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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049190 ID=TCONS_00049190|Name=TCONS_00049190|organism=Clytia hemisphaerica|type=transcript|length=2421bpRun BLAST on NCBI protein sequence of TCONS_00049190-protein >TCONS_00049190-protein ID=TCONS_00049190-protein|Name=TCONS_00049190-protein|organism=Clytia hemisphaerica|type=polypeptide|length=364bp SLVMQDDPTPQQVSEPEESASVKHFTNLVAKEESKFRTSIDRWEKILEEKRun BLAST on NCBI transcript from alignment at scaffold_153:50117..61048- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00049190 ID=TCONS_00049190|Name=TCONS_00049190|organism=Clytia hemisphaerica|type=transcript|length=10932bp|location=Sequence derived from alignment at scaffold_153:50117..61048- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_153:50117..61048- >TCONS_00049190 ID=TCONS_00049190|Name=TCONS_00049190|organism=Clytia hemisphaerica|type=CDS|length=10950bp|location=Sequence derived from alignment at scaffold_153:50117..61048- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00049190 vs. Swiss-Prot (Human)
Match: DLGP5 (Disks large-associated protein 5 OS=Homo sapiens GN=DLGAP5 PE=1 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 1.165e-16 Identity = 40/108 (37.04%), Postives = 63/108 (58.33%), Query Frame = 2
Query: 62 SVKHFTNLVAKEESKFRTSIDRWEKILEEKTTPEQHHGNILAAIGQAQLFMRKRFNQFKELIELHKDKSAEKAAHASDLDGFWEMIYYQVEDVHKRFENLDALEKNGW 385
V +F N++ E K + W++ LE P+ I A+GQ +L M++RF QF+ L++ + K K +DLDGFW+M+ +Q+EDV +F NL LE++GW
Sbjct: 429 GVPYFRNILQSETEKLTSHCFEWDRKLE-LDIPDDAKDLIRTAVGQTRLLMKERFKQFEGLVDDCEYKRGIKETTCTDLDGFWDMVSFQIEDVIHKFNNLIKLEESGW 535 The following BLAST results are available for this feature:
BLAST of TCONS_00049190 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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