TCONS_00049074 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049074
Unique NameTCONS_00049074
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length834

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049074 ID=TCONS_00049074|Name=TCONS_00049074|organism=Clytia hemisphaerica|type=transcript|length=834bp
TTTAAGTTTTATAGTGTGTGTAAATTACAGACTGAGAAAGTTTTTTAATT
GTGTTAATAAACTACATAAATAATCAAATTGAATACactattttttttat
tctcaaaatatataatttaaATTAATTGATAAATATAAAGCAAAACACAT
TTAATTTgagataaattaaaaaattattctgAAATTTTGGTCAGTGAAAC
CTGGACATCAATTATTTGGCGGGAAAAAGTagatctcaaaaaaatttttt
ttcgcacgTTGAGGAGGATGAACTGCCCAATCCGATGTCTGACGCCAcca
aaaatgtccaaaatgaTGAATGAGTTATTTCGGGTTATTTCGTAAAAGAA
AGATTTATTGGCAAGCATTGATTTATAAAAGTGATAATGTACAAACCGAT
TCCAGACCCACCAGATTTTGATCAGATCAGCCAAGATTTTGCTACTCAAA
AttggtataattttttttgtttcttattcTTGAGTTTCTCTCTGTCTGCT
GAAGAAGGGTCAAGGGTCATAAAAATTTTTAAGTTCAGCTCTTTACTAAA
GGTCAATTTTCAAGGgtgtaaagaataaaagagGCCCCCCAGAAGCGGTC
TTTGTGATGGCGTGATAGAGACCTTATTTCTTGCATGATTAAACGTGATT
TGCCAATCTGCAAAGGAGGGAAATGTTACGCTGGAGCTGCGGCAACTTAA
CTGGGGAAAGTTGAAGGCAGCAGATCTCAAACCTCAAATCTAAGCCAGAG
TCGCAATTTCCAAACTGgggtgatttggaaattttttttttgattgcgtg
atttATAGAACAGGAGGTCGTGCAGTAGTCCGAC
Run BLAST on NCBI

transcript from alignment at scaffold_150:70722..71555-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049074 ID=TCONS_00049074|Name=TCONS_00049074|organism=Clytia hemisphaerica|type=transcript|length=834bp|location=Sequence derived from alignment at scaffold_150:70722..71555- (Clytia hemisphaerica)
TTTAAGTTTTATAGTGTGTGTAAATTACAGACTGAGAAAGTTTTTTAATT
GTGTTAATAAACTACATAAATAATCAAATTGAATACACTATTTTTTTTAT
TCTCAAAATATATAATTTAAATTAATTGATAAATATAAAGCAAAACACAT
TTAATTTGAGATAAATTAAAAAATTATTCTGAAATTTTGGTCAGTGAAAC
CTGGACATCAATTATTTGGCGGGAAAAAGTAGATCTCAAAAAAATTTTTT
TTCGCACGTTGAGGAGGATGAACTGCCCAATCCGATGTCTGACGCCACCA
AAAATGTCCAAAATGATGAATGAGTTATTTCGGGTTATTTCGTAAAAGAA
AGATTTATTGGCAAGCATTGATTTATAAAAGTGATAATGTACAAACCGAT
TCCAGACCCACCAGATTTTGATCAGATCAGCCAAGATTTTGCTACTCAAA
ATTGGTATAATTTTTTTTGTTTCTTATTCTTGAGTTTCTCTCTGTCTGCT
GAAGAAGGGTCAAGGGTCATAAAAATTTTTAAGTTCAGCTCTTTACTAAA
GGTCAATTTTCAAGGGTGTAAAGAATAAAAGAGGCCCCCCAGAAGCGGTC
TTTGTGATGGCGTGATAGAGACCTTATTTCTTGCATGATTAAACGTGATT
TGCCAATCTGCAAAGGAGGGAAATGTTACGCTGGAGCTGCGGCAACTTAA
CTGGGGAAAGTTGAAGGCAGCAGATCTCAAACCTCAAATCTAAGCCAGAG
TCGCAATTTCCAAACTGGGGTGATTTGGAAATTTTTTTTTTGATTGCGTG
ATTTATAGAACAGGAGGTCGTGCAGTAGTCCGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031182XLOC_031182Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049074-exon-scaffold_150-1575043694:70722..71555TCONS_00049074-exon-scaffold_150-1575043694:70722..71555Clytia hemisphaericaexon
TCONS_00049074-exon-scaffold_150-1510915933:70722..71555TCONS_00049074-exon-scaffold_150-1510915933:70722..71555Clytia hemisphaericaexon
TCONS_00049074-exon-scaffold_150-1491911889:70722..71555TCONS_00049074-exon-scaffold_150-1491911889:70722..71555Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_150supercontigscaffold_150:70722..71555 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.148915	0.271065	0.31608	0.525563	0.441898	0	2.6144	3.51698	2.6998	2.34748	5.03363	2.91857	0.0755044	0	0.0966981	0.113695	0	0	0.530583	0	0	0	0	0	0	0	0.0778352	0.0830679	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049074 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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