TCONS_00049134 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049134
Unique NameTCONS_00049134
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length651

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049134 ID=TCONS_00049134|Name=TCONS_00049134|organism=Clytia hemisphaerica|type=transcript|length=651bp
gctctaacttgggactatctgacaaaacattggatggcaattcggccacc
attttaccgaacctccaaagtcaggTGGGCGGTGCGGTGGGAATTCTCTA
ATCGGCGtggtccggtcattttgaataaagacaaaaaagtttaaaagggc
gcattatcagtgaaagttatcgtgacatgttatgacagaaagtatgattg
atgaACTTGGTGGagctatcaaaacaaatttgtttttaaagagatATAAc
agaaagtgaaaatacaggccagatatcaacagtcccatgtttcgactaAT
CGTCCCAAGTTATAGCAGTTGATGGTACCAATTGAACGTTCAATTGTgat
caaagtaatcaataatgatcgatgATAATCAAAGGTGGTTAGTGACCATT
TTCGATTTGCTCAATCATTTCGATTACTTTTCAATTACCTTTGTAAAGGT
AACCTTACCTTACGATTGTATCAATAccttcgattttatcaaattagTTT
CCTGTAGCAGCacgtcaaaataatctgaaatcaAGTTTATCTCGCCCAAT
TGAAACAACGCAATTCACGCGCGAAATCCACTTTCCTTTTCTCTGACTAA
TCAGAATGTGCGGTATGAGTTACTTGAGAAAACCCAGGCGCCAGGGAGGA
G
Run BLAST on NCBI

transcript from alignment at scaffold_152:93261..93911

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049134 ID=TCONS_00049134|Name=TCONS_00049134|organism=Clytia hemisphaerica|type=transcript|length=651bp|location=Sequence derived from alignment at scaffold_152:93261..93911 (Clytia hemisphaerica)
CTCCTCCCTGGCGCCTGGGTTTTCTCAAGTAACTCATACCGCACATTCTG
ATTAGTCAGAGAAAAGGAAAGTGGATTTCGCGCGTGAATTGCGTTGTTTC
AATTGGGCGAGATAAACTtgatttcagattattttgacgtGCTGCTACAG
GAAActaatttgataaaatcgaaggTATTGATACAATCGTAAGGTAAGGT
TACCTTTACAAAGGTAATTGAAAAGTAATCGAAATGATTGAGCAAATCGA
AAATGGTCACTAACCACCTTTGATTATcatcgatcattattgattacttt
gatcACAATTGAACGTTCAATTGGTACCATCAACTGCTATAACTTGGGAC
GATtagtcgaaacatgggactgttgatatctggcctgtattttcactttc
tgTTATatctctttaaaaacaaatttgttttgatagctCCACCAAGTtca
tcaatcatactttctgtcataacatgtcacgataactttcactgataatg
cgcccttttaaacttttttgtctttattcaaaatgaccggaccaCGCCGA
TTAGAGAATTCCCACCGCACCGCCCAcctgactttggaggttcggtaaaa
tggtggccgaattgccatccaatgttttgtcagatagtcccaagttagag
c
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031224XLOC_031224Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049134-exon-scaffold_152-1491911889:93261..93911TCONS_00049134-exon-scaffold_152-1491911889:93261..93911Clytia hemisphaericaexon
TCONS_00049134-exon-scaffold_152-1510915933:93261..93911TCONS_00049134-exon-scaffold_152-1510915933:93261..93911Clytia hemisphaericaexon
TCONS_00049134-exon-scaffold_152-1575043694:93261..93911TCONS_00049134-exon-scaffold_152-1575043694:93261..93911Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_152supercontigscaffold_152:93261..93911 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.372678	0.338301	1.31783	0.261352	0.655516	0.691292	0.521755	0.660759	0.485506	0.528143	0.172516	0.555388	0.0723702	0.248619	0.204371	0.240661	0.125551	0	0	0.373013	0.449462	0.616139	0.110716	0.0849348	0.217107	0.615851	0.330347	0.899691	0.422098	0.627996
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049134 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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