TCONS_00049059 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049059
Unique NameTCONS_00049059
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length602

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049059 ID=TCONS_00049059|Name=TCONS_00049059|organism=Clytia hemisphaerica|type=transcript|length=602bp
CGGACacataattattaaaaagatcATATTCGTTTTAatgcaataaataa
aaaatcgagttatGTGGTTGAAATAACAagtattttcccaaaattttcat
GCTCACGCCCATAAATTTCATCCCAATTCTTTTTCTTGCTCAAAAAGGAG
AAGAGGaaaaaatttacataattttcaTACTGAAAAAGCTACAGCAAAAA
ATCGAGGATAATTTTTTCAGGGAATTAATGTTATTTTAAAAGTTAACCGG
AAAAATTGTCTAAACACAAAAAACACTAGTCAAACGGTACAGAATTCTAT
TGAAACACCTGTGTCAAATACctgctgggaccccagccccactggaaaat
ttgacaaaaagttcgtccccggtgggaaaaatacctaTTTTCCATTGACT
TTGATTACACCCCTCTAgaaattcaaagtttaaaagttgCACTCCAAAAA
CATCCTCACTGgaatttttaaacttgaaaatccTATTTAGGGGGTGTTCC
TGAAAAAGTACCCAATTGGGCTACTTATTGGGCTACCCatttaatttaca
gaccagaattaaaTAATCGAAAATCTTTGGAGGAAAGTCATCTGCTAAGC
TA
Run BLAST on NCBI

transcript from alignment at scaffold_15:306914..307515

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049059 ID=TCONS_00049059|Name=TCONS_00049059|organism=Clytia hemisphaerica|type=transcript|length=602bp|location=Sequence derived from alignment at scaffold_15:306914..307515 (Clytia hemisphaerica)
TAGCTTAGCAGATGACTTTCCTCCAAAGATTTTCGATTAtttaattctgg
tctgtaaattaaatGGGTAGCCCAATAAGTAGCCCAATTGGGTACTTTTT
CAGGAACACCCCCTAAATAggattttcaagtttaaaaattcCAGTGAGGA
TGTTTTTGGAGTGcaacttttaaactttgaatttcTAGAGGGGTGTAATC
AAAGTCAATGGAAAAtaggtatttttcccaccggggacgaactttttgtc
aaattttccagtggggctggggtcccagcagGTATTTGACACAGGTGTTT
CAATAGAATTCTGTACCGTTTGACTAGTGTTTTTTGTGTTTAGACAATTT
TTCCGGTTAACTTTTAAAATAACATTAATTCCCTGAAAAAATTATCCTCG
ATTTTTTGCTGTAGCTTTTTCAGTAtgaaaattatgtaaattttttCCTC
TTCTCCTTTTTGAGCAAGAAAAAGAATTGGGATGAAATTTATGGGCGTGA
GCatgaaaattttgggaaaatactTGTTATTTCAACCACataactcgatt
ttttatttattgcatTAAAACGAATATgatctttttaataattatgtGTC
CG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031169XLOC_031169Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049059-exon-scaffold_15-1491911889:306914..307515TCONS_00049059-exon-scaffold_15-1491911889:306914..307515Clytia hemisphaericaexon
TCONS_00049059-exon-scaffold_15-1510915933:306914..307515TCONS_00049059-exon-scaffold_15-1510915933:306914..307515Clytia hemisphaericaexon
TCONS_00049059-exon-scaffold_15-1575043694:306914..307515TCONS_00049059-exon-scaffold_15-1575043694:306914..307515Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:306914..307515 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.204426	0.0999995	0.12174	0	0	0	0	0	0	0.0601221	0.0600385	0.188371	0	0	0.271074	0.0694605	0	0	0.698257	1.2772	0.31052	0.658717	0.387693	0.259505	0	0	0	0.102085
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049059 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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