TCONS_00049071 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049071
Unique NameTCONS_00049071
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1416

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049071 ID=TCONS_00049071|Name=TCONS_00049071|organism=Clytia hemisphaerica|type=transcript|length=1416bp
GTTCCCTTCTGTGGAGTAGTCTTCACATTTTGTGCATTCTTCATCTTGAC
ATTTTGTGAAAGGTGGGCATTTGGGTGCATCTCCTCCTCTCGAACATCGA
ACAATCTTGGCATCCCATGCCAAATCATTCTTCTGCACGTCTGTGGTGGT
CACATACAGTTGCCACATGCAGCCTCCTTTCCACGGGTTTCCGTTTTCAT
AATAATCACACGAAAACGAGGTTTTGGTCGTCTGCTCATGCGTGCTGCTC
CACGTGTGGGCAACAGATGTAGCCACGCTGGTGGATACTTTCATGTCAAC
AAAGATGAGATTTGCTTCGATGGCCATTTCGACTGTCACAGAAACTTGAC
TTGTAACTTCGTTGGTATAGGAGACGGTGTTGTCGATTTCGTATGTTACT
GCGCCGTCTAAATTGCAGGAGATTTGGCGCCATTGTGAAGTCGGGGCGAC
CCAGTCTTCCGTAACCCATTCGAACCGTTGGTCTGGAAGACCTTCGCATC
GATACAAGTCGATGTCACCGTACCCATAAATGCCGTCTACATCCAAGCAT
TTGCTGGTCTGCTTGCTCATGAATGCTAGGTAGTTACCATCTGCATATTG
CGATGGTGTTGACCACATTTGATCCGTTCCCCCATAACACGTATTGGTTT
GTACGCTTTCAAGAGCATAACCGGTACCATCTGGATCCATACACGTGTTT
GATGCCATGTTCACAATCTCGCCGTTCTCGTAATGCGTCCAGTATTGCTT
TCGGCTATCAGTGCATGGTGTGGTGTGTATGTTTGAAGTCCAACCAGTGT
TATCAGCTGTCGCACACTGTCctgatttctgatttctcaACCGTCCAGAA
TTGACTACTTTCCCTCGGCTGCGGAAGTAGAAAAATTGGTCATATCTACT
CTCGCAATTAAAGATACCGATATTACCATGGCCCCCTGTACCACTTACGT
CGATACAAAGGTTGGATTTGACGTTCTTGTACTCGTAACCAGTCTGTTTT
ATTCCACTGGCGTCAGTGTAGGATCGACTTCcaccagttttgaatttttg
ataatCAGGAACAGATGGGTAAAGTTCACAAGGTTGAAATGTCAAATCTC
CAGTGCCAGCTCCAGTATTGCTTGGTGTTAAACAGTAGTTTTTTGCCATG
TTTCTGATCGTGCCATCATTGCAAGCAATGATTTGCTGGTCTGGTCTTCC
GTCACATGTCCATGTCTGGACCTCTCCGCTGCCAGTGTCGTCAGTGTCCA
TGCATACTTGAGACAGCATATTGCGCAATTCTCCAATGTGCAATGCAGAC
GGACAATTAGCATCGCCGTGCGCCAAATAAATGGCTGAAGCGAGAATCAT
GAAGACTGCAAACATTTTGATGTGTTTGTAGAGAGTGGGGTTGTTAACgc
cttttttagattttta
Run BLAST on NCBI

transcript from alignment at scaffold_150:3954..5422-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049071 ID=TCONS_00049071|Name=TCONS_00049071|organism=Clytia hemisphaerica|type=transcript|length=1469bp|location=Sequence derived from alignment at scaffold_150:3954..5422- (Clytia hemisphaerica)
GTTCCCTTCTGTGGAGTAGTCTTCACATTTTGTGCATTCTTCATCTTGAC
ATTTTGTGAAAGGTGGGCATTTGGGTGCATCTCCTCCTCTCGAACATCGA
ACAATCTTGGCATCCCATGCCAAATCATTCTTCTGCACGTCTGTGGTGGT
CACATACAGTTGCCACATGCAGCCTCCTTTCCACGGGTTTCCGTTTTCAT
AATAATCACACGAAAACGAGGTTTTGGTCGTCTGCTCATGCGTGCTGCTC
CACGTGTGGGCAACAGATGTAGCCACGCTGGTGGATACTTTCATGTCAAC
AAAGATGAGATTTGCTTCGATGGCCATTTCGACTGTCACAGAAACTTGAC
TTGTAACTTCGTTGGTATAGGAGACGGTGTTGTCGATTTCGTATGTTACT
GCGCCGTCTAAATTGCAGGAGATTTGGCGCCATTGTGAAGTCGGGGCGAC
CCAGTCTTCCGTAACCCATTCGAACCGTTGGTCTGGAAGACCTTCGCATC
GATACAAGTCGATGTCACCGTACCCATAAATGCCGTCTACATCCAAGCAT
TTGCTGGTCTGCTTGCTCATGAATGCTAGGTAGTTACCATCTGCATATTG
CGATGGTGTTGACCACATTTGATCCGTTCCCCCATAACACGTATTGGTTT
GTACGCTTTCAAGAGCATAACCGGTACCATCTGGATCCATACACGTGTTT
GATGCCATGTTCACAATCTCGCCGTTCTCGTAATGCGTCCAGTATTGCTT
TCGGCTATCAGTGCATGGTGTGGTGTGTATGTTTGAAGTCCAACCAGTGT
TATCAGCTGTCGCACACTGTCCTGATTTCTGATTTCTCAACCGTCCAGAA
TTGACTACTTTCCCTCGGCTGCGGAAGTAGAAAAATTGGTCATATCTACT
CTCGCAATTAAAGATACCGATATTACCATGGCCCCCTGTACCACTTACGT
CGATACAAAGGTTGGATTTGACATTCTTGTACTCGTAACCAGTCTGNTGA
CGTCGACACAAAGGTTGGATTTGACGTTCTTGTACTCGTAACCAGTCTGT
TTTATTCCACTGGCGTCAGTGTAGGATCGACTTCCACCAGTTTTGAATTT
TTGATAATCAGGAACAGATGGGTAAAGTTCACAAGGTTGAAATGTCAAAT
CTCCAGTGCCAGCTCCAGTATTGCTTGGTGTTAAACAGTAGTTTTTTGCC
ATGTTTCTGATCGTGCCATCATTGCAAGCAATGATTTGCTGGTCTGGTCT
TCCGTCACATGTCCATGTCTGGACCTCTCCGCTGCCAGTGTCGTCAGTGT
CCATGCATACTTGAGACAGCATATTGCGCAATTCTCCAATGTGCAATGCA
GACGGACAATTAGCATCGCCGTGCGCCAAATAAATGGCTGAAGCGAGAAT
CATGAAGACTGCAAACATTTTGATGTGTTTGTAGAGAGTGGGGTTGTTAA
CGCCTTTTTTAGATTTTTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031181XLOC_031181Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049071-exon-scaffold_150-1575043694:4451..5422TCONS_00049071-exon-scaffold_150-1575043694:4451..5422Clytia hemisphaericaexon
TCONS_00049071-exon-scaffold_150-1575043694:3954..4397TCONS_00049071-exon-scaffold_150-1575043694:3954..4397Clytia hemisphaericaexon
TCONS_00049071-exon-scaffold_150-1510915933:4451..5422TCONS_00049071-exon-scaffold_150-1510915933:4451..5422Clytia hemisphaericaexon
TCONS_00049071-exon-scaffold_150-1510915933:3954..4397TCONS_00049071-exon-scaffold_150-1510915933:3954..4397Clytia hemisphaericaexon
TCONS_00049071-exon-scaffold_150-1491911889:4451..5422TCONS_00049071-exon-scaffold_150-1491911889:4451..5422Clytia hemisphaericaexon
TCONS_00049071-exon-scaffold_150-1491911889:3954..4397TCONS_00049071-exon-scaffold_150-1491911889:3954..4397Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_150supercontigscaffold_150:3954..5422 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	290.247	237.501	903.611	946.698	568.554	674.817	320.6	243.578	141.343	150.643	468.372	419.07	67.298	109.059	104.742	49.6035	0	0	0	0	332.361	308.971	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000772Ricin_B_lectin
IPR028988CEL-III_C
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049071 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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