TCONS_00049095 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049095
Unique NameTCONS_00049095
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length312

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049095 ID=TCONS_00049095|Name=TCONS_00049095|organism=Clytia hemisphaerica|type=transcript|length=312bp
attgaaactttttctttcaataaCATAAGGTACCTTCCatgttttaacat
tttcttccaGTTTCGAATGATATTCTGTTACAACAGGGTCGACAGCATAA
TACAGTGTAACGTCTAACTGGGTCTCTTTAATCAGTATTTTATCAAGCAT
TCCGTCACCAGGACCGATTGATAGAATCTTCAATGCTTTTTTATCCAAGT
TGTTACTTTCCAAAATGGATTTCAATTTAGTTTGTTTTATGTGACCAGCA
TTTTTCTTCCGATTTTCACAGTTTGCTACCGATGACCAGTGATCCCAATG
ACCATGATCAGC
Run BLAST on NCBI

protein sequence of TCONS_00049095-protein

>TCONS_00049095-protein ID=TCONS_00049095-protein|Name=TCONS_00049095-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
ADHGHWDHWSSVANCENRKKNAGHIKQTKLKSILESNNLDKKALKILSIG
PGDGMLDKILIKETQLDVTLYYAVDPVVTEYHSKLEENVKTWKVPYVIER
KSFN
Run BLAST on NCBI

transcript from alignment at scaffold_151:60271..60582

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049095 ID=TCONS_00049095|Name=TCONS_00049095|organism=Clytia hemisphaerica|type=transcript|length=312bp|location=Sequence derived from alignment at scaffold_151:60271..60582 (Clytia hemisphaerica)
GCTGATCATGGTCATTGGGATCACTGGTCATCGGTAGCAAACTGTGAAAA
TCGGAAGAAAAATGCTGGTCACATAAAACAAACTAAATTGAAATCCATTT
TGGAAAGTAACAACTTGGATAAAAAAGCATTGAAGATTCTATCAATCGGT
CCTGGTGACGGAATGCTTGATAAAATACTGATTAAAGAGACCCAGTTAGA
CGTTACACTGTATTATGCTGTCGACCCTGTTGTAACAGAATATCATTCGA
AACtggaagaaaatgttaaaacatGGAAGGTACCTTATGttattgaaaga
aaaagtttcaat

Coding sequence (CDS) from alignment at scaffold_151:60271..60582

>TCONS_00049095 ID=TCONS_00049095|Name=TCONS_00049095|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at scaffold_151:60271..60582 (Clytia hemisphaerica)
GCTGATCATGGTCATTGGGATCACTGGTCATCGGTAGCAAACTGTGAAAA
TCGGAAGAAAAATGCTGGTCACATAAAACAAACTAAATTGAAATCCATTT
TGGAAAGTAACAACTTGGATAAAAAAGCATTGAAGATTCTATCAATCGGT
CCTGGTGACGGAATGCTTGATAAAATACTGATTAAAGAGACCCAGTTAGA
CGTTACACTGTATTATGCTGTCGACCCTGTTGTAACAGAATATCATTCGA
AACtggaagaaaatgttaaaacatGGAAGGTACCTTATGttattgaaaga
aaaagtttcaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031200XLOC_031200Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049095-exon-scaffold_151-1491911889:60271..60582TCONS_00049095-exon-scaffold_151-1491911889:60271..60582Clytia hemisphaericaexon
TCONS_00049095-exon-scaffold_151-1510915933:60271..60582TCONS_00049095-exon-scaffold_151-1510915933:60271..60582Clytia hemisphaericaexon
TCONS_00049095-exon-scaffold_151-1575043694:60271..60582TCONS_00049095-exon-scaffold_151-1575043694:60271..60582Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049095-proteinTCONS_00049095-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_151supercontigscaffold_151:60271..60582 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.344327	0.335773	0	0.381422	1.85738	1.10079	0.442687	0.414438	0.580316	0.359408	0.34885	1.1466	0.687004	0.47564	0.391041	1.04912	1.03394	2.64939	0	0.766043	1.99749	0.974306	0.394799	1.43572	1.10907	0.329939	0.472141	0	0.764353	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049095 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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