TCONS_00049106 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049106
Unique NameTCONS_00049106
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length5801

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049106 ID=TCONS_00049106|Name=TCONS_00049106|organism=Clytia hemisphaerica|type=transcript|length=5801bp
ggggggtcttcaaaataataaaggACCTGCACTACGAtataatatcgaca
tccctcgtctaattctgacactcttctttagagaaaggaataatatgaaa
acttgaatcactgattgaaaaaggattattccttaTTATTATATTCCTTa
taattatgcagattgtggggaaattccctgtttttcatattttttttaaa
acaaaactttgtataacttttgatctagaaaaacAGTTGAGAATTtgatg
taatacatttttttgctcagagcCTGACATGTTTCACCACTAATGTAATT
TAGGGAGTCAAAATGGTATCatgttaaccctttaactgctgTTCGTATTT
TTAATAAGGGTTCAACCTATTTGCCactgaaaaaaatgaaggttcTACCT
ATTTGCTAGATGTCGGTATATGCCAACATGAGTGAACACAGAATTTATCA
TCACATTtagctttattttttgaaaaatatcagaaatatgTGTTTGAAAT
ATATTTGAATTATTCTACTGTGCTACCGCaacttggtctaatatcgacat
ccctcctctaatttcgacaccctttttatcagctgaaattaatagaaagg
ttgaaactgtttttctttgcttaatggtcagagaggaattattctttttc
aatcagtgattcaagctttcatattattcctgtctctaaaaaagggtgtc
ggaattaaacgagggatgtcgatattagaccaacttacgataTTTAATGA
AATCAGTGAAATCTAGTTCAAAATTGatcttttaataaattttaaaaaga
tgggTAAATAGGTTGAGATCTCTCTTATCAGCAAATGCCAACAcaggcaa
agaaatcgaaaatgctcttgTCGGCACATGCCGACAGCAGCACAGAAAGG
GTtaagcaaaaggtctattagggTAATTGTATATTGCGTATAAATTtatc
atagtgtgcaagggggttccaggtcccacctaaaaattcaggtcccacct
aacCCTAAATTTCCCACCTCCAatccagactcccagatcccagctaaaac
tACTATCCCCATGAAAAATTATACTAATACGAAGaaggtaaacaaaaatt
attgtcCATGAAAGGAAGATGCTAACGTATTACAAACACATTGCCATGCT
AATGCTTATATATTGCCAAACACTGCAATGGTtgtatttgatttgttttc
aaCGATACAATTGGCTTCTCAAAATAAGAAAGggtaaaagaaaacatttt
ggaaaatattttctgatATAGGGGGGTGGATACTAAAATCTAGGATATCA
TGATGTTTAGTGATGTGGTGGTATACCCAAaacacttttaatttttttag
tacCATTAGGTACTAAAATAGTAAAAGGGTGGTATCCAGACTAaaatttc
agaacttttttaGGAGATTGGCACTAAAATTAGTAATTTTAATAATaatc
tttttatgattttttcagaatttttgcaatttttcgaaaaaatttttgca
aaaatattctcattataagaaaatttcccaagttCAATTATATTTGCATT
CAATCAAATATCTTTAATGTTTGCTCAATTCAGAAGCAGCATTGTTTAAt
agatttttgaggaaaatagATATCATCTTGCATAAAATCAGCACTTGCGA
GGAAAATGGTTCTGAGAAGACAAAATTTGTCTCGAAAATACCAAAACTGG
GTGGTCTTTGtgtctttaaaatatttaatgCAAGGACTGGCAagggtact
aaaataccacttgTCAAAATTAAGGTGGTGGTATACAAGAAATTCTCCAA
AATACTTTAGTATGATTCATATTATGACCGAGATTTTAGTGCTGATCCCT
CCCCCTGAATAAATTAcagtataataataaaaaagagaaaagcttagaac
agtaaaaaaattatttataaaatataacagagataagaaaaaattatctt
tcacaatcaccaaaacaccaaaactcccacctaaagaaattaactctcac
cttaacttgtttctcccacaaggggtgcacactatgtttatggtctttat
tttatttctggtaaattgtaaaattgctgtatttaatttttgagcctcag
cTTGTAGCCAATGTTTCAGATTTTAGTCGCCTGGGTATACAGTATCATAG
TATCACCAGTACATAGTATATGTTTATAAGTTTTATTAAGCATATTAAAA
ACACATACCAggtaaaattgaaataataCTAATATCTGCTGCTACTCTAA
GCATTGTATATACTTTTAGGTAGAGCTCTACTTCTATTTCTATATGGTTG
AGTTGCAGCTGGCATGGATGCTCATTTTAGCAACTATAGACACTTTCAAT
GAGCGCCTAATAGGCTATGTGCTGTTGGGATTCAAAGAATTTTTATCCAC
ATCTGATGATGGCCTTGTGGGTGAAACACTGTGTAATGGTTGtttatgga
cctacctcggTGGGTGGAGGGTCCTTTAAGATTAACCAATGTTTGTTTGT
TAGTCCGTCCATCCATCCATTTgactgttaccagcttttctcgggattgg
ctcattagttttttctaatattttgcAAAGGTGATGTAAAATGGTGATTC
CCAAAAAGTGATGGAGccttgtgtgaaattgcttcattagttttttctga
ttttatgcaTAAAGATTGAGGGCAAGATCCTgtaaaaagtggctgaagca
gtttttttcggaaaatttttattggccataaaaatcagatttttttattt
agggaaattcccttatgtcatttttagggaaaaagagcatttctcgcgat
tggatTGATATTTCTTTCAAGATAATCAACTGGGTGTTCCTAAAAGGTAG
GGTACCCCAATTGGGCACCCATATAATTTACAAACCAGAATTAAATAACC
AAAAATTTGTGGAGGAAAGTCATCTAAGCCATGATTtatgaatctgaaaa
atatttcaattaatATTGCACGATGCAAAAGATATTCAAAGATACATATT
ACCATTATGGTCGAAACACATGGTGTATGAAATAAAGCTTTGTGACGGGG
TTTTGTATATGCATTATATGCATAACAAGCAATAAGCATAATATGTATAA
TATGCATAATATATGGGGTAGCAActtcaaaaataataacataattCAGC
CTATTGAAGTAAATCATTATGTTATTGTGTACATAATAGATTAAAAGAGT
GCAAAGAGGATGAAAGATCAAATGATTAAATTTTAACCTGGCagctttta
aaggttttctatTCCGATATATATAAGATAAACATGGCACCTTTGGGAAA
ATGACTCTTGTGACTAAAGTTTTAAAGCAATCTTAAGTATGATTTTTGTA
AATGATCAATCAAAGGTTTTCAGTATCTTAATCATGAACTCAAGCATCAG
TTTGTAAAATTTAGGGCAGAAAAGGGTACCCCACAAAATAGCCCAATTTG
GACCCCAATTAAGGGTACCCTACCTTTTTAGAAACACCCTGATCAGCTtc
gttttttcaattctttttgaattatattaCATTCGTGAATAAGCACAAAC
AGCCATAACCTAatgtaaattgtttcaaaagttGCTGCACTTTATTTCTA
CTGTAGATTGTTTCTAGACAGATATCTTCTGAATTCAATGCttttacaaa
atttgagctttaAAAAAGATTAGCTTCATTGTCTAGTTTATCATGTACTT
TAATAGATTTTACGAAAAATTAATGTTGACATCATTCtaaagtttgtaaa
atttatttcacCATCAGGAAATTACCTGGGgaaattttaagcctaaaaat
gcttAGCAATGCTAAATCTAAAAGTTCCTATAACATTTGTCATAAAGGAA
AATAATGTTTCTATGATATAATAACTATGATGACGTTTATATTTTCCCTT
TTGCTTTTATTATACAATTAGCAGAGACTAGCTGATCTAATCAAAAAGAA
TATGGTTTAAAAGACCTAGATTTATTTTGTTAATGAAAGAAAGTTTACTA
CATTGATGTTTGATACTGTAAAGAGACATGTCTTCAAAAGGGAAAGCTCC
ACCAAAAGGTTTCCAATATGTGGAAATTGAAATGTGGGAAGCAGTGAAGA
AagataaaaacagcaaaaaaccaGTCAATAAGCACAAGGGAGTATATGCA
TTCCATATGGATGACTGTATGTGTGGTTTAGCTGGATGGCCATGTAGTGA
AAGCGGTGTATGGAGCTGTTGCGCACAAAAAAGGCATAAAGGACCAAAAT
GGGAAAAGATTATTACAAGATTCTCGGTGTAGACCGCTCATGCACTGAAG
CAGAATTGAAAAAGGCCTATCGAAAATTGGCCTTGAAATATCATCCTGAC
AAGAATCAAGATGATGGAGCTTCAGAGAAATTCAAGGAAATTGGGGAAGC
ATACGAGATTTTGAAAGATCCAGACAAGAGGAAAATTTATGATCAATACG
GAGAAGAAGGACTGAAGGGTGGAATGGGCGGTCGTGGGGCGGATTTCTCT
GGATATGGTGGATTCAATTTCTCGTCTTTCGATCCtcatgaaactttcaa
acagttCTTTGGGGATAATGACCCTTTCAGAGAGTTTGAGTCTTTTGGAG
GTTTTGGAGGCCCTGGACGGAGTGGCTTCAGTAACTTCATGGGAGGAGCC
AACAATTTCTCAAATATGGGAGGCCATCACTCTGGGTTTGGTGGCAGTCC
TCAAAAAGATCCATCGGTCGAACATTTCCTTAATGTAACACTCGAGGAAA
TTCTACAGGGTACAACAAAGAAGATGAAAATCACCAGGGAAGTGTTAGTT
CCAGGTACCAACTCAACAAGAACTGAACCTAAAGTGCTAGAAATAACAGT
CAAGAAAGGCTGGAAGGAGGGAACTAAGATCACATTTCCAAACGAAGGGA
ACCAGACCACTGGTAATACACCTGCTGACATAGTTTTCATCATCAAGGAT
AAAGAACACGCTATCTTCACCAGGGACCGAGATAACAACTTATTATACAG
ACACAAATTAACGCTTAAACAAGCATTACTTGGTTGCACTATATCTGTCC
CTTCCCTAGAAGGCCCTCATTATGATATTGAACTGAAACAAGCTTCACCA
TCAAGCAAACGACTTTTGAAAGGATATGGTCTTCCAAAGCCAAAGAAACC
TCGGGAACGGGCTGACTTGATCGTTGAATTCGATATTGAATTTCCAAAGA
ATTTATCAGATGACACTAAACAACAGCTGCAACATATTTTACCAGAATGA
CTGAAAAGGTGCAACTCAAAGCTTTGACTTTTGAGAAAAAGTACAATTTG
CAACAAATTACCGTAATTGTTATACAAAGCTCTCCTGGACTTTGTTGTTG
AGCTGGGATAAAACTATTCATCATAAAAGAGTAGtgttcaaaaaaaagtt
tcgctgactatttaaaaataaatttgaacttGTTTTAGATTGTCAGATAT
TGAATGATTATTGACTGATATTAATGATTGATTGATATTTAGGTTTAATG
gagtatgaatttttttaaatttaagagAATTTCCTATTATCCTATTACTA
CatatttttagttgaaagtttcGAACATTACGtaatattttgtgattttt
tgttgAATTGTAATACTTTTTCTATTATTGTATTTATTATATAAAATGTA
ATTATTTTTAGGCACAGGAAATTATTAACTGGAttgtatttttgttattt
tgatctTGCATTGATTATTCTACGCATGGTTAAAGATCTTCTCCTCGATA
GCTATAATGGTAGAGAGTGAGTTGAGAGTTGAGATACTCTTATTAACGAA
A
Run BLAST on NCBI

protein sequence of TCONS_00049106-protein

>TCONS_00049106-protein ID=TCONS_00049106-protein|Name=TCONS_00049106-protein|organism=Clytia hemisphaerica|type=polypeptide|length=333bp
MGKDYYKILGVDRSCTEAELKKAYRKLALKYHPDKNQDDGASEKFKEIGE
AYEILKDPDKRKIYDQYGEEGLKGGMGGRGADFSGYGGFNFSSFDPHETF
KQFFGDNDPFREFESFGGFGGPGRSGFSNFMGGANNFSNMGGHHSGFGGS
PQKDPSVEHFLNVTLEEILQGTTKKMKITREVLVPGTNSTRTEPKVLEIT
VKKGWKEGTKITFPNEGNQTTGNTPADIVFIIKDKEHAIFTRDRDNNLLY
RHKLTLKQALLGCTISVPSLEGPHYDIELKQASPSSKRLLKGYGLPKPKK
PRERADLIVEFDIEFPKNLSDDTKQQLQHILPE
Run BLAST on NCBI

transcript from alignment at scaffold_152:41868..49515+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049106 ID=TCONS_00049106|Name=TCONS_00049106|organism=Clytia hemisphaerica|type=transcript|length=7648bp|location=Sequence derived from alignment at scaffold_152:41868..49515+ (Clytia hemisphaerica)
ggggggtcttcaaaataataaaggACCTGCACTACGAtataatatcgaca
tccctcgtctaattctgacactcttctttagagaaaggaataatatgaaa
acttgaatcactgattgaaaaaggattattccttaTTATTATATTCCTTa
taattatgcagattgtggggaaattccctgtttttcatattttttttaaa
acaaaactttgtataacttttgatctagaaaaacAGTTGAGAATTtgatg
taatacatttttttgctcagagcCTGACATGTTTCACCACTAATGTAATT
TAGGGAGTCAAAATGGTATCatgttaaccctttaactgctgTTCGTATTT
TTAATAAGGGTTCAACCTATTTGCCactgaaaaaaatgaaggttcTACCT
ATTTGCTAGATGTCGGTATATGCCAACATGAGTGAACACAGAATTTATCA
TCACATTtagctttattttttgaaaaatatcagaaatatgTGTTTGAAAT
ATATTTGAATTATTCTACTGTGCTACCGCaacttggtctaatatcgacat
ccctcctctaatttcgacaccctttttatcagctgaaattaatagaaagg
ttgaaactgtttttctttgcttaatggtcagagaggaattattctttttc
aatcagtgattcaagctttcatattattcctgtctctaaaaaagggtgtc
ggaattaaacgagggatgtcgatattagaccaacttacgataTTTAATGA
AATCAGTGAAATCTAGTTCAAAATTGatcttttaataaattttaaaaaga
tgggTAAATAGGTTGAGATCTCTCTTATCAGCAAATGCCAACAcaggcaa
agaaatcgaaaatgctcttgTCGGCACATGCCGACAGCAGCACAGAAAGG
GTtaagcaaaaggtctattagggTAATTGTATATTGCGTATAAATTtatc
atagtgtgcaagggggttccaggtcccacctaaaaattcaggtcccacct
aacCCTAAATTTCCCACCTCCAatccagactcccagatcccagctaaaac
tACTATCCCCATGAAAAATTATACTAATACGAAGaaggtaaacaaaaatt
attgtcCATGAAAGGAAGATGCTAACGTATTACAAACACATTGCCATGCT
AATGCTTATATATTGCCAAACACTGCAATGGTtgtatttgatttgttttc
aaCGATACAATTGGCTTCTCAAAATAAGAAAGggtaaaagaaaacatttt
ggaaaatattttctgatATAGGGGGGTGGATACTAAAATCTAGGATATCA
TGATGTTTAGTGATGTGGTGGTATACCCAAaacacttttaatttttttag
tacCATTAGGTACTAAAATAGTAAAAGGGTGGTATCCAGACTAaaatttc
agaacttttttaGGAGATTGGCACTAAAATTAGTAATTTTAATAATaatc
tttttatgattttttcagaatttttgcaatttttcgaaaaaatttttgca
aaaatattctcattataagaaaatttcccaagttCAATTATATTTGCATT
CAATCAAATATCTTTAATGTTTGCTCAATTCAGAAGCAGCATTGTTTAAt
agatttttgaggaaaatagATATCATCTTGCATAAAATCAGCACTTGCGA
GGAAAATGGTTCTGAGAAGACAAAATTTGTCTCGAAAATACCAAAACTGG
GTGGTCTTTGtgtctttaaaatatttaatgCAAGGACTGGCAagggtact
aaaataccacttgTCAAAATTAAGGTGGTGGTATACAAGAAATTCTCCAA
AATACTTTAGTATGATTCATATTATGACCGAGATTTTAGTGCTGATCCCT
CCCCCTGAATAAATTAcagtataataataaaaaagagaaaagcttagaac
agtaaaaaaattatttataaaatataacagagataagaaaaaattatctt
tcacaatcaccaaaacaccaaaactcccacctaaagaaattaactctcac
cttaacttgtttctcccacaaggggtgcacactatgtttatggtctttat
tttatttctggtaaattgtaaaattgctgtatttaatttttgagcctcag
cTTGTAGCCAATGTTTCAGATTTTAGTCGCCTGGGTATACAGTATCATAG
TATCACCAGTACATAGTATATGTTTATAAGTTTTATTAAGCATATTAAAA
ACACATACCAggtaaaattgaaataataCTAATATCTGCTGCTACTCTAA
GCATTGTATATACTTTTAGGTAGAGCTCTACTTCTATTTCTATATGGTTG
AGTTGCAGCTGGCATGGATGCTCATTTTAGCAACTATAGACACTTTCAAT
GAGCGCCTAATAGGCTATGTGCTGTTGGGATTCAAAGAATTTTTATCCAC
ATCTGATGATGGCCTTGTGGGTGAAACACTGTGTAATGGTTGtttatgga
cctacctcggTGGGTGGAGGGTCCTTTAAGATTAACCAATGTTTGTTTGT
TAGTCCGTCCATCCATCCATTTgactgttaccagcttttctcgggattgg
ctcattagttttttctaatattttgcAAAGGTGATGTAAAATGGTGATTC
CCAAAAAGTGATGGAGccttgtgtgaaattgcttcattagttttttctga
ttttatgcaTAAAGATTGAGGGCAAGATCCTgtaaaaagtggctgaagca
gtttttttcggaaaatttttattggccataaaaatcagatttttttattt
agggaaattcccttatgtcatttttagggaaaaagagcatttctcgcgat
tggatTGATATTTCTTTCAAGATAATCAACTGGGTGTTCCTAAAAGGTAG
GGTACCCCAATTGGGCACCCATATAATTTACAAACCAGAATTAAATAACC
AAAAATTTGTGGAGGAAAGTCATCTAAGCCATGATTtatgaatctgaaaa
atatttcaattaatATTGCACGATGCAAAAGATATTCAAAGATACATATT
ACCATTATGGTCGAAACACATGGTGTATGAAATAAAGCTTTGTGACGGGG
TTTTGTATATGCATTATATGCATAACAAGCAATAAGCATAATATGTATAA
TATGCATAATATATGGGGTAGCAActtcaaaaataataacataattCAGC
CTATTGAAGTAAATCATTATGTTATTGTGTACATAATAGATTAAAAGAGT
GCAAAGAGGATGAAAGATCAAATGATTAAATTTTAACCTGGCagctttta
aaggttttctatTCCGATATATATAAGATAAACATGGCACCTTTGGGAAA
ATGACTCTTGTGACTAAAGTTTTAAAGCAATCTTAAGTATGATTTTTGTA
AATGATCAATCAAAGGTTTTCAGTATCTTAATCATGAACTCAAGCATCAG
TTTGTAAAATTTAGGGCAGAAAAGGGTACCCCACAAAATAGCCCAATTTG
GACCCCAATTAAGGGTACCCTACCTTTTTAGAAACACCCTGATCAGCTtc
gttttttcaattctttttgaattatattaCATTCGTGAATAAGCACAAAC
AGCCATAACCTAatgtaaattgtttcaaaagttGCTGCACTTTATTTCTA
CTGTAGATTGTTTCTAGACAGATATCTTCTGAATTCAATGCttttacaaa
atttgagctttaAAAAAGATTAGCTTCATTGTCTAGTTTATCATGTACTT
TAATAGATTTTACGAAAAATTAATGTTGACATCATTCtaaagtttgtaaa
atttatttcacCATCAGGAAATTACCTGGGgaaattttaagcctaaaaat
gcttAGCAATGCTAAATCTAAAAGTTCCTATAACATTTGTCATAAAGGAA
AATAATGTTTCTATGATATAATAACTATGATGACGTTTATATTTTCCCTT
TTGCTTTTATTATACAATTAGCAGAGACTAGCTGATCTAATCAAAAAGAA
TATGGTTTAAAAGACCTAGATTTATTTTGTTAATGAAAGAAAGTTTACTA
CATTGATGTTTGATACTGTAAAGAGACATGTCTTCAAAAGGGAAAGCTCC
ACCAAAAGGTTTCCAATATGTGGAAATTGAAATGTGGGAAGCAGTGAAGA
AagataaaaacagcaaaaaaccaGTCAATAAGCACAAGGTTTGTTTAACC
ACTTTCAACtagataaaaatttgttgttattttaatatttcttatgtttt
gaAGTTCTTAACACGAGATTCTCTTGAGTCTTGTAAAAACTATCGGAACC
AGTAAACTCTTGTTAATTCGTTCTCTAATAGTGATCTTTATTTCTGTTCA
GGGAGTATATGCATTCCATATGGATGACTGTATGTGTGGTTTAGCTGGAT
GGCCATGTAGTGAAAGCGGTGTATGGAGCTGTTGCGCACAGTATGAGCAG
TATTGCTTTTGTACAGAGTAGTTGTTTCTCAAGCTCTCTTTACTATCAGA
AACTTTACTTTAGAAATCAAAATGTCGAGAATGTGTATTTAAAGGGAATg
tcataaatctttttttttgtaaactaATTTTTTATTAGATTGGCATATTT
TTATTAATAATTAGTTTATTTTCATGTAATTTTTCTTGCAACTCTCTTTG
TGTATTCTTTTCTACTGTTACATTGATTGATAACCATTTGTGAAAAAAGT
GTGACTCTGGGTCTGTCTACCTTTGGTCAAAACATATTTGGAATTTTGCT
TACACCCTACGTGACCTTTGCTCTAACATCTATTTCTAGTCTCTTAGCTT
AAAATCCGGCATTGACTTtattaatttatatttttgtaaaattgtaTAAT
AGTTTCAGTGTACCGTAGCTTTGTATGATGTGTAAAATaataatcaaaca
aaatttaaacGTGTCCTACAATGCTATAAAGATCCATTGCCAAGTTTTTC
CAGGGCTTTAAGTTAAATAGACTTACTTTTACACGAGGATCTAGTATTGT
ATAGAGTCACTGACCCTTAGTGATTTACTATTCGTCCTGTTCAGaggcaa
tttctcaaaatatttctattcatccgtattttcaaaggaaaatattcttt
tgtatttagagaaaattcagctcctgtatttttgaaggaaatgggttttt
attatgatgtacacgttttcttttcaTAAGAAGCTTAACTCAGCTCAACG
CCTAgatattccttattttttttcagagaaTTTCAACCTCAAAATTCCTG
GTTTTCTGTTTTAGAAAAAGGCATAAAGGACCAAAATGGGAAAAGATTAT
TACAAGATTCTCGGTGTAGACCGCTCATGCACTGAAGCAGAATTGAAAAA
GGCCTATCGAAAATTGGCCTTGAAATATCATCCTGACAAGAATCAAGATG
ATGGAGCTTCAGAGAAATTCAAGGAAATTGGGGAAGCATACGAGGTACCT
CTTTTCACTTTTCACTATTTTGCAACAGTTTTTACCTAGAACTAAaggta
aaaaattttaattattcaCTCTAAATAACGgcgtcatttttttcaaaatt
taaaacaagaTGGTCCTTTGTTTTCAAATCTAATCACGATGCTTTTGCAA
TATTTCAGATTTTGAAAGATCCAGACAAGAGGAAAATTTATGATCAATAC
GGAGAAGAAGGACTGAAGGGTGGAATGGGCGGTCGTGGGGCGGATTTCTC
TGGATATGGTGGATTCAATTTCTCGTCTTTCGATCCtcatgaaactttca
aacagttCTTTGGGGATAATGACCCTTTCAGAGGTTGGTTGGGCATCATT
ATTATTATCAAAACAGTAGcggcaaaaacattttttttcactcaGAAAAT
ATCACATAATATTAGCTTATCAATTTCTTAGCACTCGATTTTTGTCTTTA
CTAGTCGCTGTGACGTGTCTTGGCACTCATAAGGCTTGGCCTCGAGTGAG
CATCGCTCCCCCAGTGTCATTCGAGTGTAATGGTAAAcaccatggcttgg
cagctcgcgtctgtcagTGCTGTGATTCATACTCCTTCAGGAgtaggacc
catcccgaatgATTCAGAGGGCATATATCTATTAGTCGCTAAAATTATGT
AATGTTTTAGGAATGTTTCGCTGCTAATTTTGTAATGTTGTAGGGTTTGT
AGTCAAACTAATATTGCGTCCTACAAAAAGTCTATTATTCAAATTTCATC
TAGCATATTAATCAATATTCGTGATGTTTCTATGTGTATACGACCCTGCC
GAtgcaccggacagtccggtgtgtTTTTCTGGTGCCAAAAAGTATCCCTC
AGCCACACCGGACTATGCTTGTTCCGATGTTCGTAAAGTCCGGTGCTCAG
GCAGGGTCGTATGTGTagaatgaatttgaatttttagtaGAATGAATGAA
AAGGTTTTCGGGTTCGATCTTGGAGCTCTGGATTTAGTAAGAATCCATTG
TTTATCTATCCATTTTGTTTCTCATTCAGAGTTTGAGTCTTTTGGAGGTT
TTGGAGGCCCTGGACGGAGTGGCTTCAGTAACTTCATGGGAGGAGCCAAC
AATTTCTCAAATATGGGAGGCCATCACTCTGGGTTTGGTGGCAGTCCTCA
AAAAGATCCATCGGTCGAACATTTCCTTAATGTAACACTCGAGGAAATTC
TACAGGGTACAACAAAGAAGATGAAAATCACCAGGGAAGTGTTAGTTCCA
GGTACCAACTCAACAAGAACTGAACCTAAAGTGCTAGAAATAACAGTCAA
GAAAGGCTGGAAGGAGGGAACTAAGATCACATTTCCAAACGAAGGGAACC
AGACCACTGGTAATACACCTGCTGACATAGTTTTCATCATCAAGGATAAA
GAACACGCTATCTTCACCAGGGACCGAGATAACAACTTATTATACAGACA
CAAATTAACGCTTAAACAAGCATTACTTGGTTGCACTATATCTGTCCCTT
CCCTAGAAGGCCCTCATTATGATATTGAACTGAAACAAGCTTCACCATCA
AGCAAACGACTTTTGAAAGGATATGGTCTTCCAAAGCCAAAGAAACCTCG
GGAACGGGCTGACTTGATCGTTGAATTCGATATTGAATTTCCAAAGAATT
TATCAGATGACACTAAACAACAGCTGCAACATATTTTACCAGAATGACTG
AAAAGGTGCAACTCAAAGCTTTGACTTTTGAGAAAAAGTACAATTTGCAA
CAAATTACCGTAATTGTTATACAAAGCTCTCCTGGACTTTGTTGTTGAGC
TGGGATAAAACTATTCATCATAAAAGAGTAGtgttcaaaaaaaagtttcg
ctgactatttaaaaataaatttgaacttGTTTTAGATTGTCAGATATTGA
ATGATTATTGACTGATATTAATGATTGATTGATATTTAGGTTTAATGgag
tatgaatttttttaaatttaagagAATTTCCTATTATCCTATTACTACat
atttttagttgaaagtttcGAACATTACGtaatattttgtgattttttgt
tgAATTGTAATACTTTTTCTATTATTGTATTTATTATATAAAATGTAATT
ATTTTTAGGCACAGGAAATTATTAACTGGAttgtatttttgttattttga
tctTGCATTGATTATTCTACGCATGGTTAAAGATCTTCTCCTCGATAGCT
ATAATGGTAGAGAGTGAGTTGAGAGTTGAGATACTCTTATTAACGAAA

Coding sequence (CDS) from alignment at scaffold_152:41868..49515+

>TCONS_00049106 ID=TCONS_00049106|Name=TCONS_00049106|organism=Clytia hemisphaerica|type=CDS|length=3006bp|location=Sequence derived from alignment at scaffold_152:41868..49515+ (Clytia hemisphaerica)
ATGGGAAAAGATTATTACAAGATTCTCGGTGTAGACCGCTCATGCACTGA
AGCAGAATTGAAAAAGGCCTATCGAAAATTGGCCTTGAAATATCATCCTG
ACAAGAATCAAGATGATGGAGCTTCAGAGAAATTCAAGGAAATTGGGGAA
GCATACGAGATTTTGAAAGATCCAGACAAGAGGAAAATTTATGATCAATA
CGGAGAAGAAGGACTGAAGGGTGGAATGGGCGGTCGTGGGGCGGATTTCT
CTGGATATGGTGGATTCAATTTCTCGTCTTTCGATCCtcatgaaactttc
aaacagttCTTTGGGGATAATGACCCTTTCAGAGAGTTTGAGTCTTTTGG
AGGTTTTGGAGGCCCTGGACGGAGTGGCTTCAGTAACTTCATGGGAGGAG
CCAACAATTTCTCAAATATGGGAGGCCATCACTCTGGGTTTGGTGGCAGT
CCTCAAAAAGATCCATCGGTCGAACATTTCCTTAATGTAACACTCGAGGA
AATTCTACAGGGTACAACAAAGAAGATGAAAATCACCAGGGAAGTGTTAG
TTCCAGGTACCAACTCAACAAGAACTGAACCTAAAGTGCTAGAAATAACA
GTCAAGAAAGGCTGGAAGGAGGGAACTAAGATCACATTTCCAAACGAAGG
GAACCAGACCACTGGTAATACACCTGCTGACATAGTTTTCATCATCAAGG
ATAAAGAACACGCTATCTTCACCAGGGACCGAGATAACAACTTATTATAC
AGACACAAATTAACGCTTAAACAAGCATTACTTGGTTGCACTATATCTGT
CCCTTCCCTAGAAGGCCCTCATTATGATATTGAACTGAAACAAGCTTCAC
CATCAAGCAAACGACTTTTGAAAGGATATGGTCTTCCAAAGCCAAAGAAA
CCTCGGGAACGGGCTGACTTGATCGTTGAATTCGATATTGAATTTCCAAA
GAATTTATCAGATGACACTAAACAACAGCTGCAACATATTTTACCAGAAT
GAATGGGAAAAGATTATTACAAGATTCTCGGTGTAGACCGCTCATGCACT
GAAGCAGAATTGAAAAAGGCCTATCGAAAATTGGCCTTGAAATATCATCC
TGACAAGAATCAAGATGATGGAGCTTCAGAGAAATTCAAGGAAATTGGGG
AAGCATACGAGATTTTGAAAGATCCAGACAAGAGGAAAATTTATGATCAA
TACGGAGAAGAAGGACTGAAGGGTGGAATGGGCGGTCGTGGGGCGGATTT
CTCTGGATATGGTGGATTCAATTTCTCGTCTTTCGATCCtcatgaaactt
tcaaacagttCTTTGGGGATAATGACCCTTTCAGAGAGTTTGAGTCTTTT
GGAGGTTTTGGAGGCCCTGGACGGAGTGGCTTCAGTAACTTCATGGGAGG
AGCCAACAATTTCTCAAATATGGGAGGCCATCACTCTGGGTTTGGTGGCA
GTCCTCAAAAAGATCCATCGGTCGAACATTTCCTTAATGTAACACTCGAG
GAAATTCTACAGGGTACAACAAAGAAGATGAAAATCACCAGGGAAGTGTT
AGTTCCAGGTACCAACTCAACAAGAACTGAACCTAAAGTGCTAGAAATAA
CAGTCAAGAAAGGCTGGAAGGAGGGAACTAAGATCACATTTCCAAACGAA
GGGAACCAGACCACTGGTAATACACCTGCTGACATAGTTTTCATCATCAA
GGATAAAGAACACGCTATCTTCACCAGGGACCGAGATAACAACTTATTAT
ACAGACACAAATTAACGCTTAAACAAGCATTACTTGGTTGCACTATATCT
GTCCCTTCCCTAGAAGGCCCTCATTATGATATTGAACTGAAACAAGCTTC
ACCATCAAGCAAACGACTTTTGAAAGGATATGGTCTTCCAAAGCCAAAGA
AACCTCGGGAACGGGCTGACTTGATCGTTGAATTCGATATTGAATTTCCA
AAGAATTTATCAGATGACACTAAACAACAGCTGCAACATATTTTACCAGA
ATGAATGGGAAAAGATTATTACAAGATTCTCGGTGTAGACCGCTCATGCA
CTGAAGCAGAATTGAAAAAGGCCTATCGAAAATTGGCCTTGAAATATCAT
CCTGACAAGAATCAAGATGATGGAGCTTCAGAGAAATTCAAGGAAATTGG
GGAAGCATACGAGATTTTGAAAGATCCAGACAAGAGGAAAATTTATGATC
AATACGGAGAAGAAGGACTGAAGGGTGGAATGGGCGGTCGTGGGGCGGAT
TTCTCTGGATATGGTGGATTCAATTTCTCGTCTTTCGATCCtcatgaaac
tttcaaacagttCTTTGGGGATAATGACCCTTTCAGAGAGTTTGAGTCTT
TTGGAGGTTTTGGAGGCCCTGGACGGAGTGGCTTCAGTAACTTCATGGGA
GGAGCCAACAATTTCTCAAATATGGGAGGCCATCACTCTGGGTTTGGTGG
CAGTCCTCAAAAAGATCCATCGGTCGAACATTTCCTTAATGTAACACTCG
AGGAAATTCTACAGGGTACAACAAAGAAGATGAAAATCACCAGGGAAGTG
TTAGTTCCAGGTACCAACTCAACAAGAACTGAACCTAAAGTGCTAGAAAT
AACAGTCAAGAAAGGCTGGAAGGAGGGAACTAAGATCACATTTCCAAACG
AAGGGAACCAGACCACTGGTAATACACCTGCTGACATAGTTTTCATCATC
AAGGATAAAGAACACGCTATCTTCACCAGGGACCGAGATAACAACTTATT
ATACAGACACAAATTAACGCTTAAACAAGCATTACTTGGTTGCACTATAT
CTGTCCCTTCCCTAGAAGGCCCTCATTATGATATTGAACTGAAACAAGCT
TCACCATCAAGCAAACGACTTTTGAAAGGATATGGTCTTCCAAAGCCAAA
GAAACCTCGGGAACGGGCTGACTTGATCGTTGAATTCGATATTGAATTTC
CAAAGAATTTATCAGATGACACTAAACAACAGCTGCAACATATTTTACCA
GAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031209XLOC_031209Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049106-proteinTCONS_00049106-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049106-exon-scaffold_152-1491911889:41868..46005TCONS_00049106-exon-scaffold_152-1491911889:41868..46005Clytia hemisphaericaexon
TCONS_00049106-exon-scaffold_152-1510915933:41868..46005TCONS_00049106-exon-scaffold_152-1510915933:41868..46005Clytia hemisphaericaexon
TCONS_00049106-exon-scaffold_152-1575043694:41868..46005TCONS_00049106-exon-scaffold_152-1575043694:41868..46005Clytia hemisphaericaexon
TCONS_00049106-exon-scaffold_152-1491911889:46169..46257TCONS_00049106-exon-scaffold_152-1491911889:46169..46257Clytia hemisphaericaexon
TCONS_00049106-exon-scaffold_152-1510915933:46169..46257TCONS_00049106-exon-scaffold_152-1510915933:46169..46257Clytia hemisphaericaexon
TCONS_00049106-exon-scaffold_152-1575043694:46169..46257TCONS_00049106-exon-scaffold_152-1575043694:46169..46257Clytia hemisphaericaexon
TCONS_00049106-exon-scaffold_152-1491911889:47082..47261TCONS_00049106-exon-scaffold_152-1491911889:47082..47261Clytia hemisphaericaexon
TCONS_00049106-exon-scaffold_152-1510915933:47082..47261TCONS_00049106-exon-scaffold_152-1510915933:47082..47261Clytia hemisphaericaexon
TCONS_00049106-exon-scaffold_152-1575043694:47082..47261TCONS_00049106-exon-scaffold_152-1575043694:47082..47261Clytia hemisphaericaexon
TCONS_00049106-exon-scaffold_152-1491911889:47426..47600TCONS_00049106-exon-scaffold_152-1491911889:47426..47600Clytia hemisphaericaexon
TCONS_00049106-exon-scaffold_152-1510915933:47426..47600TCONS_00049106-exon-scaffold_152-1510915933:47426..47600Clytia hemisphaericaexon
TCONS_00049106-exon-scaffold_152-1575043694:47426..47600TCONS_00049106-exon-scaffold_152-1575043694:47426..47600Clytia hemisphaericaexon
TCONS_00049106-exon-scaffold_152-1491911889:48297..49515TCONS_00049106-exon-scaffold_152-1491911889:48297..49515Clytia hemisphaericaexon
TCONS_00049106-exon-scaffold_152-1510915933:48297..49515TCONS_00049106-exon-scaffold_152-1510915933:48297..49515Clytia hemisphaericaexon
TCONS_00049106-exon-scaffold_152-1575043694:48297..49515TCONS_00049106-exon-scaffold_152-1575043694:48297..49515Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_152supercontigscaffold_152:41868..49515 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
42.3836	39.5854	15.7904	12.2051	22.1665	17.3737	17.2797	17.581	13.6205	14.0563	10.8844	9.23015	7.33595	6.73316	5.55466	5.93656	14.8259	14.4778	7.89712	9.99461	11.6302	11.2063	17.7862	16.8405	13.501	12.8527	5.92922	4.96705	9.44126	9.47572
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001623DnaJ_domain
IPR002939DnaJ_C
IPR018253DnaJ_domain_CS
IPR008971HSP40/DnaJ_pept-bd
Vocabulary: Biological Process
TermDefinition
GO:0006457protein folding
Vocabulary: Molecular Function
TermDefinition
GO:0051082unfolded protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006457 protein folding
molecular_function GO:0051082 unfolded protein binding
Blast
[Close]
BLAST of TCONS_00049106 vs. Swiss-Prot (Human)
Match: DNJB1 (DnaJ homolog subfamily B member 1 OS=Homo sapiens GN=DNAJB1 PE=1 SV=4)

HSP 1 Score: 220.705 bits (561), Expect = 1.538e-62
Identity = 159/340 (46.76%), Postives = 217/340 (63.82%), Query Frame = 1 
Query: 4249 MGKDYYKILGVDRSCTXXXXXXXXXXXXXXXHPDKNQDDGASEKFKEIGEAYEILKDPDKRKIYDQYXXXXXXXXXXXXXADXXXXXXXXXXX--XDPHETFKQFFGDNDXXXX--XXXXXXXXXXXXXXXSNFMGGANNFSNMGGHHSGFGGSP---QKDPSVEHFLNVTLEEILQGTTKKMKITREVLVPGTNSTRTEPKVLEITVKKGWKEGTKITFPNEGNQTTGNTPADIVFIIKDKEHAIFTRDRDNNLLYRHKLTLKQALLGCTISVPSLEGPHYDIELKQA-SPSSXXXXXXXXXXXXXXXXERADLIVEFDIEFPKNLSDDTKQQLQHILP 5244
            MGKDYY+ LG+ R  ++ E+K+AYR+ AL+YHPDKN++ GA EKFKEI EAY++L DP KR+I+D+YGEEGLKG     G+     G     +   DPH  F +FFG  +PF     +  G  G      FS F  G   F+N+    S     P   ++DP V H L V+LEEI  G TKKMKI+ + L P   S R E K+L I VKKGWKEGTKITFP EG+QT+ N PADIVF++KDK H IF RD  ++++Y  +++L++AL GCT++VP+L+G    +  K    P  +R + G GLP PK P +R DLI+EF++ FP+ +   ++  L+ +LP
Sbjct:    1 MGKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGLKGSGPSGGSGGGANGTSFSYTFHGDPHAMFAEFFGGRNPFDTFFGQRNGEEGMDIDDPFSGFPMGMGGFTNVNFGRSRSAQEPARKKQDPPVTHDLRVSLEEIYSGCTKKMKISHKRLNPDGKSIRNEDKILTIEVKKGWKEGTKITFPKEGDQTSNNIPADIVFVLKDKPHNIFKRD-GSDVIYPARISLREALCGCTVNVPTLDGRTIPVVFKDVIRPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPERIPQTSRTVLEQVLP 339
The following BLAST results are available for this feature:
BLAST of TCONS_00049106 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DNJB11.538e-6246.76DnaJ homolog subfamily B member 1 OS=Homo sapiens ... [more]
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