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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049031 ID=TCONS_00049031|Name=TCONS_00049031|organism=Clytia hemisphaerica|type=transcript|length=725bp
TTTATGTGGATATTCTACCTCCATTGTCGAGTGGAGGTATTACAAAGAAT
ATCGAAAGCTGATCAGACAGAACCAATCTGTAAAAATGACGGCTCATCTC
AGAGCATTCGTGTTCATCACAGCTCTAGCTTTAGCAGCAGTGCAAACAAA
TGGACAAAGCTGTGATTTGGATTTGGGTTTTATCATCCATGCATGTCAAG
GTTTGCCAAGTGAAGCTACTGATTTCAACGAATCTATCGAATTCATGAGA
TCTGTTACGAAAAGTTTCACCATTGGTTTTGATCGTACTCGAGTTGCCTT
GATAGCATCGTGTTATTCAACAAACCGAGTTGAATTTGATTTGGGGGATG
GCACAAGTAAAGATCAAGTGCTTTTTGATAATACACTCAGACAAATGTTA
CAGGAGAAAGGAAACTCGTCAAACTTTCGTTTGGCAATAGCTCCAGCATT
TATATATGCAAGGAGGAATATATTTGACCAGCGTTATGGAGACCGCAGAG
AAAAGCGCAATGTGCTGATTATTCTTATGAACCGAGCGATTCGCGACATG
AGTTACGTCAGATATGCAACAGACTTTCTCTCCAGTCCTTCCCAAGAAGA
TATTAACGTCATTGCAGTTGGTGTAAATGGTGGTACTAGACGAACAGAAT
TGGAAGTCATGGCTGGCAACAAACCTGAGAATGTTTTCCAAGTTTCTGAT
CCGTCACAATTGAGTTCGATTGCTA Run BLAST on NCBI protein sequence of TCONS_00049031-protein >TCONS_00049031-protein ID=TCONS_00049031-protein|Name=TCONS_00049031-protein|organism=Clytia hemisphaerica|type=polypeptide|length=241bp
LCGYSTSIVEWRYYKEYRKLIRQNQSVKMTAHLRAFVFITALALAAVQTN
GQSCDLDLGFIIHACQGLPSEATDFNESIEFMRSVTKSFTIGFDRTRVAL
IASCYSTNRVEFDLGDGTSKDQVLFDNTLRQMLQEKGNSSNFRLAIAPAF
IYARRNIFDQRYGDRREKRNVLIILMNRAIRDMSYVRYATDFLSSPSQED
INVIAVGVNGGTRRTELEVMAGNKPENVFQVSDPSQLSSIA Run BLAST on NCBI transcript from alignment at scaffold_15:475441..478040- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049031 ID=TCONS_00049031|Name=TCONS_00049031|organism=Clytia hemisphaerica|type=transcript|length=2600bp|location=Sequence derived from alignment at scaffold_15:475441..478040- (Clytia hemisphaerica)
TTTATGTGGATATTCTACCTCCATTGTCGAGTGGAGGTATTACAAAGAAT
ATCGAAAGCTGATCAGACAGAACCAATCTGTAAAAATGACGGCTCATCTC
AGAGCATTCGTGTTCATCACAGGTTAGTAAAATCTTACATTCTTAGAAAA
ATAGTGCTTAATCTTGGTCCAAAACAAACTATTTTTTTTGTAGGTTTCAG
ATAAAAGCTTGAAATTATATTATTTTCCTACATAACTTTAATGTTTGCCA
TCTAGCATATTCTAAATTACCTTAAATATCTTTTCAACGCAATTGAGGTT
AAATAGGTGATGAAAGTTCATCTTACTGAGATTCCCAGCGGGGTACAAGG
GTTTCGAGTAAACAGGCATACTCCGGCCGATTTTCAACCCCTGACCCTTA
ATGGGACTAAAAAGGAGGCGATCCTCATTTGGATTATTTTAGCGAAATTT
TGATCTTTTTGGTGCTAAAAGTTGAAATTTCCCTATTTACTGACCATTAG
AAGGAGGACGGAGGTTGAATTTTTTGATTTTCTTTAAACTCTTGAAGCGA
CTTTTATGTGCCATAAAGGTACCCTTAAGCGCGACACACACCCGTACCAT
TCACATGCTTAGGTACCCCATTAATTAGAAAATAACATGATGATGTGAGA
AAACTTCCAAAAAGATATGTTACTAAACTAAATGGTTGGAGAGGCTACAA
GTTCCTTAGACTATGCTATAGTCTAAGACAAAAGAAATAAGCCCAAAGCC
GAAAAAAAACGCAAATAAAAGGGTTTTTTGCCAAAAAGAGTTTATAGTCG
GTAGAGTTTGCCATCATCTTCTTCGAATTTCTCACTTCAATTTTTCCCCT
TAAATTTTTTTCAGCTCTAGCTTTAGCAGCAGTGCAAACAAATGGACAAA
GCTGTGATTTGGATTTGGGTTTTATCATCCATGCATGTCAAGGTTTGCCA
AGTGAAGCTACTGATTTCAACGAATCTATCGAATTCATGAGATCTGTTAC
GAAAAGTTTCACCATTGGTTTTGATCGTACTCGAGTTGCCTTGATAGCAT
CGTGTTATTCAACAAACCGAGTTGAATTTGATTTGGGGGATGGCACAAGT
AAAGATCAAGTGCTTTTTGATAATACACTCAGACAAATGTTACAGGAGAA
AGGTGAAATTTTTTCTACGCTTACATGCTTTTTTCAGCTTCCAGGAAAAT
GCTGATTTCGAATTCATTCAAAAGTTAAGAAGCCACTACAGTAAAGGAAG
CCAGTACAGGAAGCATCAATATTTCAGTCTGAAAATCACGAAAAGATAAC
AAAGCCGAGCTTTTTCAACATCAGCATCATGATAAATTTCTACCGTTTCT
AAGACTTTGAACATGATAGACCGATTCATTAACCTCTAACGGAAGGTTGG
TTTTAGGTCGATGACTCCTTTTTGTCACTGCTTTTACTAATGAAACGATG
GTATAGCAGGTGTCAAATAAAAGGTGTCAAATTTTGTAGAAACCCACCGA
ATAAAATTTAAAGTATTGAGAATTATTATGAACTAGCGGTACCAGGCCGT
CGTTATCAAATTTTGTGAAAACCAAAGTAATTAAAATGTTGAGATTATGA
ATTTCAAGAGTTTTTGAATTCGAAGAAAGGCATACATTTTAGACATTCAT
TAACCAATTCTTCTCTCTAGGAAACTCGTCAAACTTTCGTTTGGCAATAG
CTCCAGCATTTATATATGCAAGGAGGAATATATTTGACCAGCGTTATGGA
GACCGCAGAGAAAAGCGCAATGTAAGTTGATGCCACCACGAGGATATTCA
AATTTGTTTGAGAGAAAAGTGATTAAAACTGTCGGACTTTCAGCGTGTCC
GGAAAAAGACGGAACAGAATTTTTTATAAATGTTAACTTATGTTCTATAA
GTTGTTCCCCTAACTTTTTAATTAAGTCTCTTTAACTCGAACCTCTATAA
CTCGGAATTTCTCCTTAACTAGAACAAGTTTTCTCGTTCCTACAGTTAAC
AATGTCTCACAGACCAATATTTGACTCTAAACTTCCATAATTCTAACAAG
TATTCCCCGTGCGTTAAGACATAAAAAGCACGCTCCACCGAAGTATCTTT
TAACGTAAGCCACCGTAACGAAGTGGTAGAGCACCCGTCTACGGTGTGCA
AGGTTGTGGGTTCAAACCTCAGCCGGTTTATACCAAAGATTACCAAAATG
GTACTTGATGCCTCTCTGCTTGATGCTCAGAAATTAAGAAAAGGATCAAA
GGTAAGTGGAGCAACCCAGTGAGAAAGAGTGACGCCCCCCTCTACCTTCG
GGTAGATAGCTATCGAAAGAGCAGCCTGGGCCACCTCCGACTGCGGTCAC
AGACTTACTTATTTTTTACCCTGTTCCTTCATACAGGTGCTGATTATTCT
TATGAACCGAGCGATTCGCGACATGAGTTACGTCAGATATGCAACAGACT
TTCTCTCCAGTCCTTCCCAAGAAGATATTAACGTCATTGCAGTTGGTGTA
AATGGTGGTACTAGACGAACAGAATTGGAAGTCATGGCTGGCAACAAACC
TGAGAATGTTTTCCAAGTTTCTGATCCGTCACAATTGAGTTCGATTGCTA
Coding sequence (CDS) from alignment at scaffold_15:475441..478040- >TCONS_00049031 ID=TCONS_00049031|Name=TCONS_00049031|organism=Clytia hemisphaerica|type=CDS|length=2892bp|location=Sequence derived from alignment at scaffold_15:475441..478040- (Clytia hemisphaerica)
GTGCTGATTATTCTTATGAACCGAGCGATTCGCGACATGAGTTACGTCAG
ATATGCAACAGACTTTCTCTCCAGTCCTTCCCAAGAAGATATTAACGTCA
TTGCAGTTGGTGTAAATGGTGGTACTAGACGAACAGAATTGGAAGTCATG
GCTGGCAACAAACCTGAGAATGTTTTCCAAGTTTCTGATCCGTCACAATT
GAGTTCGATTGCTGAAACTCGTCAAACTTTCGTTTGGCAATAGCTCCAGC
ATTTATATATGCAAGGAGGAATATATTTGACCAGCGTTATGGAGACCGCA
GAGAAAAGCGCAATCTCTAGCTTTAGCAGCAGTGCAAACAAATGGACAAA
GCTGTGATTTGGATTTGGGTTTTATCATCCATGCATGTCAAGGTTTGCCA
AGTGAAGCTACTGATTTCAACGAATCTATCGAATTCATGAGATCTGTTAC
GAAAAGTTTCACCATTGGTTTTGATCGTACTCGAGTTGCCTTGATAGCAT
CGTGTTATTCAACAAACCGAGTTGAATTTGATTTGGGGGATGGCACAAGT
AAAGATCAAGTGCTTTTTGATAATACACTCAGACAAATGTTACAGGAGAA
AGTTATGTGGATATTCTACCTCCATTGTCGAGTGGAGGTATTACAAAGAA
TATCGAAAGCTGATCAGACAGAACCAATCTGTAAAAATGACGGCTCATCT
CAGAGCATTCGTGTTCATCACAGGTGCTGATTATTCTTATGAACCGAGCG
ATTCGCGACATGAGTTACGTCAGATATGCAACAGACTTTCTCTCCAGTCC
TTCCCAAGAAGATATTAACGTCATTGCAGTTGGTGTAAATGGTGGTACTA
GACGAACAGAATTGGAAGTCATGGCTGGCAACAAACCTGAGAATGTTTTC
CAAGTTTCTGATCCGTCACAATTGAGTTCGATTGCTGAAACTCGTCAAAC
TTTCGTTTGGCAATAGCTCCAGCATTTATATATGCAAGGAGGAATATATT
TGACCAGCGTTATGGAGACCGCAGAGAAAAGCGCAATCTCTAGCTTTAGC
AGCAGTGCAAACAAATGGACAAAGCTGTGATTTGGATTTGGGTTTTATCA
TCCATGCATGTCAAGGTTTGCCAAGTGAAGCTACTGATTTCAACGAATCT
ATCGAATTCATGAGATCTGTTACGAAAAGTTTCACCATTGGTTTTGATCG
TACTCGAGTTGCCTTGATAGCATCGTGTTATTCAACAAACCGAGTTGAAT
TTGATTTGGGGGATGGCACAAGTAAAGATCAAGTGCTTTTTGATAATACA
CTCAGACAAATGTTACAGGAGAAAGTTATGTGGATATTCTACCTCCATTG
TCGAGTGGAGGTATTACAAAGAATATCGAAAGCTGATCAGACAGAACCAA
TCTGTAAAAATGACGGCTCATCTCAGAGCATTCGTGTTCATCACAGGTGC
TGATTATTCTTATGAACCGAGCGATTCGCGACATGAGTTACGTCAGATAT
GCAACAGACTTTCTCTCCAGTCCTTCCCAAGAAGATATTAACGTCATTGC
AGTTGGTGTAAATGGTGGTACTAGACGAACAGAATTGGAAGTCATGGCTG
GCAACAAACCTGAGAATGTTTTCCAAGTTTCTGATCCGTCACAATTGAGT
TCGATTGCTGAAACTCGTCAAACTTTCGTTTGGCAATAGCTCCAGCATTT
ATATATGCAAGGAGGAATATATTTGACCAGCGTTATGGAGACCGCAGAGA
AAAGCGCAATCTCTAGCTTTAGCAGCAGTGCAAACAAATGGACAAAGCTG
TGATTTGGATTTGGGTTTTATCATCCATGCATGTCAAGGTTTGCCAAGTG
AAGCTACTGATTTCAACGAATCTATCGAATTCATGAGATCTGTTACGAAA
AGTTTCACCATTGGTTTTGATCGTACTCGAGTTGCCTTGATAGCATCGTG
TTATTCAACAAACCGAGTTGAATTTGATTTGGGGGATGGCACAAGTAAAG
ATCAAGTGCTTTTTGATAATACACTCAGACAAATGTTACAGGAGAAAGTT
ATGTGGATATTCTACCTCCATTGTCGAGTGGAGGTATTACAAAGAATATC
GAAAGCTGATCAGACAGAACCAATCTGTAAAAATGACGGCTCATCTCAGA
GCATTCGTGTTCATCACAGGTGCTGATTATTCTTATGAACCGAGCGATTC
GCGACATGAGTTACGTCAGATATGCAACAGACTTTCTCTCCAGTCCTTCC
CAAGAAGATATTAACGTCATTGCAGTTGGTGTAAATGGTGGTACTAGACG
AACAGAATTGGAAGTCATGGCTGGCAACAAACCTGAGAATGTTTTCCAAG
TTTCTGATCCGTCACAATTGAGTTCGATTGCTGAAACTCGTCAAACTTTC
GTTTGGCAATAGCTCCAGCATTTATATATGCAAGGAGGAATATATTTGAC
CAGCGTTATGGAGACCGCAGAGAAAAGCGCAATCTCTAGCTTTAGCAGCA
GTGCAAACAAATGGACAAAGCTGTGATTTGGATTTGGGTTTTATCATCCA
TGCATGTCAAGGTTTGCCAAGTGAAGCTACTGATTTCAACGAATCTATCG
AATTCATGAGATCTGTTACGAAAAGTTTCACCATTGGTTTTGATCGTACT
CGAGTTGCCTTGATAGCATCGTGTTATTCAACAAACCGAGTTGAATTTGA
TTTGGGGGATGGCACAAGTAAAGATCAAGTGCTTTTTGATAATACACTCA
GACAAATGTTACAGGAGAAAGTTATGTGGATATTCTACCTCCATTGTCGA
GTGGAGGTATTACAAAGAATATCGAAAGCTGATCAGACAGAACCAATCTG
TAAAAATGACGGCTCATCTCAGAGCATTCGTGTTCATCACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049031-exon-scaffold_15-1575043694:477919..478040 | TCONS_00049031-exon-scaffold_15-1575043694:477919..478040 | Clytia hemisphaerica | exon |
| TCONS_00049031-exon-scaffold_15-1575043694:476889..477176 | TCONS_00049031-exon-scaffold_15-1575043694:476889..477176 | Clytia hemisphaerica | exon |
| TCONS_00049031-exon-scaffold_15-1575043694:476270..476370 | TCONS_00049031-exon-scaffold_15-1575043694:476270..476370 | Clytia hemisphaerica | exon |
| TCONS_00049031-exon-scaffold_15-1575043694:475441..475654 | TCONS_00049031-exon-scaffold_15-1575043694:475441..475654 | Clytia hemisphaerica | exon |
| TCONS_00049031-exon-scaffold_15-1510915933:477919..478040 | TCONS_00049031-exon-scaffold_15-1510915933:477919..478040 | Clytia hemisphaerica | exon |
| TCONS_00049031-exon-scaffold_15-1510915933:476889..477176 | TCONS_00049031-exon-scaffold_15-1510915933:476889..477176 | Clytia hemisphaerica | exon |
| TCONS_00049031-exon-scaffold_15-1510915933:476270..476370 | TCONS_00049031-exon-scaffold_15-1510915933:476270..476370 | Clytia hemisphaerica | exon |
| TCONS_00049031-exon-scaffold_15-1510915933:475441..475654 | TCONS_00049031-exon-scaffold_15-1510915933:475441..475654 | Clytia hemisphaerica | exon |
| TCONS_00049031-exon-scaffold_15-1491911889:477919..478040 | TCONS_00049031-exon-scaffold_15-1491911889:477919..478040 | Clytia hemisphaerica | exon |
| TCONS_00049031-exon-scaffold_15-1491911889:476889..477176 | TCONS_00049031-exon-scaffold_15-1491911889:476889..477176 | Clytia hemisphaerica | exon |
| TCONS_00049031-exon-scaffold_15-1491911889:476270..476370 | TCONS_00049031-exon-scaffold_15-1491911889:476270..476370 | Clytia hemisphaerica | exon |
| TCONS_00049031-exon-scaffold_15-1491911889:475441..475654 | TCONS_00049031-exon-scaffold_15-1491911889:475441..475654 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:475441..478040 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002035 | VWF_A |
Blast
The following BLAST results are available for this feature:
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