TCONS_00049057 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049057
Unique NameTCONS_00049057
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length329

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049057 ID=TCONS_00049057|Name=TCONS_00049057|organism=Clytia hemisphaerica|type=transcript|length=329bp
CAGTAGTCAGACTTTCAATGGCTTTATCATACGTATTCTTTCGCTCGTTG
CTTAGTCCTCGAAAATACCATTTTGGTCTTCGTCTCAAACGGGTTGGTAG
TAGAATCAGCTTCTGGTTGTCACTCAATTCAGCAACGGAAGACAGTTCAT
TAAAATCAGCTAAGAAAGATCTAAAAGTCTTATCATACTCATCGAAAATT
GGAAAGTCATCGTGGTCAACGTTTAGGTGATTCATATGATCTCAATACAA
ATCGTTTGTACGATAAACATCAATGTGATTGGCTCATAAACAAAAGAGGA
GCAGTCGTGGACGTTTTCAATAGTCACAT
Run BLAST on NCBI

transcript from alignment at scaffold_15:283046..283374

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049057 ID=TCONS_00049057|Name=TCONS_00049057|organism=Clytia hemisphaerica|type=transcript|length=329bp|location=Sequence derived from alignment at scaffold_15:283046..283374 (Clytia hemisphaerica)
ATGTGACTATTGAAAACGTCCACGACTGCTCCTCTTTTGTTTATGAGCCA
ATCACATTGATGTTTATCGTACAAACGATTTGTATTGAGATCATATGAAT
CACCTAAACGTTGACCACGATGACTTTCCAATTTTCGATGAGTATGATAA
GACTTTTAGATCTTTCTTAGCTGATTTTAATGAACTGTCTTCCGTTGCTG
AATTGAGTGACAACCAGAAGCTGATTCTACTACCAACCCGTTTGAGACGA
AGACCAAAATGGTATTTTCGAGGACTAAGCAACGAGCGAAAGAATACGTA
TGATAAAGCCATTGAAAGTCTGACTACTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031167XLOC_031167Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049057-exon-scaffold_15-1491911889:283046..283374TCONS_00049057-exon-scaffold_15-1491911889:283046..283374Clytia hemisphaericaexon
TCONS_00049057-exon-scaffold_15-1510915933:283046..283374TCONS_00049057-exon-scaffold_15-1510915933:283046..283374Clytia hemisphaericaexon
TCONS_00049057-exon-scaffold_15-1575043694:283046..283374TCONS_00049057-exon-scaffold_15-1575043694:283046..283374Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:283046..283374 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0902382	0.654973	3.91302	1.19762	3.38047	3.07536	2.37031	2.06285	2.08149	1.64407	6.49886	9.71814	18.0926	27.5607	20.626	19.1602	1.56567	1.99483	21.7988	19.6213	25.0086	28.9787	1.75438	0	5.21247	2.77186	0.328134	0.460562
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049057 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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