TCONS_00049128 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049128
Unique NameTCONS_00049128
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length317

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049128 ID=TCONS_00049128|Name=TCONS_00049128|organism=Clytia hemisphaerica|type=transcript|length=317bp
GGAAAAGCCAGAAGCTATTAAAGACGTTTTTTGTATCGAAATACGTGGGA
ACACCCGAAACTAATCAGACACTAGACCCAAAAGACCAAATTGATGTCAT
CATTCCAATAAAAGTCGACCTTCGCAAATTGGAGGAGTACAATGACGACT
TTTCAATAAATGATATACAAAGAGAGATTGGTTTCGAGCTTAGTACAATT
GAAAAGATGGTGATTCTCTATCAGGATGGTTATCTCGTCAAAGATTCTGC
AAATACAAGAGgtCTTGCTGCATGGGATAATAAGGTAAAGTATCGGGCGG
TCAATATGGAATCTCAC
Run BLAST on NCBI

protein sequence of TCONS_00049128-protein

>TCONS_00049128-protein ID=TCONS_00049128-protein|Name=TCONS_00049128-protein|organism=Clytia hemisphaerica|type=polypeptide|length=105bp
KSQKLLKTFFVSKYVGTPETNQTLDPKDQIDVIIPIKVDLRKLEEYNDDF
SINDIQREIGFELSTIEKMVILYQDGYLVKDSANTRGLAAWDNKVKYRAV
NMESH
Run BLAST on NCBI

transcript from alignment at scaffold_152:154423..154937-

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049128 ID=TCONS_00049128|Name=TCONS_00049128|organism=Clytia hemisphaerica|type=transcript|length=515bp|location=Sequence derived from alignment at scaffold_152:154423..154937- (Clytia hemisphaerica)
GGAAAAGCCAGAAGCTATTAAAGACGTTTTTTGTATCGAAATACGTGGGA
ACACCCGAAACTAATCAGACACTAGACCCAAAAGACCAAATTGATGTCAT
CATTCCAATAAAAGTCGACCTTCGCAAATTGGAGGAGTACAATGACGACT
TTTCAATAAATGATATACAAAGAGAGATTGGTTTCGAGCTTAGTACAATT
GAAAAGATGGTGATTCTCTATCAGGATGGTTATCTCGTCAAAGATTCTGC
AAATACAAGAGGTAAGATTATTTTAAAATGATTTCTGGCTTTAGAAAAAT
CCAAAGCTTGTCTGCAAAATACCAACGAAACAGGTGGCCGACCTAAAATT
CTGAAAATCACGATAAATTTTCGGGTGATTTTTTTATCTTCTGTGACTAT
TCCATAGCACAAACATACAAATAATGATTGTTTGATATAGCTTTACTTTT
ATTTTATAGGTCTTGCTGCATGGGATAATAAGGTAAAGTATCGGGCGGTC
AATATGGAATCTCAC

Coding sequence (CDS) from alignment at scaffold_152:154423..154937-

>TCONS_00049128 ID=TCONS_00049128|Name=TCONS_00049128|organism=Clytia hemisphaerica|type=CDS|length=630bp|location=Sequence derived from alignment at scaffold_152:154423..154937- (Clytia hemisphaerica)
GTCTTGCTGCATGGGATAATAAGGTAAAGTATCGGGCGGTCAATATGGAA
TCTCACAAAAGCCAGAAGCTATTAAAGACGTTTTTTGTATCGAAATACGT
GGGAACACCCGAAACTAATCAGACACTAGACCCAAAAGACCAAATTGATG
TCATCATTCCAATAAAAGTCGACCTTCGCAAATTGGAGGAGTACAATGAC
GACTTTTCAATAAATGATATACAAAGAGAGATTGGTTTCGAGCTTAGTAC
AATTGAAAAGATGGTGATTCTCTATCAGGATGGTTATCTCGTCAAAGATT
CTGCAAATACAAGAGGTCTTGCTGCATGGGATAATAAGGTAAAGTATCGG
GCGGTCAATATGGAATCTCACAAAAGCCAGAAGCTATTAAAGACGTTTTT
TGTATCGAAATACGTGGGAACACCCGAAACTAATCAGACACTAGACCCAA
AAGACCAAATTGATGTCATCATTCCAATAAAAGTCGACCTTCGCAAATTG
GAGGAGTACAATGACGACTTTTCAATAAATGATATACAAAGAGAGATTGG
TTTCGAGCTTAGTACAATTGAAAAGATGGTGATTCTCTATCAGGATGGTT
ATCTCGTCAAAGATTCTGCAAATACAAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031218XLOC_031218Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049128-proteinTCONS_00049128-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049128-exon-scaffold_152-1575043694:154677..154937TCONS_00049128-exon-scaffold_152-1575043694:154677..154937Clytia hemisphaericaexon
TCONS_00049128-exon-scaffold_152-1575043694:154423..154478TCONS_00049128-exon-scaffold_152-1575043694:154423..154478Clytia hemisphaericaexon
TCONS_00049128-exon-scaffold_152-1510915933:154677..154937TCONS_00049128-exon-scaffold_152-1510915933:154677..154937Clytia hemisphaericaexon
TCONS_00049128-exon-scaffold_152-1510915933:154423..154478TCONS_00049128-exon-scaffold_152-1510915933:154423..154478Clytia hemisphaericaexon
TCONS_00049128-exon-scaffold_152-1491911889:154677..154937TCONS_00049128-exon-scaffold_152-1491911889:154677..154937Clytia hemisphaericaexon
TCONS_00049128-exon-scaffold_152-1491911889:154423..154478TCONS_00049128-exon-scaffold_152-1491911889:154423..154478Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_152supercontigscaffold_152:154423..154937 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.328438	0.960837	0.371875	0	0.885835	0.966666	0	1.58126	0.830306	3.98146	0.665504	0.656214	1.74747	1.67816	0.790725	1.44579	0.493115	0.505427	1.04741	1.52218	0	0	1.21192	0	0	0.314714	0	0.48063	1.09362	0.37141
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049128 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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