TCONS_00049076 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049076
Unique NameTCONS_00049076
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length389

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049076 ID=TCONS_00049076|Name=TCONS_00049076|organism=Clytia hemisphaerica|type=transcript|length=389bp
tggcacgccaaggcacgttggcacgccatggcacgctggcacgcatggca
cgtaggcacgcatagcacgctggcacgcgtggcacgcgatttagcagact
ctttgCTTTAGCTGAAGACTGAAGAAATTGCTTGCTTGACGAAGCTTGAC
GAATGAAGATCTTGATACCGATGATACGAACCAAGTGATAGCAGAGAAAT
ATACAAAACTCATGAGAACTAACTGGCAGAAAAGCGTACTAGAATAGAAG
TTGCAGTTGTTTGTAAATACTCGACGGATATATGAACTGCTCATCTGTTC
CTGAAAACTATGCTTAtgtaagtgaaagaaaaaagttgtaaacactaaaa
gtttgttttttaattaaattgtaACTTAATATTTCTTCA
Run BLAST on NCBI

transcript from alignment at scaffold_150:18112..18500

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049076 ID=TCONS_00049076|Name=TCONS_00049076|organism=Clytia hemisphaerica|type=transcript|length=389bp|location=Sequence derived from alignment at scaffold_150:18112..18500 (Clytia hemisphaerica)
TGAAGAAATATTAAGTtacaatttaattaaaaaacaaacttttagtgttt
acaacttttttctttcacttacaTAAGCATAGTTTTCAGGAACAGATGAG
CAGTTCATATATCCGTCGAGTATTTACAAACAACTGCAACTTCTATTCTA
GTACGCTTTTCTGCCAGTTAGTTCTCATGAGTTTTGTATATTTCTCTGCT
ATCACTTGGTTCGTATCATCGGTATCAAGATCTTCATTCGTCAAGCTTCG
TCAAGCAAGCAATTTCTTCAGTCTTCAGCTAAAGcaaagagtctgctaaa
tcgcgtgccacgcgtgccagcgtgctatgcgtgcctacgtgccatgcgtg
ccagcgtgccatggcgtgccaacgtgccttggcgtgcca
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031184XLOC_031184Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049076-exon-scaffold_150-1491911889:18112..18500TCONS_00049076-exon-scaffold_150-1491911889:18112..18500Clytia hemisphaericaexon
TCONS_00049076-exon-scaffold_150-1510915933:18112..18500TCONS_00049076-exon-scaffold_150-1510915933:18112..18500Clytia hemisphaericaexon
TCONS_00049076-exon-scaffold_150-1575043694:18112..18500TCONS_00049076-exon-scaffold_150-1575043694:18112..18500Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_150supercontigscaffold_150:18112..18500 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.197099	0	0.669495	0	13.7563	13.0861	11.7267	10.257	4.59201	3.47099	1.89425	2.12949	0.938514	1.12181	0.582575	0.45858	1.22258	0.359922	0.527826	1.87395	0.335322	1.24993	0.490139	0.621268	2.25093	3.22421	0.270261	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049076 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top