TCONS_00049072 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049072
Unique NameTCONS_00049072
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1216

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049072 ID=TCONS_00049072|Name=TCONS_00049072|organism=Clytia hemisphaerica|type=transcript|length=1216bp
ttcttccGAGAATTTAAGTTTTATAGTGTGTGTAAATTACAGACTGAGAA
AGTTTTTTAATTGTGTTAATAAACTACATAAATAATCAAATTGAATACac
tattttttttattctcaaaatatataatttaaATTAATTGATAAATATAA
AGCAAAACACATTTAATTTgagataaattaaaaaattattctgAAATTTT
GGTCAGTGAAACCTGGACATCAATTATTTGGCGGGAAAAAGTagatctca
aaaaaattttttttcgcacgTTGAGGAGGATGAACTGCCCAATCCGATGT
CTGACGCCAccaaaaatgtccaaaatgaTGAATGAGTTATTTCGGGTTAT
TTCGTAAAAGAAAGATTTATTGGCAAGCATTGATTTATAAAAGTGATAAT
GTACAAACCGATTCCAGACCCACCAGATTTTGATCAGATCAGCCAAGATT
TTGCTACTCAAAAttgGCAAAGTCAAGCAGACACAAACCAAGATACTTGC
GCAAAACCTAAATCAAGAGGATTTCTAGCACCTTTTAAAAAGCAAAGACA
GAGTGAGCAATTTCAACGCCTTCAAAACTACTCAACAGATTTCCAGCAAA
GTCAAGATGGTATACCAGGGAGTCAATTTTTCCTAAATTCTAAACAACCT
CAAGAGCAAattatatcaaaacaaaaaccatTATAATACTGCTGCCACAT
TTGAAACACCAACCTCCTACCAAGCACCAATGACAAGCTTTGCCAACAAT
GATGGTGGTTTCAGCGCTCAAAATGCTTGGGATGATTTGCCTCCTGAATC
CTTGAGAACTGGATTTGGAAATACTCAAAATAACAAACGAAGAAAATTAG
ATTTCAATGTCTCAGCTAATCAAAGTTATGGCAATAATACTTTTCTCAAC
AAGACTGTACCTCCTGAGACACCTGCTAACCTTCAACTGCAAGtcggcaa
tgatgatgatggatCTCATAATCTGAAATCAATACATGAAATCCCTGAAA
AATACAGGCCAATTTTTCCATTTGCATACTTCAATGCATTGCAGTCTAAA
GTTTTTGATGAGGTGATGTATTCAGATAATCCAATGGTTATTTGTGCACC
TACTGGTTCAGGCAAAACTGCCATATTTGAGATGAGCATTATACGATTGC
TTCTCAGTACTACAAATTTCACCTACAAAATAGTATACTTGGCACCAATC
AAAGCATTATGTAGTG
Run BLAST on NCBI

protein sequence of TCONS_00049072-protein

>TCONS_00049072-protein ID=TCONS_00049072-protein|Name=TCONS_00049072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MTSFANNDGGFSAQNAWDDLPPESLRTGFGNTQNNKRRKLDFNVSANQSY
GNNTFLNKTVPPETPANLQLQVGNDDDGSHNLKSIHEIPEKYRPIFPFAY
FNALQSKVFDEVMYSDNPMVICAPTGSGKTAIFEMSIIRLLLSTTNFTYK
IVYLAPIKALCS
Run BLAST on NCBI

transcript from alignment at scaffold_150:66600..71567-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049072 ID=TCONS_00049072|Name=TCONS_00049072|organism=Clytia hemisphaerica|type=transcript|length=4968bp|location=Sequence derived from alignment at scaffold_150:66600..71567- (Clytia hemisphaerica)
TTCTTCCGAGAATTTAAGTTTTATAGTGTGTGTAAATTACAGACTGAGAA AGTTTTTTAATTGTGTTAATAAACTACATAAATAATCAAATTGAATACAC TATTTTTTTTATTCTCAAAATATATAATTTAAATTAATTGATAAATATAA AGCAAAACACATTTAATTTGAGATAAATTAAAAAATTATTCTGAAATTTT GGTCAGTGAAACCTGGACATCAATTATTTGGCGGGAAAAAGTAGATCTCA AAAAAATTTTTTTTCGCACGTTGAGGAGGATGAACTGCCCAATCCGATGT CTGACGCCACCAAAAATGTCCAAAATGATGAATGAGTTATTTCGGGTTAT TTCGTAAAAGAAAGATTTATTGGCAAGCATTGATTTATAAAAGTGATAAT GTACAAACCGATTCCAGACCCACCAGATTTTGATCAGATCAGCCAAGATT TTGCTACTCAAAATTGGTATAATTTTTTTTGTTTCTTATTCTTGAGTTTC TCTCTGTCTGCTGAAGAAGGGTCAAGGGTCATAAAAATTTTTAAGTTCAG CTCTTTACTAAAGGTCAATTTTCAAGGGTGTAAAGAATAAAAGAGGCCCC CCAGAAGCGGTCTTTGTGATGGCGTGATAGAGACCTTATTTCTTGCATGA TTAAACGTGATTTGCCAATCTGCAAAGGAGGGAAATGTTACGCTGGAGCT GCGGCAACTTAACTGGGGAAAGTTGAAGGCAGCAGATCTCAAACCTCAAA TCTAAGCCAGAGTCGCAATTTCCAAACTGGGGTGATTTGGAAATTTTTTT TTTGATTGCGTGATTTATAGAACAGGAGGTCGTGCAGTAGTCCGACNCAG GGATGTAAGACTAACTAGCACTTCCATTTACAACTTGATATTTAGCAAAA TTCCGTCTTATATCAATAAACTTGAAGTCATTTTACTTCTTCATATAAGG AAACAGATATAAAAGCTAAGGCCAAGTAACCTTCGTTTAGAACTTGATAT TTAGAACACCCCTGTCTCGCAGCCCCGGTCGAACTTTCTTCCTTAGTGAG GATAAAAATTCCTATTGAAACCCCAATGGGGATAGAAAATGTATTGTTCC AAGGTTAAAAAATCCACTGGGGATGGGTTTGGAGTGCAATTTTTAAACAT GAATTTCGAATGGGTATGAAATCAAAGTCAATTTCACAGTGGNAATTTCG AATGGGTATGAAATCAAAGTCAATTTCACAGTGGGGCTAAAGTTTCAGGG TATTTTCCCACTGGAGACGAAATTTTTGCCAAATTTTCCAGTGGGGCTGG GTTTAAAGTTTTTTGATACAAGACGGAATTTCGCTAAATATCAAGTTGTA AATGAAGGTTCATCAGTCTTACATCCCTGTCTTATGCAATCAAATAGTAA AATGGCTTCAGAATTTATTGATATAAGACGGAATTTCGCTAAATATCAAG TTGTAAACAGTCTTACATCCCTGTCTCTTGCAATCAAATAGTAAAATGGC TTCAGAGTTTATTGATATACGACGGAATTTCGCTAAATATCAAGTTGTAA ACAGTCTTACATCCCTGTCTCTTGCAATCAAATAGTAAAATGGCTTCAGA GTTTATTGATATACGACGGAATTTCGCTAAATATCAAGTTGTAAACGAAG GTCTAACTTCTTTGTCTCATTCTATGAAATAGCGCAAAGCTTGGCTGTAA CTTGAAAATTTATAGTTTTTTTCAATAAAATATTTTTTGATTCTTTGATA AATCAGAAATCTTACAGGAGAAGTCTTGAATCTTAATCCATTGATTTTCT TATAAGAAAAATCTTTTTAAAATTGTTTAACAATTTTTGATAAACAAATC AATTTTTGCAGATATACATTACCCCCTGATTTAAGAAAAAGAGAAAAGAG AAAAAGACGGAACGAAATTCCGTTACTTTGCGCAAAGTATCATAAGCCTG GTGGGATAGGAAGGCTTCAAATCCCACTGCACTAAGGAGATCCAATTCTA GCCCTTCGGGCTTACTTCATTGATCAGTCCCAACTTAGGGCTGTTTTTAA GAGTGAAATGCATGCAGGGATTGGATTTGTTTCAAAATAATCACACAGGT GTGTTTGAAAGTCTTTTGTTTAAGCACTTTTATTAGCGCATGTACCTCAT ATTTATCGATACCCAGTATTTATAATATCGATACATATTTTCAAGGCGAA ATTTTCGACTTTTCAGTCGTCTTGTTATGATTCATTTAGGCAAAGTCAAG CAGACACAAACCAAGATACTTGCGCAAAACCTAAATCAAGAGGATTTCTA GCACCTTTTAAAAAGCAAAGACAGAGTGAGCAATTTCAACGCCTTCAAAA CTACTCAACAGATTTCCAGCAAAGTCAAGATGGTATACCAGGGAGTCAAT TTTTCCTAAATTCTAAACAACCTCAAGAGCAAATTATATCAAAACAAAAA CCATTATAATACTGCTGCCACATTTGAAACACCAACCTCCTACCAAGCAC CAATGACAAGCTTTGCCAACAATGATGGTGGTTTCAGCGCTCAAAATGCT TGGGATGATTTGCCTCCTGAATCCTTGAGAACTGGATTTGGAAATACTCA AAATAACAAACGAAGAAAATTAGATTTCAATGTCTCAGCTAATCAAAGTT ATGGCAATAATAGTAAGTAAGAGATTCAGTCATAGTATTAAATTCCTTTT GGACCCTCTAGTATGGACAAATTATTGTAGTTTNGATGTCTCCAGCTAAT CAAAGTTATGGCAATAATAGTAAGTAAGAGATACACAGTCATAGTATTAA ATTCCTTTTGGACCCTCAAGTATGGACAAATTATTGTAGTTTGTTAGTTT AAATTGCCTTCTTTGGTTTGTACAGCTGTGGGTGTAAAAAGCAGAAAAAG GTTACAATGTAAATCTTACTAGTATTCTGATAGGTAAGAATAGCTTTTAA TTTTCAGCTTTTTTTATTTAGCTTTTCTCAACAAGACTGTACCTCCTGAG ACACCTGCTAACCTTCAACTGCAAGGTAATCCTTTTTTATTAATTATCTT TACCAAATGCGACTTTCAGTCTGAGATAATTCATTTTGTTTTGTGAGAAC TTACTATAACAACTTTTGTCACTTCTATTTGTAAAAAGCATAGAAGAAAT TGCAAGCATGAGCTCTGTGTCTAACTGTATGAATTAGATTGTTTTGGTAG ANGTGTGAATGATATTTAGATGATATCATCTATCCCTCATCCACCTTTGT AGGGGAAAGCATAGAAGAAATTGCAAACATGAGCTCTGTGTCTAACTGTA TGAATTAGATTGTTTTGGTAGAGGTCAATAGACCTACACATCTATAAATT ATTATTATTATAATTATAATAAATATGATAACAACACATTTCCCATAAAA AAGGAAAATGGAATTTGATTAAAAACTCAAGTACCCTAAGACATGAAAAT CACCAAACCACATCTGACTGTCAAATTACTTGTGGGAACTGAAACAGGTC TTGCGCAATCAATCGTCTCATAGGAAATTATTGACCATGTTAAATCACAT TAAAATGAGATGGCGTGAAACAGTGTGTTCATGATATGCACCACTGCAAT GACTTCACAAAATTATGCAATTTTTTTGTTTTTGTACGATACGTCATTTT TTCTATTGTTTAAGTGACGTATTGGGTGGAAAATGTTAAAAGTTCTCAGA AGACTCTCCAGTGGTTCATATCATGAATAGTAATGTTTTTAAATTTTGAA GAAAATAAGTGAAACATTCTTTTTTTAGTCGGCAATGATGATGATGGATC TCATAATCTGAAATCAATACATGAAATCCGTATCTTTTCAACCTTCAATT GAATTTTATATTTCTTAAGAAGTCCCCTTGTTTGATTTTGAATGTGCAAG GTGTTGACAATAGTAAAAAGAAAAATTCAAAATGCAAAAACTAATAATTC TACCTTTTTTAGAGCGCGTAAGGCGCGTCATTTAACAGACTCCCTGGTAA TTTGGTTTGTTGTAACCTTAAAGATTTCTGAAATATCTTGTCCTTTAAGT TATCCCTAGGAGTAAAAGGATTTCTATATTCCTGTATGGTATGGCAATGT AGGGTCCGGCTTAATGGTTGAAATCCTGTATACTCAGATATATCTACTAT TTTATTACATTGTTAAACCATATCTCAAAAGCTTCAGCAGTTTTCATTTT TTCCTTAATTTCTTTATGTTTAAAGCTGAAAAATACAGGCCAATTTTTCC ATTTGCATACTTCAATGCATTGCAGTCTAAAGTTTTTGATGAGGTAATCA AACATTTATTTTAAAGTGCATGGAGATTTCTCAATGTGTTCTCAAACGTC AGAAGTGCTTTCAGAACATTATGTTACATTACTCTATTACCAGAAAAAGT AGAGGCTGCTCTATATGGCTGACTTGGACGTAATTTAAAATATCAGACTA ATTTGAAAATCATTCTTAAAGGTTTTTCTCATTTACCTCATTTTCGTTCC ATTTTCACTAATTTTAAAGATTATGTTTTATCAACAAATTGTTCTTTAAG GTGATGTATTCAGATAATCCAATGGTTATTTGTGCACCTACTGGTTCAGG CAAAACTGCCATATTTGAGATGAGCATTATACGATTGCTTCTCAGTACTA CAAATTTCACCTACAAAATAGTATACTGTAAGTTGGTTTTTCTTGTATTG GTAAGAGTCTTATTAATATAACATATAAGTTTACTTTGTTCGGAGTTGTT GAATTCACTTTTTTTATGTAATAAAACTATATACGATGATAAAAACATTT TTAGGGTTAAAAACCCAAATAATTGAGAATATCTAAAGACATCGTATATA GTTTGTTTTTTTAAATGAATTTTTGATGTTCTTATTAAAAACACAACGGG TATGCTACCTAGACATCTAGTAATTAATCAATATTTTTTAGTGGCACCAA TCAAAGCATTATGTAGTG

Coding sequence (CDS) from alignment at scaffold_150:66600..71567-

>TCONS_00049072 ID=TCONS_00049072|Name=TCONS_00049072|organism=Clytia hemisphaerica|type=CDS|length=2916bp|location=Sequence derived from alignment at scaffold_150:66600..71567- (Clytia hemisphaerica)
TGGCACCAATCAAAGCATTATGTAGTGTGATGTATTCAGATAATCCAATG
GTTATTTGTGCACCTACTGGTTCAGGCAAAACTGCCATATTTGAGATGAG
CATTATACGATTGCTTCTCAGTACTACAAATTTCACCTACAAAATAGTAT
ACTCTGAAAAATACAGGCCAATTTTTCCATTTGCATACTTCAATGCATTG
CAGTCTAAAGTTTTTGATGAGTCGGCAATGATGATGATGGATCTCATAAT
CTGAAATCAATACATGAAATCCCTTTTCTCAACAAGACTGTACCTCCTGA
GACACCTGCTAACCTTCAACTGCAAGATGACAAGCTTTGCCAACAATGAT
GGTGGTTTCAGCGCTCAAAATGCTTGGGATGATTTGCCTCCTGAATCCTT
GAGAACTGGATTTGGAAATACTCAAAATAACAAACGAAGAAAATTAGATT
TCAATGTCTCAGCTAATCAAAGTTATGGCAATAATATGGCACCAATCAAA
GCATTATGTAGTGTGATGTATTCAGATAATCCAATGGTTATTTGTGCACC
TACTGGTTCAGGCAAAACTGCCATATTTGAGATGAGCATTATACGATTGC
TTCTCAGTACTACAAATTTCACCTACAAAATAGTATACTCTGAAAAATAC
AGGCCAATTTTTCCATTTGCATACTTCAATGCATTGCAGTCTAAAGTTTT
TGATGAGTCGGCAATGATGATGATGGATCTCATAATCTGAAATCAATACA
TGAAATCCCTTTTCTCAACAAGACTGTACCTCCTGAGACACCTGCTAACC
TTCAACTGCAAGATGACAAGCTTTGCCAACAATGATGGTGGTTTCAGCGC
TCAAAATGCTTGGGATGATTTGCCTCCTGAATCCTTGAGAACTGGATTTG
GAAATACTCAAAATAACAAACGAAGAAAATTAGATTTCAATGTCTCAGCT
AATCAAAGTTATGGCAATAATATGGCACCAATCAAAGCATTATGTAGTGT
GATGTATTCAGATAATCCAATGGTTATTTGTGCACCTACTGGTTCAGGCA
AAACTGCCATATTTGAGATGAGCATTATACGATTGCTTCTCAGTACTACA
AATTTCACCTACAAAATAGTATACTCTGAAAAATACAGGCCAATTTTTCC
ATTTGCATACTTCAATGCATTGCAGTCTAAAGTTTTTGATGAGTCGGCAA
TGATGATGATGGATCTCATAATCTGAAATCAATACATGAAATCCCTTTTC
TCAACAAGACTGTACCTCCTGAGACACCTGCTAACCTTCAACTGCAAGAT
GACAAGCTTTGCCAACAATGATGGTGGTTTCAGCGCTCAAAATGCTTGGG
ATGATTTGCCTCCTGAATCCTTGAGAACTGGATTTGGAAATACTCAAAAT
AACAAACGAAGAAAATTAGATTTCAATGTCTCAGCTAATCAAAGTTATGG
CAATAATATGGCACCAATCAAAGCATTATGTAGTGTGATGTATTCAGATA
ATCCAATGGTTATTTGTGCACCTACTGGTTCAGGCAAAACTGCCATATTT
GAGATGAGCATTATACGATTGCTTCTCAGTACTACAAATTTCACCTACAA
AATAGTATACTCTGAAAAATACAGGCCAATTTTTCCATTTGCATACTTCA
ATGCATTGCAGTCTAAAGTTTTTGATGAGTCGGCAATGATGATGATGGAT
CTCATAATCTGAAATCAATACATGAAATCCCTTTTCTCAACAAGACTGTA
CCTCCTGAGACACCTGCTAACCTTCAACTGCAAGATGACAAGCTTTGCCA
ACAATGATGGTGGTTTCAGCGCTCAAAATGCTTGGGATGATTTGCCTCCT
GAATCCTTGAGAACTGGATTTGGAAATACTCAAAATAACAAACGAAGAAA
ATTAGATTTCAATGTCTCAGCTAATCAAAGTTATGGCAATAATATGGCAC
CAATCAAAGCATTATGTAGTGTGATGTATTCAGATAATCCAATGGTTATT
TGTGCACCTACTGGTTCAGGCAAAACTGCCATATTTGAGATGAGCATTAT
ACGATTGCTTCTCAGTACTACAAATTTCACCTACAAAATAGTATACTCTG
AAAAATACAGGCCAATTTTTCCATTTGCATACTTCAATGCATTGCAGTCT
AAAGTTTTTGATGAGTCGGCAATGATGATGATGGATCTCATAATCTGAAA
TCAATACATGAAATCCCTTTTCTCAACAAGACTGTACCTCCTGAGACACC
TGCTAACCTTCAACTGCAAGATGACAAGCTTTGCCAACAATGATGGTGGT
TTCAGCGCTCAAAATGCTTGGGATGATTTGCCTCCTGAATCCTTGAGAAC
TGGATTTGGAAATACTCAAAATAACAAACGAAGAAAATTAGATTTCAATG
TCTCAGCTAATCAAAGTTATGGCAATAATATGGCACCAATCAAAGCATTA
TGTAGTGTGATGTATTCAGATAATCCAATGGTTATTTGTGCACCTACTGG
TTCAGGCAAAACTGCCATATTTGAGATGAGCATTATACGATTGCTTCTCA
GTACTACAAATTTCACCTACAAAATAGTATACTCTGAAAAATACAGGCCA
ATTTTTCCATTTGCATACTTCAATGCATTGCAGTCTAAAGTTTTTGATGA
GTCGGCAATGATGATGATGGATCTCATAATCTGAAATCAATACATGAAAT
CCCTTTTCTCAACAAGACTGTACCTCCTGAGACACCTGCTAACCTTCAAC
TGCAAGATGACAAGCTTTGCCAACAATGATGGTGGTTTCAGCGCTCAAAA
TGCTTGGGATGATTTGCCTCCTGAATCCTTGAGAACTGGATTTGGAAATA
CTCAAAATAACAAACGAAGAAAATTAGATTTCAATGTCTCAGCTAATCAA
AGTTATGGCAATAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031182XLOC_031182Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049072-proteinTCONS_00049072-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049072-exon-scaffold_150-1575043694:71102..71567TCONS_00049072-exon-scaffold_150-1575043694:71102..71567Clytia hemisphaericaexon
TCONS_00049072-exon-scaffold_150-1575043694:68906..69328TCONS_00049072-exon-scaffold_150-1575043694:68906..69328Clytia hemisphaericaexon
TCONS_00049072-exon-scaffold_150-1575043694:68543..68596TCONS_00049072-exon-scaffold_150-1575043694:68543..68596Clytia hemisphaericaexon
TCONS_00049072-exon-scaffold_150-1575043694:67739..67789TCONS_00049072-exon-scaffold_150-1575043694:67739..67789Clytia hemisphaericaexon
TCONS_00049072-exon-scaffold_150-1575043694:67275..67342TCONS_00049072-exon-scaffold_150-1575043694:67275..67342Clytia hemisphaericaexon
TCONS_00049072-exon-scaffold_150-1575043694:66891..67017TCONS_00049072-exon-scaffold_150-1575043694:66891..67017Clytia hemisphaericaexon
TCONS_00049072-exon-scaffold_150-1575043694:66600..66626TCONS_00049072-exon-scaffold_150-1575043694:66600..66626Clytia hemisphaericaexon
TCONS_00049072-exon-scaffold_150-1510915933:71102..71567TCONS_00049072-exon-scaffold_150-1510915933:71102..71567Clytia hemisphaericaexon
TCONS_00049072-exon-scaffold_150-1510915933:68906..69328TCONS_00049072-exon-scaffold_150-1510915933:68906..69328Clytia hemisphaericaexon
TCONS_00049072-exon-scaffold_150-1510915933:68543..68596TCONS_00049072-exon-scaffold_150-1510915933:68543..68596Clytia hemisphaericaexon
TCONS_00049072-exon-scaffold_150-1510915933:67739..67789TCONS_00049072-exon-scaffold_150-1510915933:67739..67789Clytia hemisphaericaexon
TCONS_00049072-exon-scaffold_150-1510915933:67275..67342TCONS_00049072-exon-scaffold_150-1510915933:67275..67342Clytia hemisphaericaexon
TCONS_00049072-exon-scaffold_150-1510915933:66891..67017TCONS_00049072-exon-scaffold_150-1510915933:66891..67017Clytia hemisphaericaexon
TCONS_00049072-exon-scaffold_150-1510915933:66600..66626TCONS_00049072-exon-scaffold_150-1510915933:66600..66626Clytia hemisphaericaexon
TCONS_00049072-exon-scaffold_150-1491911889:71102..71567TCONS_00049072-exon-scaffold_150-1491911889:71102..71567Clytia hemisphaericaexon
TCONS_00049072-exon-scaffold_150-1491911889:68906..69328TCONS_00049072-exon-scaffold_150-1491911889:68906..69328Clytia hemisphaericaexon
TCONS_00049072-exon-scaffold_150-1491911889:68543..68596TCONS_00049072-exon-scaffold_150-1491911889:68543..68596Clytia hemisphaericaexon
TCONS_00049072-exon-scaffold_150-1491911889:67739..67789TCONS_00049072-exon-scaffold_150-1491911889:67739..67789Clytia hemisphaericaexon
TCONS_00049072-exon-scaffold_150-1491911889:67275..67342TCONS_00049072-exon-scaffold_150-1491911889:67275..67342Clytia hemisphaericaexon
TCONS_00049072-exon-scaffold_150-1491911889:66891..67017TCONS_00049072-exon-scaffold_150-1491911889:66891..67017Clytia hemisphaericaexon
TCONS_00049072-exon-scaffold_150-1491911889:66600..66626TCONS_00049072-exon-scaffold_150-1491911889:66600..66626Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_150supercontigscaffold_150:66600..71567 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0 0 0 0.645459 0 0.404047 0 0.59418 0.830298 0 0.484529 0 0 0 0 0 0 0 0 0 0.190128 0 0.280169 1.15427 1.15893 0 0 0.149157 0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005524 ATP binding
molecular_function GO:0003676 nucleic acid binding
Blast
BLAST of TCONS_00049072 vs. Swiss-Prot (Human)
Match: HFM1 (Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 5.155e-24
Identity = 63/147 (42.86%), Postives = 82/147 (55.78%), Query Frame = 1
Query:  817 GNTQNNKRRKLDFNVSANQSYGNNTFLNKTVPPET-----------PANLQLQVGNDDDGSHNLKSIHEIPEKYRPIFP-FAYFNALQSKVFDEVMYSDNPMVICAPTGSGKTAIFEMSIIRLLLSTTN--FTYKIVYLAPIKALCS 1215
            G ++N    K  F  SAN    NN F    +               P ++Q    N   G  +LK++ EIP K+R IF  F YFN +QSK FD+++Y+D   VICAPTGSGKT +FE++I RLL+         KIVY+APIKALCS
Sbjct:  201 GKSRNYSNSKQKFQYSANVFTANNAFSASEIGEGMFKAPSFSVAFQPHDIQEVTEN---GLGSLKAVTEIPAKFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNIKIVYMAPIKALCS 344          
The following BLAST results are available for this feature:
BLAST of TCONS_00049072 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
HFM15.155e-2442.86Probable ATP-dependent DNA helicase HFM1 OS=Homo s... [more]
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