TCONS_00049070 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049070
Unique NameTCONS_00049070
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length670

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049070 ID=TCONS_00049070|Name=TCONS_00049070|organism=Clytia hemisphaerica|type=transcript|length=670bp
CTCATCCAATTGAGTAATCTTTTACAAATCTGTGGCCATGATAACAAAGA
ACGGATTGGACAAGTCAACATTAAAATTGCTGAATCAGCATTTGAGCATA
AAGATTACACATACGCTGGCATCGTTTGTGTACAGTTGGTGGATGATAAT
TATTCTAATGCTTGGTATATTTgcagGAAACTTGGTGAATGTGCCAAATA
CACAAACTTCACAATCAGGCAAAAGTTGTTGAGTTTTGCGTTACCTTATT
GTCCAGTACACCACATCGAAGAAGTTTTACAAGAGAAAACTCAACTGGAA
ACCCAGGTTTTGTACGAGAGATTGGGTGTATTTACGAAAGAAGGCAAGAA
AGACAAAATTGTGACGTCATCTAAGaaagaaactgaagaagaaaacaACG
AAGACAATGTCGATGGGAATAACATCTCAATCCTCAACAAAACCAAAACT
ACAACAAAGAAATTGATTTCAAGCGTCGCCAGCGTGGCTGATAACTGCTG
GGTTGGATCCGCAATGAATTGGGTCAAACCGTCGTCGGAAGGGTCTGGTA
ACCAAGTTGATGTTGTTGAGCGGGAAATTGAAAGCGTTCGGCATAACCCA
TTTTATAGTTCGCTGGATTCGAAAAAGATTGACGAAGATGTTCAAAGATT
TAATGTAAGTAATAGAACCG
Run BLAST on NCBI

protein sequence of TCONS_00049070-protein

>TCONS_00049070-protein ID=TCONS_00049070-protein|Name=TCONS_00049070-protein|organism=Clytia hemisphaerica|type=polypeptide|length=223bp
LIQLSNLLQICGHDNKERIGQVNIKIAESAFEHKDYTYAGIVCVQLVDDN
YSNAWYICRKLGECAKYTNFTIRQKLLSFALPYCPVHHIEEVLQEKTQLE
TQVLYERLGVFTKEGKKDKIVTSSKKETEEENNEDNVDGNNISILNKTKT
TTKKLISSVASVADNCWVGSAMNWVKPSSEGSGNQVDVVEREIESVRHNP
FYSSLDSKKIDEDVQRFNVSNRT
Run BLAST on NCBI

transcript from alignment at scaffold_150:42031..55141+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049070 ID=TCONS_00049070|Name=TCONS_00049070|organism=Clytia hemisphaerica|type=transcript|length=13111bp|location=Sequence derived from alignment at scaffold_150:42031..55141+ (Clytia hemisphaerica)
CTCATCCAATTGAGTAATCTTTTACAAATCTGTGGCCATGATAACAAAGA
ACGGATTGGACAAGTCAACATTAAAATTGCTGAATCAGCATTTGAGCATA
AAGATTACACATACGCTGGCATCGTTTGTGTACAGTTGGTGGATGATAAT
TATTCTAATGCTTGGTATATTTgcaggtacacgttttttttatagaataa
aactaactattcatgatatgcaatgacttcacgaaattatgcaacttttc
tgattttgttccacccaataatacgtcactttttctattgtttataaagt
gacgtattgggtggaaaattttgaaagttctcagaagactctccactgtt
gcatatcatggatataagaacataaagttttgatggccaaaatattttaa
ttcatgatatgcaccattgcaatgtcttccattccacccaatagctgatt
ggttgaaagtgacgttttgactgcttttacgtcacttccaaccaatgagc
tattgggtccatgacgtaatgtcagaagacattgcagtggtgcatatcat
gaataagaagttagaacattttaaaggctttgtggattctaaaacaccaa
atttcaaaaacatttttaggcataaaaccgaaaaagttaagaacatacgg
acccttaaaattattttgatgttcttataaaaatatgttAGCATAtaagt
ttttagtttttgaggCCTTGTCCTGCCTTGTCTGAGTCCGGTTGCCGTAT
CAATTCAAAACAGCTTAAATTCAGTGAAGATCTTTCGGCATTTTCAGTAA
CATTGGGTATCGATTTAACCTCCAACATTCgactactttaagggcagaaa
gtttcgcgggcagaaagtttcgcaaGACCGAAAAGTCGCTAAACTTCgcg
gatttaagtttcgcgatttttactttttgaagaaaatttacggaagaaac
tttcgcggttttttgtgaatgttcaattttagtagcaatgactttcgcga
gtggctagggaaagtgaataaaaaatcatttcaaatatcatttttttctt
caatcgaaagagtgatatgctaataaatgaaaaataaactatttgcaCTT
CTTCCTCCCATTCCGAATCCTAGCCAGTGCGATTATATCGATAATATCGA
CTCTCCTCGgctttaaaacttggaaaaaacgcgatttttaggaaaattta
atttttctcaaaattaactttcgcgaatctcttgtttaatttcttagCTG
GCAGAAACTTTggcgaaaaaatgccaaaaacgcgaaaaacgcgaaagttt
ctgcccttaaagtattaCAGTTGTTTCAATTCAAAAAAGGCTTTAACGCT
TTAAGCCACCAAAAGTTTAACGGATCTAAGAatcgaaaatatattttcag
acTTCAGACCTCAATCATGGAAAATCCCACAACTTCAAGTTTTACTTTCG
AAAGCTGGCTTGCAGAGGAGTTTGATAAATTGCTTCCTTTCCGTGCCCTC
GTGTCTTTCGTGCGCCTCCTAGGTAGTTTTCGGGCCCGAAAATAAGCCTT
TACTGACGTCCGAACCGAATTTCACTTGATCGACTTTCAGGCTATTATTT
GGCCTACGGATTCATGGGTTATGCGCTGATCTcaacttttgaataaaatg
gACTGAGTAGGATGCCTTGGATTGATACGACGCAACGAAGAAACTTTATG
GATACGCTAAAGATCTTGTCGGGAAAATTTAATAACATATGGAAAGTTTT
TGATGAAGGCATTCTATTTCCCTCACAATGAAATTCGGGGCTCGGTAatc
atttttaggttttttacTAACGATATTATGAAGGGAGTTATCCTTCATAT
ATGAACAGTTTTAGCTGGGAGGCACTTAAAGCACTTGAGTACAGAATTCT
TTTTCTATTGGAACAGGAAACTTGGTGAATGTGCCAAATACACAAACTTC
ACAATCAGGTATGTTTTATTGAGTAAACACAAGTTATAAAGGGTTTTAGG
TTTCAGATATTCATTTACATATCCTGAGCAAATCCCCAAAGCTCTTTGCc
taactacaatcatggtcaaaatctaaTGAGAATTTAGCtgatttcctcgt
ttttcaaaattttgagttcGGGCGAgcaagtcgattttgggccatctttt
aaatttaatcggatTATTTCAATTTAGCACGGGTTTATAGAGTTACGctt
tattggactatttttgaacttttggatcctcagatcctaaaaTCTTAGGT
TTTAAGTCTTAGCTTTAAAACTCACAGTttaaactctacccttccaacct
aacttagagcacttccaaatcgtttgtggttttgaaaattcgtgGGAAAA
AAAAGAAcccatttttagaattttcaaattgtgatatctCAACTTTGGAA
CATAGTTacacaaaaataacttttaatagCACCAAATCACGCTTAACGTT
TTTTTCCTTTCCTGATTTTTCGTTCCCTTATTGAAAATAGAACTAtggag
aatatttttttctctctcattTTCCAGGCAAAAGTTGTTGAGTTTTGCGT
TACCTTATTGTCCAGTACACCACATCGAAGAAGTTTTACAAGAGAAAACT
CAACTGGAAACCCAGGTTAGATattatttgaaatcttttttttaaggcCC
AGTTGTGGATCTGAGGAgggttcaaaatttatgacagGGGTAGTCTTCAT
TTCCTTATAAGATATGGTTAAGAAATCCCCATTGACCATTTTTGCGGGAA
TTGCGTTTTTAGTAACCCATTTTTTTATCAACAGTGCATTGTCTGGGCTC
AGTTTCTAAAATTGATTCATACACCTTTTTTACTCTAATAATTTTGGTAC
GGGGGGTTGGGTGTATTTTCACGAAAAGGGAATAAAggacaaaatgacaa
aaggaAGATAATATTGAGTCTTATCGAGGTTACCACTTTATTGATGTGCC
TCAGAACAGAACTGTGACAATTGAACATGGATGTTACAcgattttcttta
taagaacgatgttttttcatttcagaatggatattcttaactttttgggg
aaaatcatcctaaaataatatattcttacagtatattCTTCGGTTATGAT
CCAACCTAGCCTAATTCTACCATGTAATACATACCTTGAGCAAAGATTCG
CAAAGATTTTTGTGAAAGCTTTTAGCATTACTGGGGGATAAATGGCAGTT
ATTCTTAACAAGTTCTTAATGTTTTGCcgatttcatcatgaatatttttg
taCAGTATattcttattataaaaaaaacgtgaaacTTATTTCTTACTCTG
CATAGGTTTTGTACGAGAGATTGGGTGTATTTACGAAAGAAGGCAAGAAA
GACAAAATTGTGACGTCATCTAAGaaagaaactgaagaagaaaacaACGA
AGACAATGTCGATGGGGTATGTCGTTTCTTTATTAttaatattttataag
aactatactCTGCGAGGCTCAAAAAATGTTTCATAAATAAGAACAATATT
TACGAGCAATCCTGAACCAAGAATTTGTGCTTTGTTTCCATATTTTCAAG
CAACTTTCAAGTAAGTAGTGTGAATAACCCTTAGTACAGAGATGTGTGCT
GCTTCACGTAAAAGTCATATTTAATGATGATAAACACGTCAACAACAACA
TAAGATAAACCAATACCAATTATGTTGTTATGACGTTTGTATGCATTAAg
agaataaaaaaacatggAATCAAGCATGTAGTTACACACTTCTTATTTTT
CTTCTCCATGGGTAAAGCTAAcagaaaaattaataaaagaatTCTTCGAT
AGCATATTCACCAAGTCATAAATCTTCTCACATTCTCTTTCTTTGACTGG
CTGGTACTGTCCAAATAATCGAAAAGTTGACTATAACTGTTCAAGAAAAG
GATTCTACTGCAACAAACACCATGAATCTATCAGCAAAGTACAACACAAC
TTTCTGTCACGACCTTCCGATAGCTGTTGGTAATAAAACATTTTGTGGCT
TAACAGAAAAGTGGACACCTCGATTCAATCATGGAACCTTATTGGCAATG
ACGTTGACTCCAGTTTTGATTTACTGGTTAGTTTTACTTCTGACGGTGAG
AAAGCTTTTCAACAAGCTTCGTTTATTTAGACAATGGCGAAAGACAACGG
TTAGATATACTAAAAAAAGAGAGGCGTTATTACGTGTGTATTACAAACAA
GTTTTTCCAAATAATGACCCCGAGTATTTTATATGGCAACTCATTTATGT
CAAAGGTGGTGGGTATGAAAATTTGGAAGGAGTTAAAGAACTGTTTGATG
AGAACTCAAATCAAGACAGCActcccttttttgaaaagttgagaAATATT
TATATTGCTGGTTTGAAACAAAGTTATCGCAGTGGGCTTTTATTCAACCT
TAAAACATATTTCTCTTTGATTGTATTGATTTTGCTCAAATACTTTTGGG
ATGCCATCGATTTAACTTTGGATGTTTACATCTTCTACCGATTGGAGCGA
GGTGAGATTTTGGATGACGCAATTTACCGAAATACCAATGTCAATACTGC
TATTTATGTATTCGCCGTTCTTGGATGTATTGCTAAGATAGGAGCTTGGA
AAAACTATAGTAATACTGAAAGAGGACTTATCAAAACAGGCGAACGCGAA
TTGGAAGATACCTTCAATTTCTTGAAACATGTAATTTTTACGATTAGCTT
TCTTTATGAAGACGGACCTGAATCGATTTTGGAATATTTCTACATTgaga
aatacacgtttttttttttataagaacaaactatataagaacataaggct
tcgaggcccaaaaatttaagaacattctaagaacattctaaggggctttg
gagacttaaaaacatgcattttcttaagaaattacatcaaaatgctcaac
aaatgctaaaaataagaacattttaagaacatttttaggcttcaaatcca
aaaaactaagaacatccgaaggcttcgaaaatttttgacgttcttataaa
aaaaaaaacgtgtatatcacTTCCTACACCCCGTTGATTATAGTCAAAGA
TACTGTTGTTGCTTGCCTCTTCATCCTCACATTGATCATGATATTGAAGT
CCAGTATAAAGGCAATCACTTCACACATCACTTCACACTACGAATATTTT
AGCTTCATAGTAGCCGCTGTAACCAGTGCTTCTATATTACGAGTGGGTGG
TGCTTTATATCAATGTATAACCAAGAAATTGAGGAGATCTTGCTTCTTGG
TTGACAATGGAAGGATTTTACAAACACCTTTTAATATCGGATGTTTGAGA
GGTGTAGACTATGCTATTCTTGTATTGGTTAGTGTACCCTTATTATGTGT
ACTGCTTTCGCCTACACGTTTTCTTTCTTATAAGGGCccttataaggaac
cttaactttgctctgagcctggagctcctttttttttcagagaatttcag
tctcaaagttccttatcgagttccttactacataggaaattttgaacttt
ttgccccttgaaagatcaaaatttggtcaaattagtcNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNcattattttcaaatccacttattctcagcctg
agcagttccttaacaattccttatttttgaaccattttcagcctcgagtt
ccttataaacgtgttccttatataaaaaaaaacgtgtatatattaTAGTA
TTTTTGGACGTGACACGTCTTTTTGTAGCTGTAGGTCCGGCGATGAAAGC
TCTGTccgtttgtttgttttttttggactttgtgaaaaattggatcatta
attttttctgattttttccattaaagtagggtaccatcataggtaaagat
tattattcttattattattagtttttttaagatgaaaatgttcgGTGGGg
gcaatggtttgagttttctagaaacatttattattttttggctgaaaaac
gaatctttatctataagaattactatttataagcatagatcaatgttctt
agccaaattattatttgtattattattttttctaaaagaagaaaatgtca
cggtagagcgcgatgatttgagttttctggaaaccttatttattaaggtg
tgtatttttctgatagtggattgtttttataaagaaaagcgtttaatagc
ttttttatttctttttcaaaagtctttttcaatagtgttgatagtttctt
cCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNAAAtattgggaaggccagttttagagatatgaa
tctaatcaattattctattgtctttatgctgacaaaatgactaatttcga
cagaaataacgATCTGATGATGCAATACAAAGCTTttcaaaccattttca
aaagattttgtgcCACTAATTATTGTGATGCCGATAATGCAAAAGGTTTC
GTCCAAGCATCTGAAGAAAAGAGAAAACTGTGGAgttatttttgagattt
aatCGACTAATCTATACAGCACAGGAAATAACGATTTTGAGTAGGCTACA
AAAAATGTCCGATAAGGGTTACTttggcttgaaaattatgacttCAGACG
GATCTCATTATATTCTTACCATAGTATagtttttatgtgaaaaataaaac
gTTTTAATGAAGATAATATACACCACTTGTATTCTTTTCCTGGTAATTTC
AAAAGTTGAAATGGTCCGGTTGGGCCGGTTACAGAATTCGTCCTATTTTT
GTCAATCCGACATTAAAATTCAACCCGACTTGGAGACTAATAACTGTACG
AATATCAGACTGATATGATTAGGGTTTGGAGTAATTCAGTGTGTCTACGG
GTCCCACAGACCTTTGAAACCTgggtatatttttgaaaaatgtaaccCTC
ATGTCTcagatttctttgaaattattaatgagaaatgaaaatcctgaaaa
ttttagCCTTGTAGCTTTTTTAGTTCCCAAGATATCgccatttgaaattt
ttccccTTTTTGCTTTGCGGTcccaaaatccgccattttgaattcacgtt
ttttttaatatttcctACTAAATGAAGAATGCTACAGGGCTGAAATTTGG
ATTTAGGGTAATTTTGAGGTAAGGAATCCAAAAAAAGCACTTAAAACCAT
CAGAAATGAAGTTTTGACATGCTATTGATCTGTTTGATCTTGCAAAGACC
ACTGAAAAACCAAATATTAGATTATGAATCAATGCTAGATTTGTGTGTAA
CCGAATTAAAGGACGTACATTTTGTTGGAATAAGCCAAGAGGAAATGAAG
GTAGTTagagaagaattgaaaaaaatgttttgatgctGGTGATACTGTTC
CAGGAACAAGAAAAAGCCATCATTTTGTACCTCAATCCAAGTCGAAAATC
ACTCACAAGTTGACAAGTGAGGTTAATAActccataattttttattttaa
attaaagGTATTTGAGCAGATTTATATTGCGTCCTTGAAAAACTTTAGCT
ATGTTGCATGTGTTTATGGAGACTTTTGGTGGATAGGAATGATTACAGAA
ATTGACATGAATAAGCAAGATGTATTAATTGAATTTTTACACCCTCATGG
ACCTCGTAAAAACTTTTACTAGCCCACCAAACAAGATAAGACAACAACAG
GAAGAATGTATAAAATTTCGGAGAAAGATCATGCTAATATTATCTTTTCA
TATGATTGTTTTGTTAACAAGGTTTAGAATTTTCTTTACCAATACACTAG
TTACAATGCAATGGATTCTAGCTTGTATTGGGACACCAGCAACAACAACA
GGAAGAATGTATGAAATTTCGGAGAAAGATCATGCTAATATTATCTTTTC
ATATGATTGTTTTGTTAACAAGGTTTAGAATTTTCTTTATCAATACACTA
GTTACAATGCAATGGATTCTAGCTTGTATTGGGACACCAGCAACAACAAC
AGGAAGAATGTATGAAATTTCGGAGAAAGGCCATGCTAATATTATCTTTT
CATATGATTGTTTTGTTAACAAAGTTTAGAATTTTCTTTATCAATACACT
AGTTACAATGCAATGGATTCTAGCTTGTATTGGGACACCAGCAACAACAA
CAGTGGCTAAACGCGTGTAAAGAAGCACAAGAAGAGATACGAAAAACAAA
AGAGGAAAGCTGGAAGGACCTGCTAGAATCGACGTTACAAGAAAACGATG
ATCGCAAACTGTGGAACATTGTAAATTCCCTGAAAGGATGCCCGGAAACA
AACTCCCCAAACGAGACTATGAGACACAACGGTCGAACGATCTCctcaaa
caaaaagaaagcaaaCCTGTTTATACAACATTACGCTAAAGTTAGTCGAC
ACAAATTCACAAAGGATGAGAGATCACTAAATAGAAACCTCAAGAAAAGA
CTAGAAGCACCCTCCGTTGACACGGAACACGGAAGAGACTTCACCATCGG
AGAATTAAAGAAagtaatttcaaaaatgaaaagaaaaggaGCACAAGGAC
CGGATGAGACCGACATTCCTTAAAGAACTTGGCCCAAACGCCCAGCAAGA
ACTTCTAACAATCCTAAATATGTGCCTACGTAATGCAGCATGCCCCCATA
TTTGGAGAATAGCAACCATCTTACCACTTCTAAAAGCTAGCAAACCCACA
AGCGAGCTTGCCTCCTTCCGCCCCATCAGTCTAACTTCGTGCGTCTCAAA
ATGCTTCGAAAGGATGATAGCAGAACGCCTATACTACtagggggggggcg
tacggggttcgcgatttccgaaataccgaataattttgccaacatttccg
aaattccgtaaaaaaatacttgcaattccgataccaattttttgggtatt
atcctcgttttgactaatttttcatcaaatttcccaaaattccgaaaaat
agggataaaaactttacaataccgaaatttcgaagctaAAATttatggat
ttccgataccgaaacaatttcagaattccgaaataccgaaggaattttga
cTGATTTCCGaatttccgaagaaaaaagggtcgatttccgNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGACAGACTGCT
CAACTTTGGCCCACACATCGATACCATCATACAAAGAACGGAAAGAAAGC
AAAGAATCCTCAATGCAGTGGCGAACACTGAATGGGGATGGAACAAAGAA
AAGCTCATCCAAATATTCATTGCACATGCCTCTAGCACAGCTGAGTATGC
AGCCTTTGCGTGGCTGCCAAGCACCGCCAAATCCCACCTAGAAAGACTGG
ATCGAGCACAGAACAAACTACTTCGAGTGATCACCGGACAGTACTTGGCG
ACTCCAGTCGAAGCACTCCGATTGGAATGCGGAATTCCAAATCAAAACAC
AACCAGAGACAGGCTAATNtcgtacgccccccacctaCTACGCAGAGACA
AACAACATCTTGGACAGCAAACAAGCAGGATTCCGAAAAGGTAGAGGATG
CGACGACCAGATAGGAAGAATAATACAAGCAATCCAAGACGGGTTCAACC
AAAAACCTATGCAGAGGTCAACATTGGTTCTGCTAGACTTTTCAAAAGCG
TATGATACAGTATGGAGGGAGAAATTAATACACACACTGATAGACGATGG
AGTACCAATGTCAATTGTAAGATGGCTTGCTAGCTTTCTCCGTGATAGAC
AAGCAAAGGTCAACTNTGCTAGACTTTTCAAAAGCGTATGATACAGTATG
GAGGGAGAAATTACTACACACACTGATAGACGATGGAGTGCCATTGTCAA
TTGTAAGATGGCTTGCCAGCTTTCTCCGTGATAGACAAGCAAAGGTCAAC
TTCAATGGTGCCACCAGCAAGAGTCGTAAGATAAAACAAGGTGTCCCACA
AGGATCAGTACTGTCTCCTATACTCTTCTTGTTCTACATAAACCAACTGG
CCAAAATCTTACCACAAGAAACACTCAACGCCCTATTCGCAGACGATGTG
TCAATACTCGCAACCGAAAAGACAAAAGAAGAAACAGAGAGGAAAGCGCA
ACAAACTGTCGACGTGGTCACCAGCTGGGCCCAAGAATGGAAGATCAGTC
TAAACGCaacgaaaagtgaagcaagctTCTTCAGCACATGGTCACAAGAG
GCTACATGGATGCCAACCATCACAATTGACGGACAGCCCATAAAGAAAGA
GAAAACACCTCGATTACTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAGCTGGACGCAA
TGCAAACAACCGCAAATTGGATCTCCTTAAACTGCGACCCAGAAATCAGC
ATCATGGTCTGCACGGACAGTCAGTCACTATGCCTAGCCTTATTAAGCTA
CAACGTCGAAACAGCAACAATAAGGGAAGCACTACACAACAGACCAGGAA
TAACGATCATCCAATGGATCCCGGGCCACTCAGACGTCCCAGGAAACGAA
CTCGCTGACCAAGCAGCCAAAGAAGCGACCAAATTAGAGGCAGACCCCAG
ACCAATATCACTGAAGTGCCTGCACAATGATAAGAAGCAGAATCAAACAC
CCGACGAACCACCAACAATTAAAGAAGGTCTACAGTCATTTCTCTAAACA
ACGTGAACAAGAGGTTAAAACCAGAGCGGATCAAGTCCTACTGGCACAAC
TGAGAAGCGGAAAACACAAGGTCTTCCGTAGCTACCAACATATGATAGAT
GAGAGCATTGACCCTACAAGCACCAAATGTGACAGCGGGGAAATACACAA
CCTCGAACACTGGTTCCTCCGCTGCCCAGATGCATCAGAAGCAAAACAcg
aaatttttgatgaaaatgaactTGAGGTGGGCCTGGGACTTCTCACAAAG
TGCCCTGAGAAGTCGATTGTCCTGGCGAAGAGGACTCTCTTCGGGGTTCA
GCAATGACCCAGTattcacacacacacacacacaacaACAGGAAGAATGT
ATGAAATTTCGGAGAAAGATCATGTTAATATTATCTTTTCATATGATTGT
TTTGTTAAcaaggtttaaaattttctttgagtcCTATTTTCAATACTTCA
TTGTAAATTATAATCGTTATGTGTCAGAAAAATTTGCTAGCTTTCCCCAT
TTGAACCTTTGAAAAATACCCTGTCTTTGATCTTTGATTTTGACTGATCT
AAAAGAGaacattcttagttttttggtcaaattgCAGTTCAAGTACTCTA
AATTCTGATGAAAaacaaattccccaaaaaagtTTGGCCACGCCCCTTTT
TTGGTTACATGATCTACCAAGGGAGAAGAATTAAAACAAATCTATAGCAT
GTTAAGACTTCATTTCTGATGGTTTTAAGtgttttttttgaattcctcgc
ctcaaaattaccCTAAATCTAAAATTTCAGCCCTGTAGGATTCTTCATTC
AGGAAATATTAAAGAAAAcgtaaattcaaaatggcggattttgggACTGC
AATGCAGAAAGGGGCAAAATTTTAAATGGCGATATCTTGGGAACTAAAAA
AGCTATGAGGCtgcctatttttaaaatttaatattataaatttttaatat
tttggaaaGTTGTAGATAGTCTCTCACTGGGAATTggataagatttttca
aaagttataacaCGTATCCTAAGCTTCAAAAAAGCTGAATCAATTACTGT
AGTCCGTAAAGTAAAATGTCAACAAACTGACGTCGACAACGTCTTTACGC
CGCTAATGCTTGAACtctcaaagttatttttttatttttttttattttac
atataTTTGGCTTCAATTTATACAAATTGTTCTTCTGCCTAAACttaaaa
gtaaaaatgaaaatataaaagaataaaatatatatataaatttgtATTAA
CATGTAAAAGTTTAAAGGATGTTTGCGACCCAGAGACTCGAAAAAATGAA
ACTTGAGAAGTAACCTAACTAACCTAAATTGAAACGAAAGATGTGGTGGT
TGGGTAAATATAGAGTCGATCGAAAGGTCTAAAATGTGTGTATCGGCAAA
gtagcaaaaaatattttgtaataaaaaaaaaatagagataAATTAATTCT
GTTTCTAGAATAACATCTCAATCCTCAACAAAACCAAAACTACAACAAAG
AAATTGATTTCAAGCGTCGCCAGCGTGGCTGATAACTGCTGGGTTGGATC
CGCAATGAATTGGGTCAAACCGTCGTCGGAAGGGTCTGGTAACCAAGTTG
ATGTTGTTGAGCGGGAAATTGAAAGCGTTCGGCATAACCCATTTTATAGT
TCGCTGGATTCGAAAAAGATTGACGAAGATGTTCAAAGATTTAATGTAAG
TAATAGAACCG

Coding sequence (CDS) from alignment at scaffold_150:42031..55141+

>TCONS_00049070 ID=TCONS_00049070|Name=TCONS_00049070|organism=Clytia hemisphaerica|type=CDS|length=3345bp|location=Sequence derived from alignment at scaffold_150:42031..55141+ (Clytia hemisphaerica)
CTCATCCAATTGAGTAATCTTTTACAAATCTGTGGCCATGATAACAAAGA
ACGGATTGGACAAGTCAACATTAAAATTGCTGAATCAGCATTTGAGCATA
AAGATTACACATACGCTGGCATCGTTTGTGTACAGTTGGTGGATGATAAT
TATTCTAATGCTTGGTATATTTgcagGAAACTTGGTGAATGTGCCAAATA
CACAAACTTCACAATCAGGCAAAAGTTGTTGAGTTTTGCGTTACCTTATT
GTCCAGTACACCACATCGAAGAAGTTTTACAAGAGAAAACTCAACTGGAA
ACCCAGGTTTTGTACGAGAGATTGGGTGTATTTACGAAAGAAGGCAAGAA
AGACAAAATTGTGACGTCATCTAAGaaagaaactgaagaagaaaacaACG
AAGACAATGTCGATGGGAATAACATCTCAATCCTCAACAAAACCAAAACT
ACAACAAAGAAATTGATTTCAAGCGTCGCCAGCGTGGCTGATAACTGCTG
GGTTGGATCCGCAATGAATTGGGTCAAACCGTCGTCGGAAGGGTCTGGTA
ACCAAGTTGATGTTGTTGAGCGGGAAATTGAAAGCGTTCGGCATAACCCA
TTTTATAGTTCGCTGGATTCGAAAAAGATTGACGAAGATGTTCAAAGATT
TAATGTAAGTAATAGAACCCTCATCCAATTGAGTAATCTTTTACAAATCT
GTGGCCATGATAACAAAGAACGGATTGGACAAGTCAACATTAAAATTGCT
GAATCAGCATTTGAGCATAAAGATTACACATACGCTGGCATCGTTTGTGT
ACAGTTGGTGGATGATAATTATTCTAATGCTTGGTATATTTgcagGAAAC
TTGGTGAATGTGCCAAATACACAAACTTCACAATCAGGCAAAAGTTGTTG
AGTTTTGCGTTACCTTATTGTCCAGTACACCACATCGAAGAAGTTTTACA
AGAGAAAACTCAACTGGAAACCCAGGTTTTGTACGAGAGATTGGGTGTAT
TTACGAAAGAAGGCAAGAAAGACAAAATTGTGACGTCATCTAAGaaagaa
actgaagaagaaaacaACGAAGACAATGTCGATGGGAATAACATCTCAAT
CCTCAACAAAACCAAAACTACAACAAAGAAATTGATTTCAAGCGTCGCCA
GCGTGGCTGATAACTGCTGGGTTGGATCCGCAATGAATTGGGTCAAACCG
TCGTCGGAAGGGTCTGGTAACCAAGTTGATGTTGTTGAGCGGGAAATTGA
AAGCGTTCGGCATAACCCATTTTATAGTTCGCTGGATTCGAAAAAGATTG
ACGAAGATGTTCAAAGATTTAATGTAAGTAATAGAACCCTCATCCAATTG
AGTAATCTTTTACAAATCTGTGGCCATGATAACAAAGAACGGATTGGACA
AGTCAACATTAAAATTGCTGAATCAGCATTTGAGCATAAAGATTACACAT
ACGCTGGCATCGTTTGTGTACAGTTGGTGGATGATAATTATTCTAATGCT
TGGTATATTTgcagGAAACTTGGTGAATGTGCCAAATACACAAACTTCAC
AATCAGGCAAAAGTTGTTGAGTTTTGCGTTACCTTATTGTCCAGTACACC
ACATCGAAGAAGTTTTACAAGAGAAAACTCAACTGGAAACCCAGGTTTTG
TACGAGAGATTGGGTGTATTTACGAAAGAAGGCAAGAAAGACAAAATTGT
GACGTCATCTAAGaaagaaactgaagaagaaaacaACGAAGACAATGTCG
ATGGGAATAACATCTCAATCCTCAACAAAACCAAAACTACAACAAAGAAA
TTGATTTCAAGCGTCGCCAGCGTGGCTGATAACTGCTGGGTTGGATCCGC
AATGAATTGGGTCAAACCGTCGTCGGAAGGGTCTGGTAACCAAGTTGATG
TTGTTGAGCGGGAAATTGAAAGCGTTCGGCATAACCCATTTTATAGTTCG
CTGGATTCGAAAAAGATTGACGAAGATGTTCAAAGATTTAATGTAAGTAA
TAGAACCCTCATCCAATTGAGTAATCTTTTACAAATCTGTGGCCATGATA
ACAAAGAACGGATTGGACAAGTCAACATTAAAATTGCTGAATCAGCATTT
GAGCATAAAGATTACACATACGCTGGCATCGTTTGTGTACAGTTGGTGGA
TGATAATTATTCTAATGCTTGGTATATTTgcagGAAACTTGGTGAATGTG
CCAAATACACAAACTTCACAATCAGGCAAAAGTTGTTGAGTTTTGCGTTA
CCTTATTGTCCAGTACACCACATCGAAGAAGTTTTACAAGAGAAAACTCA
ACTGGAAACCCAGGTTTTGTACGAGAGATTGGGTGTATTTACGAAAGAAG
GCAAGAAAGACAAAATTGTGACGTCATCTAAGaaagaaactgaagaagaa
aacaACGAAGACAATGTCGATGGGAATAACATCTCAATCCTCAACAAAAC
CAAAACTACAACAAAGAAATTGATTTCAAGCGTCGCCAGCGTGGCTGATA
ACTGCTGGGTTGGATCCGCAATGAATTGGGTCAAACCGTCGTCGGAAGGG
TCTGGTAACCAAGTTGATGTTGTTGAGCGGGAAATTGAAAGCGTTCGGCA
TAACCCATTTTATAGTTCGCTGGATTCGAAAAAGATTGACGAAGATGTTC
AAAGATTTAATGTAAGTAATAGAACCCTCATCCAATTGAGTAATCTTTTA
CAAATCTGTGGCCATGATAACAAAGAACGGATTGGACAAGTCAACATTAA
AATTGCTGAATCAGCATTTGAGCATAAAGATTACACATACGCTGGCATCG
TTTGTGTACAGTTGGTGGATGATAATTATTCTAATGCTTGGTATATTTgc
agGAAACTTGGTGAATGTGCCAAATACACAAACTTCACAATCAGGCAAAA
GTTGTTGAGTTTTGCGTTACCTTATTGTCCAGTACACCACATCGAAGAAG
TTTTACAAGAGAAAACTCAACTGGAAACCCAGGTTTTGTACGAGAGATTG
GGTGTATTTACGAAAGAAGGCAAGAAAGACAAAATTGTGACGTCATCTAA
GaaagaaactgaagaagaaaacaACGAAGACAATGTCGATGGGAATAACA
TCTCAATCCTCAACAAAACCAAAACTACAACAAAGAAATTGATTTCAAGC
GTCGCCAGCGTGGCTGATAACTGCTGGGTTGGATCCGCAATGAATTGGGT
CAAACCGTCGTCGGAAGGGTCTGGTAACCAAGTTGATGTTGTTGAGCGGG
AAATTGAAAGCGTTCGGCATAACCCATTTTATAGTTCGCTGGATTCGAAA
AAGATTGACGAAGATGTTCAAAGATTTAATGTAAGTAATAGAACC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031180XLOC_031180Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049070-proteinTCONS_00049070-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049070-exon-scaffold_150-1491911889:42031..42206TCONS_00049070-exon-scaffold_150-1491911889:42031..42206Clytia hemisphaericaexon
TCONS_00049070-exon-scaffold_150-1510915933:42031..42206TCONS_00049070-exon-scaffold_150-1510915933:42031..42206Clytia hemisphaericaexon
TCONS_00049070-exon-scaffold_150-1575043694:42031..42206TCONS_00049070-exon-scaffold_150-1575043694:42031..42206Clytia hemisphaericaexon
TCONS_00049070-exon-scaffold_150-1491911889:43947..43988TCONS_00049070-exon-scaffold_150-1491911889:43947..43988Clytia hemisphaericaexon
TCONS_00049070-exon-scaffold_150-1510915933:43947..43988TCONS_00049070-exon-scaffold_150-1510915933:43947..43988Clytia hemisphaericaexon
TCONS_00049070-exon-scaffold_150-1575043694:43947..43988TCONS_00049070-exon-scaffold_150-1575043694:43947..43988Clytia hemisphaericaexon
TCONS_00049070-exon-scaffold_150-1491911889:44558..44645TCONS_00049070-exon-scaffold_150-1491911889:44558..44645Clytia hemisphaericaexon
TCONS_00049070-exon-scaffold_150-1510915933:44558..44645TCONS_00049070-exon-scaffold_150-1510915933:44558..44645Clytia hemisphaericaexon
TCONS_00049070-exon-scaffold_150-1575043694:44558..44645TCONS_00049070-exon-scaffold_150-1575043694:44558..44645Clytia hemisphaericaexon
TCONS_00049070-exon-scaffold_150-1491911889:45336..45446TCONS_00049070-exon-scaffold_150-1491911889:45336..45446Clytia hemisphaericaexon
TCONS_00049070-exon-scaffold_150-1510915933:45336..45446TCONS_00049070-exon-scaffold_150-1510915933:45336..45446Clytia hemisphaericaexon
TCONS_00049070-exon-scaffold_150-1575043694:45336..45446TCONS_00049070-exon-scaffold_150-1575043694:45336..45446Clytia hemisphaericaexon
TCONS_00049070-exon-scaffold_150-1491911889:54889..55141TCONS_00049070-exon-scaffold_150-1491911889:54889..55141Clytia hemisphaericaexon
TCONS_00049070-exon-scaffold_150-1510915933:54889..55141TCONS_00049070-exon-scaffold_150-1510915933:54889..55141Clytia hemisphaericaexon
TCONS_00049070-exon-scaffold_150-1575043694:54889..55141TCONS_00049070-exon-scaffold_150-1575043694:54889..55141Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_150supercontigscaffold_150:42031..55141 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.54452	1.28436	1.66586	1.38227	1.4943	1.397	4.44145	4.21465	2.49164	3.23141	4.65382	3.40903	3.97333	2.35068	2.86892	4.44661	2.45941	3.35695	0.899891	1.66156	3.65996	3.21263	3.20998	3.60648	6.3043	8.14168	1.63075	2.43043	6.6439	5.70396
Blast
[Close]
BLAST of TCONS_00049070 vs. Swiss-Prot (Human)
Match: NBAS (Neuroblastoma-amplified sequence OS=Homo sapiens GN=NBAS PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 6.225e-20
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 1 
Query:    1 LIQLSNLLQICGHDNKERIGQVNIKIAESAFEHKDYTYAGIVCVQLVDDNYSNAWYICRKLGECAKYTNFTIRQKLLSFALPYCPVHHIEEVLQEKTQLETQVLYERL 324
            L+ L+ LL++ G + +ER GQV I + E A    DY  A + C +L+   Y  +W +C +LG+   Y +   RQ+L++FAL +CP   IE +L   + L+T++LY+R+
Sbjct: 1262 LLGLAELLRVAGENPEERRGQVLILLVEQALRFHDYKAASMHCQELMATGYPKSWDVCSQLGQSEGYQDLATRQELMAFALTHCPPSSIELLLAASSSLQTEILYQRV 1369
The following BLAST results are available for this feature:
BLAST of TCONS_00049070 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NBAS6.225e-2037.04Neuroblastoma-amplified sequence OS=Homo sapiens G... [more]
back to top