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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049064 ID=TCONS_00049064|Name=TCONS_00049064|organism=Clytia hemisphaerica|type=transcript|length=922bp
tgaaaaatactgcAAGAATCTGAAAAAGACTGAACGAAAATACAGAATAT
CACAAAATCTACTAACACTATTTTCACATTAAGCTCATCGACATGAATAG
AGCTAACGACATCGTTTTGCTTGTGGTTCTACTCGCACTCACCTTCAATC
AAAGTACGCATGCGCagaagtttgaagttttagatGATGGTCAAGATCTT
CTGGCTGAAATGTGTCCAAGTTGTAGAGCTCATATCAATGTGTGCCAATA
TCAACGTGTTTTTCGTAATAATGCACGTACGGAAATGATGTGTTCACAAC
TGAAAACTGAATGTCACCAATGTTTGTTACCATATCTCATCTCTGAGCAA
GACACCAAAAGTGCTGAGTCAGCTGATATGCACCAGATGACCGAGAGCAA
TCATTTAGCTAACGATGCTGGACAAGAttcaaatgatgttttggaAGACC
TTCTCGATAGCACGCAACAAATGGAAGACACACAATTCTCATCAACACGA
AGCAAACGTGGTTGTGCGCTTACGTGTGAAGCCGCACGACACATGTGTGA
TAACCATGCTAAAATTGACAATTATATGAAATTATTACGATGCAAACAAA
AGGCTAATTGTAAAGGATGCTTAAAActtgtttaaaaattttatttaaat
ctcAAATTTTAGGGCTATAAATGTTGTAAATAACAAAGCTTTAGAATAGA
AAATAATCATCCTGCTTTTGCGGTatattatgttattttttccGTAATTG
CAGGGTATTCAGTCTGATTTATACAGATTATTATGTCTGCTGGTTCAGTT
TAGtgataaaaattgataaacttCCAATTCTTAAATTGTCGTATTTTTTC
AGCTTCACAAGGGTTCGTTTGGCGCTTACAGGCCCGGCAGAAGTGGGGAA
ACATTTCTAGCGAAtgtatctc Run BLAST on NCBI protein sequence of TCONS_00049064-protein >TCONS_00049064-protein ID=TCONS_00049064-protein|Name=TCONS_00049064-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MNRANDIVLLVVLLALTFNQSTHAQKFEVLDDGQDLLAEMCPSCRAHINV
CQYQRVFRNNARTEMMCSQLKTECHQCLLPYLISEQDTKSAESADMHQMT
ESNHLANDAGQDSNDVLEDLLDSTQQMEDTQFSSTRSKRGCALTCEAARH
MCDNHAKIDNYMKLLRCKQKANCKGCLKLV Run BLAST on NCBI transcript from alignment at scaffold_15:493079..494000 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049064 ID=TCONS_00049064|Name=TCONS_00049064|organism=Clytia hemisphaerica|type=transcript|length=922bp|location=Sequence derived from alignment at scaffold_15:493079..494000 (Clytia hemisphaerica)
gagatacaTTCGCTAGAAATGTTTCCCCACTTCTGCCGGGCCTGTAAGCG
CCAAACGAACCCTTGTGAAGCTGAAAAAATACGACAATTTAAGAATTGGa
agtttatcaatttttatcaCTAAACTGAACCAGCAGACATAATAATCTGT
ATAAATCAGACTGAATACCCTGCAATTACggaaaaaataacataatatAC
CGCAAAAGCAGGATGATTATTTTCTATTCTAAAGCTTTGTTATTTACAAC
ATTTATAGCCCTAAAATTTgagatttaaataaaatttttaaacaagTTTT
AAGCATCCTTTACAATTAGCCTTTTGTTTGCATCGTAATAATTTCATATA
ATTGTCAATTTTAGCATGGTTATCACACATGTGTCGTGCGGCTTCACACG
TAAGCGCACAACCACGTTTGCTTCGTGTTGATGAGAATTGTGTGTCTTCC
ATTTGTTGCGTGCTATCGAGAAGGTCTtccaaaacatcatttgaaTCTTG
TCCAGCATCGTTAGCTAAATGATTGCTCTCGGTCATCTGGTGCATATCAG
CTGACTCAGCACTTTTGGTGTCTTGCTCAGAGATGAGATATGGTAACAAA
CATTGGTGACATTCAGTTTTCAGTTGTGAACACATCATTTCCGTACGTGC
ATTATTACGAAAAACACGTTGATATTGGCACACATTGATATGAGCTCTAC
AACTTGGACACATTTCAGCCAGAAGATCTTGACCATCatctaaaacttca
aacttctGCGCATGCGTACTTTGATTGAAGGTGAGTGCGAGTAGAACCAC
AAGCAAAACGATGTCGTTAGCTCTATTCATGTCGATGAGCTTAATGTGAA
AATAGTGTTAGTAGATTTTGTGATATTCTGTATTTTCGTTCAGTCTTTTT
CAGATTCTTgcagtatttttca Coding sequence (CDS) from alignment at scaffold_15:493079..494000 >TCONS_00049064 ID=TCONS_00049064|Name=TCONS_00049064|organism=Clytia hemisphaerica|type=CDS|length=543bp|location=Sequence derived from alignment at scaffold_15:493079..494000 (Clytia hemisphaerica)
ttaaacaagTTTTAAGCATCCTTTACAATTAGCCTTTTGTTTGCATCGTA
ATAATTTCATATAATTGTCAATTTTAGCATGGTTATCACACATGTGTCGT
GCGGCTTCACACGTAAGCGCACAACCACGTTTGCTTCGTGTTGATGAGAA
TTGTGTGTCTTCCATTTGTTGCGTGCTATCGAGAAGGTCTtccaaaacat
catttgaaTCTTGTCCAGCATCGTTAGCTAAATGATTGCTCTCGGTCATC
TGGTGCATATCAGCTGACTCAGCACTTTTGGTGTCTTGCTCAGAGATGAG
ATATGGTAACAAACATTGGTGACATTCAGTTTTCAGTTGTGAACACATCA
TTTCCGTACGTGCATTATTACGAAAAACACGTTGATATTGGCACACATTG
ATATGAGCTCTACAACTTGGACACATTTCAGCCAGAAGATCTTGACCATC
atctaaaacttcaaacttctGCGCATGCGTACTTTGATTGAAGGTGAGTG
CGAGTAGAACCACAAGCAAAACGATGTCGTTAGCTCTATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049064-exon-scaffold_15-1491911889:493079..494000 | TCONS_00049064-exon-scaffold_15-1491911889:493079..494000 | Clytia hemisphaerica | exon |
| TCONS_00049064-exon-scaffold_15-1510915933:493079..494000 | TCONS_00049064-exon-scaffold_15-1510915933:493079..494000 | Clytia hemisphaerica | exon |
| TCONS_00049064-exon-scaffold_15-1575043694:493079..494000 | TCONS_00049064-exon-scaffold_15-1575043694:493079..494000 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:493079..494000 . |
Blast
The following BLAST results are available for this feature:
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