|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049072 ID=TCONS_00049072|Name=TCONS_00049072|organism=Clytia hemisphaerica|type=transcript|length=1216bp ttcttccGAGAATTTAAGTTTTATAGTGTGTGTAAATTACAGACTGAGAA AGTTTTTTAATTGTGTTAATAAACTACATAAATAATCAAATTGAATACac tattttttttattctcaaaatatataatttaaATTAATTGATAAATATAA AGCAAAACACATTTAATTTgagataaattaaaaaattattctgAAATTTT GGTCAGTGAAACCTGGACATCAATTATTTGGCGGGAAAAAGTagatctca aaaaaattttttttcgcacgTTGAGGAGGATGAACTGCCCAATCCGATGT CTGACGCCAccaaaaatgtccaaaatgaTGAATGAGTTATTTCGGGTTAT TTCGTAAAAGAAAGATTTATTGGCAAGCATTGATTTATAAAAGTGATAAT GTACAAACCGATTCCAGACCCACCAGATTTTGATCAGATCAGCCAAGATT TTGCTACTCAAAAttgGCAAAGTCAAGCAGACACAAACCAAGATACTTGC GCAAAACCTAAATCAAGAGGATTTCTAGCACCTTTTAAAAAGCAAAGACA GAGTGAGCAATTTCAACGCCTTCAAAACTACTCAACAGATTTCCAGCAAA GTCAAGATGGTATACCAGGGAGTCAATTTTTCCTAAATTCTAAACAACCT CAAGAGCAAattatatcaaaacaaaaaccatTATAATACTGCTGCCACAT TTGAAACACCAACCTCCTACCAAGCACCAATGACAAGCTTTGCCAACAAT GATGGTGGTTTCAGCGCTCAAAATGCTTGGGATGATTTGCCTCCTGAATC CTTGAGAACTGGATTTGGAAATACTCAAAATAACAAACGAAGAAAATTAG ATTTCAATGTCTCAGCTAATCAAAGTTATGGCAATAATACTTTTCTCAAC AAGACTGTACCTCCTGAGACACCTGCTAACCTTCAACTGCAAGtcggcaa tgatgatgatggatCTCATAATCTGAAATCAATACATGAAATCCCTGAAA AATACAGGCCAATTTTTCCATTTGCATACTTCAATGCATTGCAGTCTAAA GTTTTTGATGAGGTGATGTATTCAGATAATCCAATGGTTATTTGTGCACC TACTGGTTCAGGCAAAACTGCCATATTTGAGATGAGCATTATACGATTGC TTCTCAGTACTACAAATTTCACCTACAAAATAGTATACTTGGCACCAATC AAAGCATTATGTAGTG Run BLAST on NCBI protein sequence of TCONS_00049072-protein >TCONS_00049072-protein ID=TCONS_00049072-protein|Name=TCONS_00049072-protein|organism=Clytia hemisphaerica|type=polypeptide|length=162bp
MTSFANNDGGFSAQNAWDDLPPESLRTGFGNTQNNKRRKLDFNVSANQSY GNNTFLNKTVPPETPANLQLQVGNDDDGSHNLKSIHEIPEKYRPIFPFAY FNALQSKVFDEVMYSDNPMVICAPTGSGKTAIFEMSIIRLLLSTTNFTYK IVYLAPIKALCS Run BLAST on NCBI transcript from alignment at scaffold_150:66600..71567- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049072 ID=TCONS_00049072|Name=TCONS_00049072|organism=Clytia hemisphaerica|type=transcript|length=4968bp|location=Sequence derived from alignment at scaffold_150:66600..71567- (Clytia hemisphaerica) TTCTTCCGAGAATTTAAGTTTTATAGTGTGTGTAAATTACAGACTGAGAA
AGTTTTTTAATTGTGTTAATAAACTACATAAATAATCAAATTGAATACAC
TATTTTTTTTATTCTCAAAATATATAATTTAAATTAATTGATAAATATAA
AGCAAAACACATTTAATTTGAGATAAATTAAAAAATTATTCTGAAATTTT
GGTCAGTGAAACCTGGACATCAATTATTTGGCGGGAAAAAGTAGATCTCA
AAAAAATTTTTTTTCGCACGTTGAGGAGGATGAACTGCCCAATCCGATGT
CTGACGCCACCAAAAATGTCCAAAATGATGAATGAGTTATTTCGGGTTAT
TTCGTAAAAGAAAGATTTATTGGCAAGCATTGATTTATAAAAGTGATAAT
GTACAAACCGATTCCAGACCCACCAGATTTTGATCAGATCAGCCAAGATT
TTGCTACTCAAAATTGGTATAATTTTTTTTGTTTCTTATTCTTGAGTTTC
TCTCTGTCTGCTGAAGAAGGGTCAAGGGTCATAAAAATTTTTAAGTTCAG
CTCTTTACTAAAGGTCAATTTTCAAGGGTGTAAAGAATAAAAGAGGCCCC
CCAGAAGCGGTCTTTGTGATGGCGTGATAGAGACCTTATTTCTTGCATGA
TTAAACGTGATTTGCCAATCTGCAAAGGAGGGAAATGTTACGCTGGAGCT
GCGGCAACTTAACTGGGGAAAGTTGAAGGCAGCAGATCTCAAACCTCAAA
TCTAAGCCAGAGTCGCAATTTCCAAACTGGGGTGATTTGGAAATTTTTTT
TTTGATTGCGTGATTTATAGAACAGGAGGTCGTGCAGTAGTCCGACNCAG
GGATGTAAGACTAACTAGCACTTCCATTTACAACTTGATATTTAGCAAAA
TTCCGTCTTATATCAATAAACTTGAAGTCATTTTACTTCTTCATATAAGG
AAACAGATATAAAAGCTAAGGCCAAGTAACCTTCGTTTAGAACTTGATAT
TTAGAACACCCCTGTCTCGCAGCCCCGGTCGAACTTTCTTCCTTAGTGAG
GATAAAAATTCCTATTGAAACCCCAATGGGGATAGAAAATGTATTGTTCC
AAGGTTAAAAAATCCACTGGGGATGGGTTTGGAGTGCAATTTTTAAACAT
GAATTTCGAATGGGTATGAAATCAAAGTCAATTTCACAGTGGNAATTTCG
AATGGGTATGAAATCAAAGTCAATTTCACAGTGGGGCTAAAGTTTCAGGG
TATTTTCCCACTGGAGACGAAATTTTTGCCAAATTTTCCAGTGGGGCTGG
GTTTAAAGTTTTTTGATACAAGACGGAATTTCGCTAAATATCAAGTTGTA
AATGAAGGTTCATCAGTCTTACATCCCTGTCTTATGCAATCAAATAGTAA
AATGGCTTCAGAATTTATTGATATAAGACGGAATTTCGCTAAATATCAAG
TTGTAAACAGTCTTACATCCCTGTCTCTTGCAATCAAATAGTAAAATGGC
TTCAGAGTTTATTGATATACGACGGAATTTCGCTAAATATCAAGTTGTAA
ACAGTCTTACATCCCTGTCTCTTGCAATCAAATAGTAAAATGGCTTCAGA
GTTTATTGATATACGACGGAATTTCGCTAAATATCAAGTTGTAAACGAAG
GTCTAACTTCTTTGTCTCATTCTATGAAATAGCGCAAAGCTTGGCTGTAA
CTTGAAAATTTATAGTTTTTTTCAATAAAATATTTTTTGATTCTTTGATA
AATCAGAAATCTTACAGGAGAAGTCTTGAATCTTAATCCATTGATTTTCT
TATAAGAAAAATCTTTTTAAAATTGTTTAACAATTTTTGATAAACAAATC
AATTTTTGCAGATATACATTACCCCCTGATTTAAGAAAAAGAGAAAAGAG
AAAAAGACGGAACGAAATTCCGTTACTTTGCGCAAAGTATCATAAGCCTG
GTGGGATAGGAAGGCTTCAAATCCCACTGCACTAAGGAGATCCAATTCTA
GCCCTTCGGGCTTACTTCATTGATCAGTCCCAACTTAGGGCTGTTTTTAA
GAGTGAAATGCATGCAGGGATTGGATTTGTTTCAAAATAATCACACAGGT
GTGTTTGAAAGTCTTTTGTTTAAGCACTTTTATTAGCGCATGTACCTCAT
ATTTATCGATACCCAGTATTTATAATATCGATACATATTTTCAAGGCGAA
ATTTTCGACTTTTCAGTCGTCTTGTTATGATTCATTTAGGCAAAGTCAAG
CAGACACAAACCAAGATACTTGCGCAAAACCTAAATCAAGAGGATTTCTA
GCACCTTTTAAAAAGCAAAGACAGAGTGAGCAATTTCAACGCCTTCAAAA
CTACTCAACAGATTTCCAGCAAAGTCAAGATGGTATACCAGGGAGTCAAT
TTTTCCTAAATTCTAAACAACCTCAAGAGCAAATTATATCAAAACAAAAA
CCATTATAATACTGCTGCCACATTTGAAACACCAACCTCCTACCAAGCAC
CAATGACAAGCTTTGCCAACAATGATGGTGGTTTCAGCGCTCAAAATGCT
TGGGATGATTTGCCTCCTGAATCCTTGAGAACTGGATTTGGAAATACTCA
AAATAACAAACGAAGAAAATTAGATTTCAATGTCTCAGCTAATCAAAGTT
ATGGCAATAATAGTAAGTAAGAGATTCAGTCATAGTATTAAATTCCTTTT
GGACCCTCTAGTATGGACAAATTATTGTAGTTTNGATGTCTCCAGCTAAT
CAAAGTTATGGCAATAATAGTAAGTAAGAGATACACAGTCATAGTATTAA
ATTCCTTTTGGACCCTCAAGTATGGACAAATTATTGTAGTTTGTTAGTTT
AAATTGCCTTCTTTGGTTTGTACAGCTGTGGGTGTAAAAAGCAGAAAAAG
GTTACAATGTAAATCTTACTAGTATTCTGATAGGTAAGAATAGCTTTTAA
TTTTCAGCTTTTTTTATTTAGCTTTTCTCAACAAGACTGTACCTCCTGAG
ACACCTGCTAACCTTCAACTGCAAGGTAATCCTTTTTTATTAATTATCTT
TACCAAATGCGACTTTCAGTCTGAGATAATTCATTTTGTTTTGTGAGAAC
TTACTATAACAACTTTTGTCACTTCTATTTGTAAAAAGCATAGAAGAAAT
TGCAAGCATGAGCTCTGTGTCTAACTGTATGAATTAGATTGTTTTGGTAG
ANGTGTGAATGATATTTAGATGATATCATCTATCCCTCATCCACCTTTGT
AGGGGAAAGCATAGAAGAAATTGCAAACATGAGCTCTGTGTCTAACTGTA
TGAATTAGATTGTTTTGGTAGAGGTCAATAGACCTACACATCTATAAATT
ATTATTATTATAATTATAATAAATATGATAACAACACATTTCCCATAAAA
AAGGAAAATGGAATTTGATTAAAAACTCAAGTACCCTAAGACATGAAAAT
CACCAAACCACATCTGACTGTCAAATTACTTGTGGGAACTGAAACAGGTC
TTGCGCAATCAATCGTCTCATAGGAAATTATTGACCATGTTAAATCACAT
TAAAATGAGATGGCGTGAAACAGTGTGTTCATGATATGCACCACTGCAAT
GACTTCACAAAATTATGCAATTTTTTTGTTTTTGTACGATACGTCATTTT
TTCTATTGTTTAAGTGACGTATTGGGTGGAAAATGTTAAAAGTTCTCAGA
AGACTCTCCAGTGGTTCATATCATGAATAGTAATGTTTTTAAATTTTGAA
GAAAATAAGTGAAACATTCTTTTTTTAGTCGGCAATGATGATGATGGATC
TCATAATCTGAAATCAATACATGAAATCCGTATCTTTTCAACCTTCAATT
GAATTTTATATTTCTTAAGAAGTCCCCTTGTTTGATTTTGAATGTGCAAG
GTGTTGACAATAGTAAAAAGAAAAATTCAAAATGCAAAAACTAATAATTC
TACCTTTTTTAGAGCGCGTAAGGCGCGTCATTTAACAGACTCCCTGGTAA
TTTGGTTTGTTGTAACCTTAAAGATTTCTGAAATATCTTGTCCTTTAAGT
TATCCCTAGGAGTAAAAGGATTTCTATATTCCTGTATGGTATGGCAATGT
AGGGTCCGGCTTAATGGTTGAAATCCTGTATACTCAGATATATCTACTAT
TTTATTACATTGTTAAACCATATCTCAAAAGCTTCAGCAGTTTTCATTTT
TTCCTTAATTTCTTTATGTTTAAAGCTGAAAAATACAGGCCAATTTTTCC
ATTTGCATACTTCAATGCATTGCAGTCTAAAGTTTTTGATGAGGTAATCA
AACATTTATTTTAAAGTGCATGGAGATTTCTCAATGTGTTCTCAAACGTC
AGAAGTGCTTTCAGAACATTATGTTACATTACTCTATTACCAGAAAAAGT
AGAGGCTGCTCTATATGGCTGACTTGGACGTAATTTAAAATATCAGACTA
ATTTGAAAATCATTCTTAAAGGTTTTTCTCATTTACCTCATTTTCGTTCC
ATTTTCACTAATTTTAAAGATTATGTTTTATCAACAAATTGTTCTTTAAG
GTGATGTATTCAGATAATCCAATGGTTATTTGTGCACCTACTGGTTCAGG
CAAAACTGCCATATTTGAGATGAGCATTATACGATTGCTTCTCAGTACTA
CAAATTTCACCTACAAAATAGTATACTGTAAGTTGGTTTTTCTTGTATTG
GTAAGAGTCTTATTAATATAACATATAAGTTTACTTTGTTCGGAGTTGTT
GAATTCACTTTTTTTATGTAATAAAACTATATACGATGATAAAAACATTT
TTAGGGTTAAAAACCCAAATAATTGAGAATATCTAAAGACATCGTATATA
GTTTGTTTTTTTAAATGAATTTTTGATGTTCTTATTAAAAACACAACGGG
TATGCTACCTAGACATCTAGTAATTAATCAATATTTTTTAGTGGCACCAA
TCAAAGCATTATGTAGTG Coding sequence (CDS) from alignment at scaffold_150:66600..71567- >TCONS_00049072 ID=TCONS_00049072|Name=TCONS_00049072|organism=Clytia hemisphaerica|type=CDS|length=2916bp|location=Sequence derived from alignment at scaffold_150:66600..71567- (Clytia hemisphaerica) TGGCACCAATCAAAGCATTATGTAGTGTGATGTATTCAGATAATCCAATG GTTATTTGTGCACCTACTGGTTCAGGCAAAACTGCCATATTTGAGATGAG CATTATACGATTGCTTCTCAGTACTACAAATTTCACCTACAAAATAGTAT ACTCTGAAAAATACAGGCCAATTTTTCCATTTGCATACTTCAATGCATTG CAGTCTAAAGTTTTTGATGAGTCGGCAATGATGATGATGGATCTCATAAT CTGAAATCAATACATGAAATCCCTTTTCTCAACAAGACTGTACCTCCTGA GACACCTGCTAACCTTCAACTGCAAGATGACAAGCTTTGCCAACAATGAT GGTGGTTTCAGCGCTCAAAATGCTTGGGATGATTTGCCTCCTGAATCCTT GAGAACTGGATTTGGAAATACTCAAAATAACAAACGAAGAAAATTAGATT TCAATGTCTCAGCTAATCAAAGTTATGGCAATAATATGGCACCAATCAAA GCATTATGTAGTGTGATGTATTCAGATAATCCAATGGTTATTTGTGCACC TACTGGTTCAGGCAAAACTGCCATATTTGAGATGAGCATTATACGATTGC TTCTCAGTACTACAAATTTCACCTACAAAATAGTATACTCTGAAAAATAC AGGCCAATTTTTCCATTTGCATACTTCAATGCATTGCAGTCTAAAGTTTT TGATGAGTCGGCAATGATGATGATGGATCTCATAATCTGAAATCAATACA TGAAATCCCTTTTCTCAACAAGACTGTACCTCCTGAGACACCTGCTAACC TTCAACTGCAAGATGACAAGCTTTGCCAACAATGATGGTGGTTTCAGCGC TCAAAATGCTTGGGATGATTTGCCTCCTGAATCCTTGAGAACTGGATTTG GAAATACTCAAAATAACAAACGAAGAAAATTAGATTTCAATGTCTCAGCT AATCAAAGTTATGGCAATAATATGGCACCAATCAAAGCATTATGTAGTGT GATGTATTCAGATAATCCAATGGTTATTTGTGCACCTACTGGTTCAGGCA AAACTGCCATATTTGAGATGAGCATTATACGATTGCTTCTCAGTACTACA AATTTCACCTACAAAATAGTATACTCTGAAAAATACAGGCCAATTTTTCC ATTTGCATACTTCAATGCATTGCAGTCTAAAGTTTTTGATGAGTCGGCAA TGATGATGATGGATCTCATAATCTGAAATCAATACATGAAATCCCTTTTC TCAACAAGACTGTACCTCCTGAGACACCTGCTAACCTTCAACTGCAAGAT GACAAGCTTTGCCAACAATGATGGTGGTTTCAGCGCTCAAAATGCTTGGG ATGATTTGCCTCCTGAATCCTTGAGAACTGGATTTGGAAATACTCAAAAT AACAAACGAAGAAAATTAGATTTCAATGTCTCAGCTAATCAAAGTTATGG CAATAATATGGCACCAATCAAAGCATTATGTAGTGTGATGTATTCAGATA ATCCAATGGTTATTTGTGCACCTACTGGTTCAGGCAAAACTGCCATATTT GAGATGAGCATTATACGATTGCTTCTCAGTACTACAAATTTCACCTACAA AATAGTATACTCTGAAAAATACAGGCCAATTTTTCCATTTGCATACTTCA ATGCATTGCAGTCTAAAGTTTTTGATGAGTCGGCAATGATGATGATGGAT CTCATAATCTGAAATCAATACATGAAATCCCTTTTCTCAACAAGACTGTA CCTCCTGAGACACCTGCTAACCTTCAACTGCAAGATGACAAGCTTTGCCA ACAATGATGGTGGTTTCAGCGCTCAAAATGCTTGGGATGATTTGCCTCCT GAATCCTTGAGAACTGGATTTGGAAATACTCAAAATAACAAACGAAGAAA ATTAGATTTCAATGTCTCAGCTAATCAAAGTTATGGCAATAATATGGCAC CAATCAAAGCATTATGTAGTGTGATGTATTCAGATAATCCAATGGTTATT TGTGCACCTACTGGTTCAGGCAAAACTGCCATATTTGAGATGAGCATTAT ACGATTGCTTCTCAGTACTACAAATTTCACCTACAAAATAGTATACTCTG AAAAATACAGGCCAATTTTTCCATTTGCATACTTCAATGCATTGCAGTCT AAAGTTTTTGATGAGTCGGCAATGATGATGATGGATCTCATAATCTGAAA TCAATACATGAAATCCCTTTTCTCAACAAGACTGTACCTCCTGAGACACC TGCTAACCTTCAACTGCAAGATGACAAGCTTTGCCAACAATGATGGTGGT TTCAGCGCTCAAAATGCTTGGGATGATTTGCCTCCTGAATCCTTGAGAAC TGGATTTGGAAATACTCAAAATAACAAACGAAGAAAATTAGATTTCAATG TCTCAGCTAATCAAAGTTATGGCAATAATATGGCACCAATCAAAGCATTA TGTAGTGTGATGTATTCAGATAATCCAATGGTTATTTGTGCACCTACTGG TTCAGGCAAAACTGCCATATTTGAGATGAGCATTATACGATTGCTTCTCA GTACTACAAATTTCACCTACAAAATAGTATACTCTGAAAAATACAGGCCA ATTTTTCCATTTGCATACTTCAATGCATTGCAGTCTAAAGTTTTTGATGA GTCGGCAATGATGATGATGGATCTCATAATCTGAAATCAATACATGAAAT CCCTTTTCTCAACAAGACTGTACCTCCTGAGACACCTGCTAACCTTCAAC TGCAAGATGACAAGCTTTGCCAACAATGATGGTGGTTTCAGCGCTCAAAA TGCTTGGGATGATTTGCCTCCTGAATCCTTGAGAACTGGATTTGGAAATA CTCAAAATAACAAACGAAGAAAATTAGATTTCAATGTCTCAGCTAATCAA AGTTATGGCAATAATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00049072-exon-scaffold_150-1575043694:71102..71567 | TCONS_00049072-exon-scaffold_150-1575043694:71102..71567 | Clytia hemisphaerica | exon |
TCONS_00049072-exon-scaffold_150-1575043694:68906..69328 | TCONS_00049072-exon-scaffold_150-1575043694:68906..69328 | Clytia hemisphaerica | exon |
TCONS_00049072-exon-scaffold_150-1575043694:68543..68596 | TCONS_00049072-exon-scaffold_150-1575043694:68543..68596 | Clytia hemisphaerica | exon |
TCONS_00049072-exon-scaffold_150-1575043694:67739..67789 | TCONS_00049072-exon-scaffold_150-1575043694:67739..67789 | Clytia hemisphaerica | exon |
TCONS_00049072-exon-scaffold_150-1575043694:67275..67342 | TCONS_00049072-exon-scaffold_150-1575043694:67275..67342 | Clytia hemisphaerica | exon |
TCONS_00049072-exon-scaffold_150-1575043694:66891..67017 | TCONS_00049072-exon-scaffold_150-1575043694:66891..67017 | Clytia hemisphaerica | exon |
TCONS_00049072-exon-scaffold_150-1575043694:66600..66626 | TCONS_00049072-exon-scaffold_150-1575043694:66600..66626 | Clytia hemisphaerica | exon |
TCONS_00049072-exon-scaffold_150-1510915933:71102..71567 | TCONS_00049072-exon-scaffold_150-1510915933:71102..71567 | Clytia hemisphaerica | exon |
TCONS_00049072-exon-scaffold_150-1510915933:68906..69328 | TCONS_00049072-exon-scaffold_150-1510915933:68906..69328 | Clytia hemisphaerica | exon |
TCONS_00049072-exon-scaffold_150-1510915933:68543..68596 | TCONS_00049072-exon-scaffold_150-1510915933:68543..68596 | Clytia hemisphaerica | exon |
TCONS_00049072-exon-scaffold_150-1510915933:67739..67789 | TCONS_00049072-exon-scaffold_150-1510915933:67739..67789 | Clytia hemisphaerica | exon |
TCONS_00049072-exon-scaffold_150-1510915933:67275..67342 | TCONS_00049072-exon-scaffold_150-1510915933:67275..67342 | Clytia hemisphaerica | exon |
TCONS_00049072-exon-scaffold_150-1510915933:66891..67017 | TCONS_00049072-exon-scaffold_150-1510915933:66891..67017 | Clytia hemisphaerica | exon |
TCONS_00049072-exon-scaffold_150-1510915933:66600..66626 | TCONS_00049072-exon-scaffold_150-1510915933:66600..66626 | Clytia hemisphaerica | exon |
TCONS_00049072-exon-scaffold_150-1491911889:71102..71567 | TCONS_00049072-exon-scaffold_150-1491911889:71102..71567 | Clytia hemisphaerica | exon |
TCONS_00049072-exon-scaffold_150-1491911889:68906..69328 | TCONS_00049072-exon-scaffold_150-1491911889:68906..69328 | Clytia hemisphaerica | exon |
TCONS_00049072-exon-scaffold_150-1491911889:68543..68596 | TCONS_00049072-exon-scaffold_150-1491911889:68543..68596 | Clytia hemisphaerica | exon |
TCONS_00049072-exon-scaffold_150-1491911889:67739..67789 | TCONS_00049072-exon-scaffold_150-1491911889:67739..67789 | Clytia hemisphaerica | exon |
TCONS_00049072-exon-scaffold_150-1491911889:67275..67342 | TCONS_00049072-exon-scaffold_150-1491911889:67275..67342 | Clytia hemisphaerica | exon |
TCONS_00049072-exon-scaffold_150-1491911889:66891..67017 | TCONS_00049072-exon-scaffold_150-1491911889:66891..67017 | Clytia hemisphaerica | exon |
TCONS_00049072-exon-scaffold_150-1491911889:66600..66626 | TCONS_00049072-exon-scaffold_150-1491911889:66600..66626 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_150 | supercontig | scaffold_150:66600..71567 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
Term | Definition |
IPR011545 | DEAD/DEAH_box_helicase_dom |
IPR027417 | P-loop_NTPase |
Vocabulary: Molecular Function
Term | Definition |
GO:0003676 | nucleic acid binding |
GO:0005524 | ATP binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005524 |
ATP binding |
molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00049072 vs. Swiss-Prot (Human)
Match: HFM1 (Probable ATP-dependent DNA helicase HFM1 OS=Homo sapiens GN=HFM1 PE=1 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 5.155e-24 Identity = 63/147 (42.86%), Postives = 82/147 (55.78%), Query Frame = 1
Query: 817 GNTQNNKRRKLDFNVSANQSYGNNTFLNKTVPPET-----------PANLQLQVGNDDDGSHNLKSIHEIPEKYRPIFP-FAYFNALQSKVFDEVMYSDNPMVICAPTGSGKTAIFEMSIIRLLLSTTN--FTYKIVYLAPIKALCS 1215
G ++N K F SAN NN F + P ++Q N G +LK++ EIP K+R IF F YFN +QSK FD+++Y+D VICAPTGSGKT +FE++I RLL+ KIVY+APIKALCS
Sbjct: 201 GKSRNYSNSKQKFQYSANVFTANNAFSASEIGEGMFKAPSFSVAFQPHDIQEVTEN---GLGSLKAVTEIPAKFRSIFKEFPYFNYIQSKAFDDLLYTDRNFVICAPTGSGKTVVFELAITRLLMEVPLPWLNIKIVYMAPIKALCS 344
The following BLAST results are available for this feature:
|