TCONS_00049194-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00049194-protein
Unique NameTCONS_00049194-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length204

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00049194-protein ID=TCONS_00049194-protein|Name=TCONS_00049194-protein|organism=Clytia hemisphaerica|type=polypeptide|length=204bp
MAKKAYDYLFKLLLIGDSGVGKTCLLFRFSDDAFNTTFISTIGIDFKIKT
IEIDGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITQEKTFDNI
AKWLRNIDEHASEGVERMILGNKCDMEDKRMVNKERGEGIAREHGIKFFE
TSAKENINVEEAFMTLTQDILRKHLAGASTDDTTKGVIVGDKNSSQSKMG
GGCC
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031237XLOC_031237Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00049194TCONS_00049194Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR00449RASTRNSFRMNGcoord: 10..31
score: 54.94
coord: 33..49
score: 34.25
coord: 113..126
score: 38.09
coord: 51..73
score: 56.7
coord: 148..170
score: 46.19
NoneNo IPR availableSMARTSM00173ras_sub_4coord: 7..173
e-value: 4.3E-31
score: 119.3
NoneNo IPR availableSMARTSM00174rho_sub_3coord: 12..173
e-value: 2.1E-13
score: 51.3
NoneNo IPR availableSMARTSM00176ran_sub_2coord: 15..199
e-value: 8.3E-6
score: 33.0
NoneNo IPR availableSMARTSM00177arf_sub_2coord: 1..174
e-value: 0.0045
score: -0.1
NoneNo IPR availableSMARTSM00175rab_sub_5coord: 10..173
e-value: 7.5E-107
score: 370.9
NoneNo IPR availableGENE3D3.30.70.1390coord: 9..73
e-value: 4.5E-31
score: 106.2
NoneNo IPR availableGENE3D3.40.50.300coord: 74..171
e-value: 4.6E-39
score: 132.1
NoneNo IPR availablePROSITEPS51419RABcoord: 5..204
score: 37.47
NoneNo IPR availableCDDcd01867Rab8_Rab10_Rab13_likecoord: 7..173
e-value: 5.50209E-118
score: 334.236
IPR005225Small GTP-binding protein domainTIGRFAMTIGR00231TIGR00231coord: 8..165
e-value: 1.3E-32
score: 110.8
IPR001806Small GTPase superfamilyPFAMPF00071Rascoord: 11..171
e-value: 5.9E-67
score: 224.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 6..175

Blast
[Close]
BLAST of TCONS_00049194-protein vs. Swiss-Prot (Human)
Match: RAB10 (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 6.283e-108
Identity = 146/173 (84.39%), Postives = 162/173 (93.64%), Query Frame = 0 
Query:    1 MAKKAYDYLFKLLLIGDSGVGKTCLLFRFSDDAFNTTFISTIGIDFKIKTIEIDGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITQEKTFDNIAKWLRNIDEHASEGVERMILGNKCDMEDKRMVNKERGEGIAREHGIKFFETSAKENINVEEAFMTLTQDILRK 173
            MAKK YD LFKLLLIGDSGVGKTC+LFRFSDDAFNTTFISTIGIDFKIKT+E+ GKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDIT  K+F+NI+KWLRNIDEHA+E VERM+LGNKCDM+DKR+V K +GE IAREHGI+FFETSAK NIN+E+AF+TL +DILRK
Sbjct:    1 MAKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRK 173
The following BLAST results are available for this feature:
BLAST of TCONS_00049194-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RAB106.283e-10884.39Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
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