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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048994 ID=TCONS_00048994|Name=TCONS_00048994|organism=Clytia hemisphaerica|type=transcript|length=3080bpRun BLAST on NCBI protein sequence of TCONS_00048994-protein >TCONS_00048994-protein ID=TCONS_00048994-protein|Name=TCONS_00048994-protein|organism=Clytia hemisphaerica|type=polypeptide|length=754bp MESFIGKQLQLDYEEDDGFITYKGTVKNVDTRQKKLIIKNVFDITNDKKLRun BLAST on NCBI transcript from alignment at scaffold_15:344512..351498+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048994 ID=TCONS_00048994|Name=TCONS_00048994|organism=Clytia hemisphaerica|type=transcript|length=6987bp|location=Sequence derived from alignment at scaffold_15:344512..351498+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_15:344512..351498+ >TCONS_00048994 ID=TCONS_00048994|Name=TCONS_00048994|organism=Clytia hemisphaerica|type=CDS|length=24915bp|location=Sequence derived from alignment at scaffold_15:344512..351498+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048994 vs. Swiss-Prot (Human)
Match: EXD1 (piRNA biogenesis protein EXD1 OS=Homo sapiens GN=EXD1 PE=1 SV=4) HSP 1 Score: 110.538 bits (275), Expect = 4.796e-25 Identity = 73/205 (35.61%), Postives = 107/205 (52.20%), Query Frame = 3
Query: 480 LIDKIDSSFYQAHTMICNQKNISMLVDGPKINRFGDISLLTIGTRHMVYLFDIESLGNDAFQKGLLSVIENPNILKICHDVRMVSDCLQGRYHIHPVNIFDTQVADAFVHKNENGTF-PEKVSSLSECVKKHLPIED--LGFDNKSLNLRD--------RPISMETQRHIALRAMYLRELRTIMMEKLLADYLYGVDIYLKTIRQ 1061
+I++ F A I Q +S+ +G + R G + L + T VYLFDI LG+ AF GL ++E+ ILK+ HD R +SDCL +Y I N+FDTQVAD E G + P +++L E + KHL + L F K L RP+S + +AL A YL LR +++++++D VD YL T R+
Sbjct: 80 VINQFQQKFGAAILHIKKQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVAPKYLSFLEKRQKLIQENPEVWFIRPVSPSLLKILALEATYLLPLRLALLDEMMSDLTTLVDGYLNTYRE 284 The following BLAST results are available for this feature:
BLAST of TCONS_00048994 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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