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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048997 ID=TCONS_00048997|Name=TCONS_00048997|organism=Clytia hemisphaerica|type=transcript|length=1838bp
GTTCCGCGTACGTTTCTGTGAAAAACTTATTGTTCTTTAAGAACAATAGC
TAGAACAATTGATtattgttttgttgattttctttaaaCAATGGTTATAT
TAACAACTTCCTCTTTATTGTAGGGTTTAATGAGACCCAATTAGACAGGA
AAACATTTTAAGTAATTACAACAAGCGTTTTAATAGATATTTGAACTCTT
CTCTTTCTAATTGGCGTATATAAAAGAGCGTGGTCCATCATTTTCTGTCA
ATCTCAGAAAAAGCATCATATTGATTAAGACATGAACTAGTGTAGATGCA
ACAAACTGGTTCACATTATTtgcgaaaaattgattttgtattttatttgg
tGTTTCACGTAGTAACTAAAGCATAAAGCAGCAATAATAAATTAAACAAC
AGAATTTGTTTGTCCATTCTTGTGCTGGaaagaagatttatttttcattt
gaattGATTGGATGTTGAGCAGGAGAGTGAATACACAATAAAATCATGCA
GAATTTAGCATTACCAGATTTAAGAAGACAAATATTGGAAGATGTCCTTG
GCGATAGCGTGGAAGAATACGAGAATTTCAACAAGGAAGAGGCTGAAAGT
AAAAGACAACATCGTCAGCGTATCCCATTatggcaattcttattacatcT
ACTGAACCGAGACACAAACGAAAGATACATTCAGTGGAGTAAGGAATACG
AATTGGAGTTCCGGATCAAAGATACAGTCGGAGTAGCGGAACTATGGGGT
TCCGTAAAGAATAAAACCGACATGACTTATGAGAAACTTGGAAGAGCAAT
GCGATATTATTATGGGAAGAGCATCATTGAAAAGGTAACTGGAAGACGTT
ATTCGTACAGATTTATCCTGTCAAGGCGAACAAAGAAATACTTATCACAG
TTCATTAACGTCACTCAAATGACTATTCAACCGGCATCCGAATCTGATCA
CGAGATCAACGAAGATAACGCAATGTCACCACGCATGGCagatgaaaata
acaacaaacgCCGAAAGACCGTTAGTGTTAGTAGCCCACCTCCTCGTGAG
CGTACACAGAAAGACTATCGTACAGAATATAGTAGAAGTCCATCTTCGCA
ATTGAGTTGTCCAACTGCTATcactaaaacaaaaatttttcgtcCAGACG
AAAGTCTTTCTCGATATTTCGCCACCGCAGACCCTTCAATCCCACAAGAA
AAAGTcacgaaagaagaaaaaatctcaaCACCTTTAAAAATCAGAGATAC
TAGAAACTCCATCATTTATCATGATAGCACTCAAAGACGATCAGCATTCT
TTGTTCCAGAGAAATCGGTAAGCATTACCCGAGAAAATGCACCATCACTT
ATCCAAGCTCTTCAAACCATGCCTTTATCTCCTGTATCTTCAGAAACACA
AGTTACCCGTTCCCCAActtatcaggaaaatcgaaaacgCTCTTATCCGT
ACCCGACTAAATCGAGTATACGTGAGAAGAACGCTATTGCTTATTGCTGT
TGCGGATCACACAATTGTAAAATCAAATACGTTGATTATGCTAGTGAAGA
AAGCGAATGTGAATCATCTTATTCTCGTGAAAGCATTTCCCCAATCGCTG
TTATGGAAAAACCGAAAAAAACGACTGCATCGATGATGAATTCGCGAACG
AATTATATCGATTCGTACGGTTTACACGATTTTCATGAGGAATCGATTCG
TAAAGAACTGAGAGAATTAAAAGATTACAGAGAACGTGAAAAGAATGAAA
TTATGATTATGAAACAATCTTTAGGTGGTTCAAAACTGGATCCATTCATG
GGGTACAAGGACGCAGGACCACTCATGGATGATTTTTT Run BLAST on NCBI protein sequence of TCONS_00048997-protein >TCONS_00048997-protein ID=TCONS_00048997-protein|Name=TCONS_00048997-protein|organism=Clytia hemisphaerica|type=polypeptide|length=447bp
MQNLALPDLRRQILEDVLGDSVEEYENFNKEEAESKRQHRQRIPLWQFLL
HLLNRDTNERYIQWSKEYELEFRIKDTVGVAELWGSVKNKTDMTYEKLGR
AMRYYYGKSIIEKVTGRRYSYRFILSRRTKKYLSQFINVTQMTIQPASES
DHEINEDNAMSPRMADENNNKRRKTVSVSSPPPRERTQKDYRTEYSRSPS
SQLSCPTAITKTKIFRPDESLSRYFATADPSIPQEKVTKEEKISTPLKIR
DTRNSIIYHDSTQRRSAFFVPEKSVSITRENAPSLIQALQTMPLSPVSSE
TQVTRSPTYQENRKRSYPYPTKSSIREKNAIAYCCCGSHNCKIKYVDYAS
EESECESSYSRESISPIAVMEKPKKTTASMMNSRTNYIDSYGLHDFHEES
IRKELRELKDYREREKNEIMIMKQSLGGSKLDPFMGYKDAGPLMDDF Run BLAST on NCBI transcript from alignment at scaffold_15:374909..378284+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048997 ID=TCONS_00048997|Name=TCONS_00048997|organism=Clytia hemisphaerica|type=transcript|length=3376bp|location=Sequence derived from alignment at scaffold_15:374909..378284+ (Clytia hemisphaerica)
GTTCCGCGTACGTTTCTGTGAAAAACTTATTGTTCTTTAAGAACAATAGC
TAGAACAATTGATtattgttttgttgattttctttaaaCAATGGTTATAT
TAACAACTTCCTCTTTATTGTAGGGTTTAATGAGACCCAATTAGACAGGA
AAACATTTTAAGTAATTACAACAAGCGTTTTAATAGATATTTGAACTCTT
CTCTTTCTAATTGGCGTATATAAAAGAGCGTGGTCCATCATTTTCTGTCA
ATCTCAGAAAAAGCATCATATTGATTAAGACATGAACTAGTGTAGATGCA
ACAAACTGGTTCACATTATTtgcgaaaaattgattttgtattttatttgg
tGTTTCACGTAGTAACTAAAGCATAAAGCAGCAATAATAAATTAAACAAC
AGAATTTGTTTGTCCATTCTTGTGCTGGaaagaagatttatttttcattt
gaattGATTGGATGTTGAGCAGGAGAGTGAATACACAATAAAATCATGCA
GAATTTAGCATTACCAGATTTAAGAAGACAAATATTGGAAGATGTCCTTG
GCGATAGGTATGtttaaaaattccaaattttaagCACCGGGCCTACAGAG
CCTAAAAAAATTGTACTTTTCAAGAAGAACTCGGGCTTTGCTTCTCTTGT
ATCTGGctttaaaaatcattttcctTGTAAATCTGATATCttgttccaaa
aaaaaaacggtaGATTATCTGTAATCTCGAAcatttccttatttttcttt
tcttttgttgttttcagCGTGGAAGAATACGAGAATTTCAACAAGGAAGA
GGCTGAAAGTAAAAGACGTAAGTAATTTTAATCTTTACATTTTTACGaat
acttgaaaattttgaaagctaAGTCGTTTTTAGAAACACCAAAATTGTTT
TTGGTTTTGCATGTACAAATTGACGCCAGTCAACTGGGATAATTTGCAAT
AAAATAGTTAACAACAAATCAATTCGCAACTCAAATTATGTTATAATGCT
TTCCAATGATTTCCTCTCTATTACATTAATAAGTTCCTTTTAGAgagttg
tcaatttttttcccgCTCTTAATTGTTAGTATGTAGCAATGTCATACAGT
GACAATTctctagaaaaattaaaagattaaaGCCAAATCTCTTTTTTTCC
GTGTTTGCccgaaaaaatttcataaaaatcaaataataagCTCATTTCGA
GGGTCAGTGTTTTCTGAGTATTTAGTTTAAAAGATATTCATATTTTGTTA
ATTTACGtgatttccgccattatggaagcctTCCATAATGGTAATAATTA
CGTaatttaacaaaacatgaaaaatctcTATCAGACACAAAAAGATATTA
GTTAGCGTTCATTAGCGTCTTTTATTTCTTCCATGAAAAGTCCATAGCCC
TTTTTAGCCACGCAAACGCTATTTACCGCTTACTCACTGATAGCCTATAA
AATGCATAATTTCATGACCCATTTAGCCTGCGCTAACCCGGTGGGTAGAC
TGCATGCGGTGTGGGTTAAACGAATCAATTAAAATACCATTGACAACGTG
AGCGGgcgttggaaaatttttgtaaaaaacaatttcaggaaCAAATAACA
AGTCAATTACTGGAATATTAAGTGGGTTTGATTCACTTtaagaagaaaag
ttctttcTGATAGCCTAGCGGTATGGTCTATCTTCCTCCAGTGAAGAAGT
GTCAAGCGTCACGAACCTTTTCTCATTACGCGCCTTGGTGCACCTTCTTT
TATCACCTTTAACCCGATTATGTTTGATCTATACAGAACATCGTCAGCGT
ATCCCATTatggcaattcttattacatcTACTGAACCGAGACACAAACGA
AAGATACATTCAGTGGAGTAAGGAATACGAATTGGAGTTCCGGATCAAAG
ATACAGTCGGAGTAGCGGAACTATGGGGTTCCGTAAAGAATAAAACCGAC
ATGACTTATGAGAAACTTGGAAGAGCAATGCGATATTATTATGGGAAGAG
CATCATTGAAAAGGTGAggagcatacacgttttttaggccttcaggtgtt
cttaactttttgtgttttaagcctaaaaatgttcttatttttaccatttt
gtcagtattttggcccattttctcttaaaagatttttagaGTTTAACCTG
TTCTTGATATtctggccatcgaaaccttattatgttcttatatagtttgt
tgttataataaaaaaatgtgtatttagcTTAAGTCTTAGCATTTTTTTTA
GCCTACGTGTTTTAGAATTTGCTGATATgaaagaggaagaaaaaagattt
tttcaataaatatttCTGAGAAATTTACGTGTGTTTTTCTAAGGTTTTCT
CTATTGATTTTTGCGCATCTAGGTAACTGGAAGACGTTATTCGTACAGAT
TTATCCTGTCAAGGCGAACAAAGAAATACTTATCACAGTTCATTAACGTC
ACTCAAATGACTATTCAACCGGCATCCGAATCTGATCACGAGATCAACGA
AGATAACGCAATGTCACCACGCATGGCagatgaaaataacaacaaacgCC
GAAAGACCGTTAGTGTTAGTAGCCCACCTCCTCGTGAGCGTACACAGAAA
GACTATCGTACAGAATATAGTAGAAGTCCATCTTCGCAATTGAGTTGTCC
AACTGCTATcactaaaacaaaaatttttcgtcCAGACGAAAGTCTTTCTC
GATATTTCGCCACCGCAGACCCTTCAATCCCACAAGAAAAAGTcacgaaa
gaagaaaaaatctcaaCACCTTTAAAAATCAGAGATACTAGAAACTCCAT
CATTTATCATGATAGCACTCAAAGACGATCAGCATTCTTTGTTCCAGAGA
AATCGGTAAGCATTACCCGAGAAAATGCACCATCACTTATCCAAGCTCTT
CAAACCATGCCTTTATCTCCTGTATCTTCAGAAACACAAGTTACCCGTTC
CCCAActtatcaggaaaatcgaaaacgCTCTTATCCGTACCCGACTAAAT
CGAGTATACGTGAGAAGAACGCTATTGCTTATTGCTGTTGCGGATCACAC
AATTGTAAAATCAAATACGTTGATTATGCTAGTGAAGAAAGCGAATGTGA
ATCATCTTATTCTCGTGAAAGCATTTCCCCAATCGCTGTTATGGAAAAAC
CGAAAAAAACGACTGCATCGATGATGAATTCGCGAACGAATTATATCGAT
TCGTACGGTTTACACGATTTTCATGAGGAATCGATTCGTAAAGAACTGAG
AGAATTAAAAGATTACAGAGAACGTGAAAAGAATGAAATTATGATTATGA
AACAATCTTTAGGTGGTTCAAAACTGGATCCATTCATGGGGTACAAGGAC
GCAGGACCACTCATGGATGATTTTTT Coding sequence (CDS) from alignment at scaffold_15:374909..378284+ >TCONS_00048997 ID=TCONS_00048997|Name=TCONS_00048997|organism=Clytia hemisphaerica|type=CDS|length=5364bp|location=Sequence derived from alignment at scaffold_15:374909..378284+ (Clytia hemisphaerica)
ATGCAGAATTTAGCATTACCAGATTTAAGAAGACAAATATTGGAAGATGT
CCTTGGCGATAGCGTGGAAGAATACGAGAATTTCAACAAGGAAGAGGCTG
AAAGTAAAAGACAACATCGTCAGCGTATCCCATTatggcaattcttatta
catcTACTGAACCGAGACACAAACGAAAGATACATTCAGTGGAGTAAGGA
ATACGAATTGGAGTTCCGGATCAAAGATACAGTCGGAGTAGCGGAACTAT
GGGGTTCCGTAAAGAATAAAACCGACATGACTTATGAGAAACTTGGAAGA
GCAATGCGATATTATTATGGGAAGAGCATCATTGAAAAGGTAACTGGAAG
ACGTTATTCGTACAGATTTATCCTGTCAAGGCGAACAAAGAAATACTTAT
CACAGTTCATTAACGTCACTCAAATGACTATTCAACCGGCATCCGAATCT
GATCACGAGATCAACGAAGATAACGCAATGTCACCACGCATGGCagatga
aaataacaacaaacgCCGAAAGACCGTTAGTGTTAGTAGCCCACCTCCTC
GTGAGCGTACACAGAAAGACTATCGTACAGAATATAGTAGAAGTCCATCT
TCGCAATTGAGTTGTCCAACTGCTATcactaaaacaaaaatttttcgtcC
AGACGAAAGTCTTTCTCGATATTTCGCCACCGCAGACCCTTCAATCCCAC
AAGAAAAAGTcacgaaagaagaaaaaatctcaaCACCTTTAAAAATCAGA
GATACTAGAAACTCCATCATTTATCATGATAGCACTCAAAGACGATCAGC
ATTCTTTGTTCCAGAGAAATCGGTAAGCATTACCCGAGAAAATGCACCAT
CACTTATCCAAGCTCTTCAAACCATGCCTTTATCTCCTGTATCTTCAGAA
ACACAAGTTACCCGTTCCCCAActtatcaggaaaatcgaaaacgCTCTTA
TCCGTACCCGACTAAATCGAGTATACGTGAGAAGAACGCTATTGCTTATT
GCTGTTGCGGATCACACAATTGTAAAATCAAATACGTTGATTATGCTAGT
GAAGAAAGCGAATGTGAATCATCTTATTCTCGTGAAAGCATTTCCCCAAT
CGCTGTTATGGAAAAACCGAAAAAAACGACTGCATCGATGATGAATTCGC
GAACGAATTATATCGATTCGTACGGTTTACACGATTTTCATGAGGAATCG
ATTCGTAAAGAACTGAGAGAATTAAAAGATTACAGAGAACGTGAAAAGAA
TGAAATTATGATTATGAAACAATCTTTAGGTGGTTCAAAACTGGATCCAT
TCATGGGGTACAAGGACGCAGGACCACTCATGGATGATTTTATGCAGAAT
TTAGCATTACCAGATTTAAGAAGACAAATATTGGAAGATGTCCTTGGCGA
TAGCGTGGAAGAATACGAGAATTTCAACAAGGAAGAGGCTGAAAGTAAAA
GACAACATCGTCAGCGTATCCCATTatggcaattcttattacatcTACTG
AACCGAGACACAAACGAAAGATACATTCAGTGGAGTAAGGAATACGAATT
GGAGTTCCGGATCAAAGATACAGTCGGAGTAGCGGAACTATGGGGTTCCG
TAAAGAATAAAACCGACATGACTTATGAGAAACTTGGAAGAGCAATGCGA
TATTATTATGGGAAGAGCATCATTGAAAAGGTAACTGGAAGACGTTATTC
GTACAGATTTATCCTGTCAAGGCGAACAAAGAAATACTTATCACAGTTCA
TTAACGTCACTCAAATGACTATTCAACCGGCATCCGAATCTGATCACGAG
ATCAACGAAGATAACGCAATGTCACCACGCATGGCagatgaaaataacaa
caaacgCCGAAAGACCGTTAGTGTTAGTAGCCCACCTCCTCGTGAGCGTA
CACAGAAAGACTATCGTACAGAATATAGTAGAAGTCCATCTTCGCAATTG
AGTTGTCCAACTGCTATcactaaaacaaaaatttttcgtcCAGACGAAAG
TCTTTCTCGATATTTCGCCACCGCAGACCCTTCAATCCCACAAGAAAAAG
TcacgaaagaagaaaaaatctcaaCACCTTTAAAAATCAGAGATACTAGA
AACTCCATCATTTATCATGATAGCACTCAAAGACGATCAGCATTCTTTGT
TCCAGAGAAATCGGTAAGCATTACCCGAGAAAATGCACCATCACTTATCC
AAGCTCTTCAAACCATGCCTTTATCTCCTGTATCTTCAGAAACACAAGTT
ACCCGTTCCCCAActtatcaggaaaatcgaaaacgCTCTTATCCGTACCC
GACTAAATCGAGTATACGTGAGAAGAACGCTATTGCTTATTGCTGTTGCG
GATCACACAATTGTAAAATCAAATACGTTGATTATGCTAGTGAAGAAAGC
GAATGTGAATCATCTTATTCTCGTGAAAGCATTTCCCCAATCGCTGTTAT
GGAAAAACCGAAAAAAACGACTGCATCGATGATGAATTCGCGAACGAATT
ATATCGATTCGTACGGTTTACACGATTTTCATGAGGAATCGATTCGTAAA
GAACTGAGAGAATTAAAAGATTACAGAGAACGTGAAAAGAATGAAATTAT
GATTATGAAACAATCTTTAGGTGGTTCAAAACTGGATCCATTCATGGGGT
ACAAGGACGCAGGACCACTCATGGATGATTTTATGCAGAATTTAGCATTA
CCAGATTTAAGAAGACAAATATTGGAAGATGTCCTTGGCGATAGCGTGGA
AGAATACGAGAATTTCAACAAGGAAGAGGCTGAAAGTAAAAGACAACATC
GTCAGCGTATCCCATTatggcaattcttattacatcTACTGAACCGAGAC
ACAAACGAAAGATACATTCAGTGGAGTAAGGAATACGAATTGGAGTTCCG
GATCAAAGATACAGTCGGAGTAGCGGAACTATGGGGTTCCGTAAAGAATA
AAACCGACATGACTTATGAGAAACTTGGAAGAGCAATGCGATATTATTAT
GGGAAGAGCATCATTGAAAAGGTAACTGGAAGACGTTATTCGTACAGATT
TATCCTGTCAAGGCGAACAAAGAAATACTTATCACAGTTCATTAACGTCA
CTCAAATGACTATTCAACCGGCATCCGAATCTGATCACGAGATCAACGAA
GATAACGCAATGTCACCACGCATGGCagatgaaaataacaacaaacgCCG
AAAGACCGTTAGTGTTAGTAGCCCACCTCCTCGTGAGCGTACACAGAAAG
ACTATCGTACAGAATATAGTAGAAGTCCATCTTCGCAATTGAGTTGTCCA
ACTGCTATcactaaaacaaaaatttttcgtcCAGACGAAAGTCTTTCTCG
ATATTTCGCCACCGCAGACCCTTCAATCCCACAAGAAAAAGTcacgaaag
aagaaaaaatctcaaCACCTTTAAAAATCAGAGATACTAGAAACTCCATC
ATTTATCATGATAGCACTCAAAGACGATCAGCATTCTTTGTTCCAGAGAA
ATCGGTAAGCATTACCCGAGAAAATGCACCATCACTTATCCAAGCTCTTC
AAACCATGCCTTTATCTCCTGTATCTTCAGAAACACAAGTTACCCGTTCC
CCAActtatcaggaaaatcgaaaacgCTCTTATCCGTACCCGACTAAATC
GAGTATACGTGAGAAGAACGCTATTGCTTATTGCTGTTGCGGATCACACA
ATTGTAAAATCAAATACGTTGATTATGCTAGTGAAGAAAGCGAATGTGAA
TCATCTTATTCTCGTGAAAGCATTTCCCCAATCGCTGTTATGGAAAAACC
GAAAAAAACGACTGCATCGATGATGAATTCGCGAACGAATTATATCGATT
CGTACGGTTTACACGATTTTCATGAGGAATCGATTCGTAAAGAACTGAGA
GAATTAAAAGATTACAGAGAACGTGAAAAGAATGAAATTATGATTATGAA
ACAATCTTTAGGTGGTTCAAAACTGGATCCATTCATGGGGTACAAGGACG
CAGGACCACTCATGGATGATTTTATGCAGAATTTAGCATTACCAGATTTA
AGAAGACAAATATTGGAAGATGTCCTTGGCGATAGCGTGGAAGAATACGA
GAATTTCAACAAGGAAGAGGCTGAAAGTAAAAGACAACATCGTCAGCGTA
TCCCATTatggcaattcttattacatcTACTGAACCGAGACACAAACGAA
AGATACATTCAGTGGAGTAAGGAATACGAATTGGAGTTCCGGATCAAAGA
TACAGTCGGAGTAGCGGAACTATGGGGTTCCGTAAAGAATAAAACCGACA
TGACTTATGAGAAACTTGGAAGAGCAATGCGATATTATTATGGGAAGAGC
ATCATTGAAAAGGTAACTGGAAGACGTTATTCGTACAGATTTATCCTGTC
AAGGCGAACAAAGAAATACTTATCACAGTTCATTAACGTCACTCAAATGA
CTATTCAACCGGCATCCGAATCTGATCACGAGATCAACGAAGATAACGCA
ATGTCACCACGCATGGCagatgaaaataacaacaaacgCCGAAAGACCGT
TAGTGTTAGTAGCCCACCTCCTCGTGAGCGTACACAGAAAGACTATCGTA
CAGAATATAGTAGAAGTCCATCTTCGCAATTGAGTTGTCCAACTGCTATc
actaaaacaaaaatttttcgtcCAGACGAAAGTCTTTCTCGATATTTCGC
CACCGCAGACCCTTCAATCCCACAAGAAAAAGTcacgaaagaagaaaaaa
tctcaaCACCTTTAAAAATCAGAGATACTAGAAACTCCATCATTTATCAT
GATAGCACTCAAAGACGATCAGCATTCTTTGTTCCAGAGAAATCGGTAAG
CATTACCCGAGAAAATGCACCATCACTTATCCAAGCTCTTCAAACCATGC
CTTTATCTCCTGTATCTTCAGAAACACAAGTTACCCGTTCCCCAActtat
caggaaaatcgaaaacgCTCTTATCCGTACCCGACTAAATCGAGTATACG
TGAGAAGAACGCTATTGCTTATTGCTGTTGCGGATCACACAATTGTAAAA
TCAAATACGTTGATTATGCTAGTGAAGAAAGCGAATGTGAATCATCTTAT
TCTCGTGAAAGCATTTCCCCAATCGCTGTTATGGAAAAACCGAAAAAAAC
GACTGCATCGATGATGAATTCGCGAACGAATTATATCGATTCGTACGGTT
TACACGATTTTCATGAGGAATCGATTCGTAAAGAACTGAGAGAATTAAAA
GATTACAGAGAACGTGAAAAGAATGAAATTATGATTATGAAACAATCTTT
AGGTGGTTCAAAACTGGATCCATTCATGGGGTACAAGGACGCAGGACCAC
TCATGGATGATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048997-exon-scaffold_15-1491911889:374909..375465 | TCONS_00048997-exon-scaffold_15-1491911889:374909..375465 | Clytia hemisphaerica | exon |
| TCONS_00048997-exon-scaffold_15-1510915933:374909..375465 | TCONS_00048997-exon-scaffold_15-1510915933:374909..375465 | Clytia hemisphaerica | exon |
| TCONS_00048997-exon-scaffold_15-1575043694:374909..375465 | TCONS_00048997-exon-scaffold_15-1575043694:374909..375465 | Clytia hemisphaerica | exon |
| TCONS_00048997-exon-scaffold_15-1491911889:375676..375725 | TCONS_00048997-exon-scaffold_15-1491911889:375676..375725 | Clytia hemisphaerica | exon |
| TCONS_00048997-exon-scaffold_15-1510915933:375676..375725 | TCONS_00048997-exon-scaffold_15-1510915933:375676..375725 | Clytia hemisphaerica | exon |
| TCONS_00048997-exon-scaffold_15-1575043694:375676..375725 | TCONS_00048997-exon-scaffold_15-1575043694:375676..375725 | Clytia hemisphaerica | exon |
| TCONS_00048997-exon-scaffold_15-1491911889:376695..376921 | TCONS_00048997-exon-scaffold_15-1491911889:376695..376921 | Clytia hemisphaerica | exon |
| TCONS_00048997-exon-scaffold_15-1510915933:376695..376921 | TCONS_00048997-exon-scaffold_15-1510915933:376695..376921 | Clytia hemisphaerica | exon |
| TCONS_00048997-exon-scaffold_15-1575043694:376695..376921 | TCONS_00048997-exon-scaffold_15-1575043694:376695..376921 | Clytia hemisphaerica | exon |
| TCONS_00048997-exon-scaffold_15-1491911889:377281..378284 | TCONS_00048997-exon-scaffold_15-1491911889:377281..378284 | Clytia hemisphaerica | exon |
| TCONS_00048997-exon-scaffold_15-1510915933:377281..378284 | TCONS_00048997-exon-scaffold_15-1510915933:377281..378284 | Clytia hemisphaerica | exon |
| TCONS_00048997-exon-scaffold_15-1575043694:377281..378284 | TCONS_00048997-exon-scaffold_15-1575043694:377281..378284 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:374909..378284 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006355 | regulation of transcription, DNA-templated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003700 | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | sequence-specific DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006355 |
regulation of transcription, DNA-templated |
| molecular_function |
GO:0043565 |
sequence-specific DNA binding |
| molecular_function |
GO:0003700 |
transcription factor activity, sequence-specific DNA binding |
Blast
BLAST of TCONS_00048997 vs. Swiss-Prot (Human)
Match: ELK1 (ETS domain-containing protein Elk-1 OS=Homo sapiens GN=ELK1 PE=1 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 4.507e-21 Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 1
Query: 628 LWQFLLHLLNRDTNERYIQWSKEYELEFRIKDTVGVAELWGSVKNKTDMTYEKLGRAMRYYYGKSIIEKVTGRRYSYRFI 867
LWQFLL LL N I W+ EF++ D VA LWG KNKT+M Y+KL RA+RYYY K+II KV+G+++ Y+F+
Sbjct: 7 LWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRYYYDKNIIRKVSGQKFVYKFV 86
The following BLAST results are available for this feature:
|
