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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049022 ID=TCONS_00049022|Name=TCONS_00049022|organism=Clytia hemisphaerica|type=transcript|length=460bp
CGATTTTGGGAGGATATTGGCCTTGTTTGAAATCAGAAGATTCCTTGGGA
ATGAGACTGAACACACTTTATCGATGCTAGCTGTCAGAATTATAAGTTGA
ACTATAATCGACCCAGTTTCAACAACCTTTCATTTATAGAATTTAAAtcc
aaaattaacaaaatgaatCTTTACATTTGGGCATGCGCAATAGTTCTAGT
AGTGATTAACTTACACGTGGAACGGACAGAGGCGGTGGCATCAGCAGGAA
GTCTGGTATGGACAAAGAGAGATGCTCAACAAGATACCACAAGAATCAAT
CGATTGTTAGATGATGTTGCACGGACGAAAAGGATTCTGACACTTTACCG
CATTCTACAAAAACGTGCAGACTTGAAGAGGAAAAGAAGCTTGCTGTCCG
ATactgattattttcaaaaataaatattttttaaaacaaacaaatagttt
ttgtttttcc Run BLAST on NCBI transcript from alignment at scaffold_15:308156..310273- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049022 ID=TCONS_00049022|Name=TCONS_00049022|organism=Clytia hemisphaerica|type=transcript|length=2118bp|location=Sequence derived from alignment at scaffold_15:308156..310273- (Clytia hemisphaerica)
CGATTTTGGGAGGATATTGGCCTTGTTTGAAATCAGAAGATTCCTTGGGA
ATGAGACTGAACACACTTTATCGATGCTAGCTGTCAGAATTATAAGTTGA
ACTATAATCGACCCAGTTTCAACAACCTTTCATTTATAGAATTTAAATCC
AAAATTAACAAAATGAATCTTTACATTTGGGCATGCGCAATAGTTCTAGT
AGTGATTAACTTACACGTGGAACGGACAGAGGCGGTGGCATCAGCAGGAA
GTCTGGTATGGACAAAGAGAGATGCTCAACAAGATACCACAAGAATCAAT
CGATTGTTAGATGATGTTGCACGGACGAAAAGGATTCTGGTATGGCATCA
TTTTATAAATTTTCCAAGCAGATTCTGATTTCCCGCACAATGCACGCATT
CATTCTTAACGTCATGACTTAAGGTCGTGAGAGAATATTCCCTTTGATTA
TAGGGAATACCTTATCGGGGAAAAGTGACGACATTTTGGACAAGTCACGA
ATTCTTCCCCGATGAAAATTTTCCCCGACGAAGTTTTCCCCGATAAGGTA
TTAGAAAAGCTTTGGAGGGCGGTGATTGGCTGAAGTAAAAACAATCGTAC
CGAAATTAACCGTCAATAATAGACATTGTTTATTATACGCCTTTTCGACC
GTAGCCGCCAATTGCTGCACGCAGGTATTTTTTGTCCGTTTTACCACCCG
AAAACCGCCCCAGTCTTTTTTTCGGAGCTATAGACAATAGAAAAAGGTGT
TAAAAAAGATTGTATCGAGTTTAGTGGGATAATTAAATAATAAAGTGGCA
CGCCCCTAACCGCGCGACTACGGTCGAAAAAGTGTATTGACGTTGGATTT
TGGGGATGCTAAAAGAATCTCTATTTTTAACATCCCCTGCTATCACAAGA
CATCGAATTTATGTCAATAAGATACAAATAACGTGGAAAGAACGTCGAAA
CGACGTCGTATGCCAGCTTAGTATATAGATATAAACTTCATCAGGTGTGA
CCCTCGTTTAATGCAGCACTCGATAATAATGCAGATCGATAATAATGCAG
ATCGATAATAACGCGACGAAGCTGTCGCAAATGATTTTAGTATTTTCTTT
CCAAGGTCTGCTTCCACAAGAAGCTGCTCCTCCTTAAATAGAGCCTTGAT
TGAATTTGGGCTGAGGATAGACTATAAAGTTCTTGAAAGGCAATCTCAGA
TTTAAAAGATTGAAAAATTGTGTCTTCAATTAATTAAATAAATTTCTGGT
ACCCCTTCCCCTTCAAGAAAGACTTTACACTTGACACCCTGANCCCCTTC
AAGAAAGACTTCACACTTGACACCCTGAAAAAACGCCACTGATACACCCC
CTTCTCAGAAACACGGTGGGACTCCTCTTGCTGGAAAGATAGGCCAAAAT
ATCGTGAAGAAATTACACTCCAATTTTCTCCCCATCAAATAAACAAATCC
TCAGACCAATATATTTTACTATTTTTTCCATCACCACTAAATCTTTTGAC
TTGAAAACAACGGAATTCAAACAAATCTCCGGCCAAAAGTTTCAGTTTGT
TATTTTTATCTTCACTTGCTAAAAATATCTTACCGGTATCTGTGTGCCAG
GGGGTATACTAACCGGAGATCAGATTGTGATTATTTTCTGCCCACCAGCG
CTAAAGATGTAAAGAGATGGGTGAAAACATAACAATCTCACAAATATCTC
AAATCGTGAGGACCGCGCTTGTCTAAAAGGACTGGGAACGACAACAAAGT
TGCGCGATTGTGTCTATGAATAGGGCGTCATATCAGGAAAATTTAGTTTT
TGACTTTCCGGTGCACAACAAGAATCTTGTTGTAGATTTTCCGTGGGAAG
ACTATTTTCCTCAGATGGTTAATTTATAATAAGCCTTCAGAGGTTTACCG
TGCCCGTAAGAAAATTATGACTAGCTCTTATCAGGTTAGGGCAAATGTAC
TGATTGAGTTCTCATACCAATACTGTATTTTTCTTTCACTTTTTCAGACA
CTTTACCGCATTCTACAAAAACGTGCAGACTTGAAGAGGAAAAGAAGCTT
GCTGTCCGATACTGATTATTTTCAAAAATAAATATTTTTTAAAACAAACA
AATAGTTTTTGTTTTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049022-exon-scaffold_15-1575043694:309935..310273 | TCONS_00049022-exon-scaffold_15-1575043694:309935..310273 | Clytia hemisphaerica | exon |
| TCONS_00049022-exon-scaffold_15-1575043694:308156..308276 | TCONS_00049022-exon-scaffold_15-1575043694:308156..308276 | Clytia hemisphaerica | exon |
| TCONS_00049022-exon-scaffold_15-1510915933:309935..310273 | TCONS_00049022-exon-scaffold_15-1510915933:309935..310273 | Clytia hemisphaerica | exon |
| TCONS_00049022-exon-scaffold_15-1510915933:308156..308276 | TCONS_00049022-exon-scaffold_15-1510915933:308156..308276 | Clytia hemisphaerica | exon |
| TCONS_00049022-exon-scaffold_15-1491911889:309935..310273 | TCONS_00049022-exon-scaffold_15-1491911889:309935..310273 | Clytia hemisphaerica | exon |
| TCONS_00049022-exon-scaffold_15-1491911889:308156..308276 | TCONS_00049022-exon-scaffold_15-1491911889:308156..308276 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:308156..310273 - |
Blast
The following BLAST results are available for this feature:
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