TCONS_00049075 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049075
Unique NameTCONS_00049075
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length828

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049075 ID=TCONS_00049075|Name=TCONS_00049075|organism=Clytia hemisphaerica|type=transcript|length=828bp
CTCAAGGGTAATCATAAATatgatgtctttttgaaaactcaaattttatc
ttcgacgtattcccatgtgaatcaaaattatttcataaccgacataaact
ttttagccattttttcaaaaacaaatacttgagaaattcttttgattgct
ATAAATTGGAAGTTTACAGCTGGTGGAAAAGGTTGATTATCAAATTTGTG
ATATTCATCGCTCTGACAGGTATTTTAGGGGGTACTCCATTAGGTACTCC
ATTGgagtactccatggagctaatccatgttttacaacgaccctaatttt
tttacagaattAATAACCATCTGTGAAAAAATGTCTTTGAATTTTAATCA
AATGGTGTACATGCTATTAAATGTTAGAATAAtacaatatcaaaagaaaa
gtttctaattttcctatttcaaaatttcaagatttcaagatttcaatcta
ttacaaaattacaatactccgaaaatggttgaaatataGTATGCCTAAAT
AATTGAATGCTACTTCTAGGCCCTTCTAGGTAAGAAAGATAATGACCCTA
TAAGAAGCAAATATTGACTCATCAGACCTTTTGagttcaaaaagaaattt
ttgtcttggctttggaaaaagaaaactttcggATGAGGTGCTTggttaag
aaaataaaaatgtgaaaattacaTTAAAAAATACCGTTTAAACAAATGAT
ACGTTAGTATAGAGAAAGTACAAAGATACTCCTTAAACTTTATAAAAGAA
ATTACGTTTAGTTTAAGTATAACTATactaaaattttataaaatgtttgt
ttacaacTCATCACGTTTCCCTTCTGGN
Run BLAST on NCBI

transcript from alignment at scaffold_150:5521..6348

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049075 ID=TCONS_00049075|Name=TCONS_00049075|organism=Clytia hemisphaerica|type=transcript|length=828bp|location=Sequence derived from alignment at scaffold_150:5521..6348 (Clytia hemisphaerica)
NCCAGAAGGGAAACGTGATGAgttgtaaacaaacattttataaaatttta
gtATAGTTATACTTAAACTAAACGTAATTTCTTTTATAAAGTTTAAGGAG
TATCTTTGTACTTTCTCTATACTAACGTATCATTTGTTTAAACGGTATTT
TTTAAtgtaattttcacatttttattttcttaaccAAGCACCTCATccga
aagttttctttttccaaagccaagacaaaaatttctttttgaactCAAAA
GGTCTGATGAGTCAATATTTGCTTCTTATAGGGTCATTATCTTTCTTACC
TAGAAGGGCCTAGAAGTAGCATTCAATTATTTAGGCATACtatatttcaa
ccattttcggagtattgtaattttgtaatagattgaaatcttgaaatctt
gaaattttgaaataggaaaattagaaacttttcttttgatattgtaTTAT
TCTAACATTTAATAGCATGTACACCATTTGATTAAAATTCAAAGACATTT
TTTCACAGATGGTTATTaattctgtaaaaaaattagggtcgttgtaaaac
atggattagctccatggagtactcCAATGGAGTACCTAATGGAGTACCCC
CTAAAATACCTGTCAGAGCGATGAATATCACAAATTTGATAATCAACCTT
TTCCACCAGCTGTAAACTTCCAATTTATagcaatcaaaagaatttctcaa
gtatttgtttttgaaaaaatggctaaaaagtttatgtcggttatgaaata
attttgattcacatgggaatacgtcgaagataaaatttgagttttcaaaa
agacatcatATTTATGATTACCCTTGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031183XLOC_031183Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049075-exon-scaffold_150-1491911889:5521..6348TCONS_00049075-exon-scaffold_150-1491911889:5521..6348Clytia hemisphaericaexon
TCONS_00049075-exon-scaffold_150-1510915933:5521..6348TCONS_00049075-exon-scaffold_150-1510915933:5521..6348Clytia hemisphaericaexon
TCONS_00049075-exon-scaffold_150-1575043694:5521..6348TCONS_00049075-exon-scaffold_150-1575043694:5521..6348Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_150supercontigscaffold_150:5521..6348 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.323961	1.18208	2.50611	1.58152	3.04001	1.81765	7.72875	7.86377	27.8495	31.3292	12.6309	10.3062	7.65948	8.74058	31.8698	24.4025	6.01838	7.27707	10.2292	5.14263	1.35526	1.01222	1.45363	1.04916	9.73568	12.8224	1.6565	1.61179	2.16654	1.97131
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049075 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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