisphaericaexon
TCONS_00049194-exon-scaffold_153-1510915933:84827..84887TCONS_00049194-exon-scaffold_153-1510915933:84827..84887Clytia hemisphaericaexon
TCONS_00049194-exon-scaffold_153-1510915933:83605..83665TCONS_00049194-exon-scaffold_153-1510915933:83605..83665Clytia hemisphaericaexon
TCONS_00049194-exon-scaffold_153-1510915933:82884..82961TCONS_00049194-exon-scaffold_153-1510915933:82884..82961Clytia hemisphaericaexon
TCONS_00049194-exon-scaffold_153-1510915933:82384..82473TCONS_00049194-exon-scaffold_153-1510915933:82384..82473Clytia hemisphaericaexon
TCONS_00049194-exon-scaffold_153-1510915933:81113..82037TCONS_00049194-exon-scaffold_153-1510915933:81113..82037Clytia hemisphaericaexon
TCONS_00049194-exon-scaffold_153-1491911889:90724..92050TCONS_00049194-exon-scaffold_153-1491911889:90724..92050Clytia hemisphaericaexon
TCONS_00049194-exon-scaffold_153-1491911889:84827..84887TCONS_00049194-exon-scaffold_153-1491911889:84827..84887Clytia hemisphaericaexon
TCONS_00049194-exon-scaffold_153-1491911889:83605..83665TCONS_00049194-exon-scaffold_153-1491911889:83605..83665Clytia hemisphaericaexon
TCONS_00049194-exon-scaffold_153-1491911889:82884..82961TCONS_00049194-exon-scaffold_153-1491911889:82884..82961Clytia hemisphaericaexon
TCONS_00049194-exon-scaffold_153-1491911889:82384..82473TCONS_00049194-exon-scaffold_153-1491911889:82384..82473Clytia hemisphaericaexon
TCONS_00049194-exon-scaffold_153-1491911889:81113..82037TCONS_00049194-exon-scaffold_153-1491911889:81113..82037Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_153supercontigscaffold_153:81113..92050 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
223.218	229.403	214.614	218.01	78.242	54.4171	122.565	126.769	99.4424	100.333	77.6187	56.6438	53.6527	39.8698	52.1939	51.2066	76.7711	80.3041	41.9328	53.2002	85.3285	83.3156	112.699	105.922	41.5522	53.7832	111.859	92.9084	117.694	117.127
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00049194 vs. Swiss-Prot (Human)
Match: RAB10 (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 308.531 bits (789), Expect = 2.172e-98
Identity = 146/173 (84.39%), Postives = 162/173 (93.64%), Query Frame = 1 
Query: 1201 MAKKAYDYLFKLLLIGDSGVGKTCLLFRFSDDAFNTTFISTIGIDFKIKTIEIDGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITQEKTFDNIAKWLRNIDEHASEGVERMILGNKCDMEDKRMVNKERGEGIAREHGIKFFETSAKENINVEEAFMTLTQDILRK 1719
            MAKK YD LFKLLLIGDSGVGKTC+LFRFSDDAFNTTFISTIGIDFKIKT+E+ GKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDIT  K+F+NI+KWLRNIDEHA+E VERM+LGNKCDM+DKR+V K +GE IAREHGI+FFETSAK NIN+E+AF+TL +DILRK
Sbjct:    1 MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRK 173
The following BLAST results are available for this feature:
BLAST of TCONS_00049194 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB102.172e-9884.39Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
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