TCONS_00049085 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049085
Unique NameTCONS_00049085
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length273

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049085 ID=TCONS_00049085|Name=TCONS_00049085|organism=Clytia hemisphaerica|type=transcript|length=273bp
AGGGCTGGGGGTAATTtttgacaaaattgcaaaataataaAACTAAGATA
ATCATTGGATAAATAGGGATAGAAAATGTGATATAGTGTTTGTTTCGAGT
TGATCCATACTCACGTAGTCTGCCTGACTTTCAAAATACAGTTTAATCCA
ACCATGAATAGACTTTGAACGTTCAAATTTAATTGGGCAAGCCAtaacaa
aatgttaaaaagcttTCATTTTAAGTGTTCTTTTTGAAGGGCTTTTTTTG
ATGGAAATTTCAAGGATAATCCG
Run BLAST on NCBI

transcript from alignment at scaffold_151:2605..3142-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049085 ID=TCONS_00049085|Name=TCONS_00049085|organism=Clytia hemisphaerica|type=transcript|length=538bp|location=Sequence derived from alignment at scaffold_151:2605..3142- (Clytia hemisphaerica)
AGGGCTGGGGGTAATTGTTGACACACAGTCTCCAAATAGGAGAGGAGTTT
TATCAAATAGAAAATACAAGAAGCAAGGGAAGATGAAATGAAATTTCTGT
AAAATTGTGCTATTCAATAAGAATATCTTTATCATTTAAACGTCAATCAA
CGAGAAATTATTATTTAAAAACGTTATCTGGTTCACTAGCAAAAGGCTCT
TTTTTTGTCAAAAGATCACAGTTATTATAGCAGAGTAATTCAAGAAGTAT
TTCATTGTTTCAGAAATAAAATTTGGTAAAGTTTGACAAAATTGCAAAAT
AATAAAACTAAGATAATCATTGGATAAATAGGGATAGAAAATGTGATATA
GTGTTTGTTTCGAGTTGATCCATACTCACGTAGTCTGCCTGACTTTCAAA
ATACAGTTTAATCCAACCATGAATAGACTTTGAACGTTCAAATTTAATTG
GGCAAGCCATAACAAAATGTTAAAAAGCTTTCATTTTAAGTGTTCTTTTT
GAAGGGCTTTTTTTGATGGAAATTTCAAGGATAATCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031192XLOC_031192Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049085-exon-scaffold_151-1575043694:3127..3142TCONS_00049085-exon-scaffold_151-1575043694:3127..3142Clytia hemisphaericaexon
TCONS_00049085-exon-scaffold_151-1575043694:2605..2861TCONS_00049085-exon-scaffold_151-1575043694:2605..2861Clytia hemisphaericaexon
TCONS_00049085-exon-scaffold_151-1510915933:3127..3142TCONS_00049085-exon-scaffold_151-1510915933:3127..3142Clytia hemisphaericaexon
TCONS_00049085-exon-scaffold_151-1510915933:2605..2861TCONS_00049085-exon-scaffold_151-1510915933:2605..2861Clytia hemisphaericaexon
TCONS_00049085-exon-scaffold_151-1491911889:3127..3142TCONS_00049085-exon-scaffold_151-1491911889:3127..3142Clytia hemisphaericaexon
TCONS_00049085-exon-scaffold_151-1491911889:2605..2861TCONS_00049085-exon-scaffold_151-1491911889:2605..2861Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_151supercontigscaffold_151:2605..3142 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.904478	0	0	0	0	0	0	3.34676	4.36177	6.22454	4.86177	3.30416	2.19043	0	0	0	0	0	0	0	0	0	0	0	1.41557	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049085 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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