TCONS_00048994-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048994-protein
Unique NameTCONS_00048994-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length754

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048994-protein ID=TCONS_00048994-protein|Name=TCONS_00048994-protein|organism=Clytia hemisphaerica|type=polypeptide|length=754bp
MESFIGKQLQLDYEEDDGFITYKGTVKNVDTRQKKLIIKNVFDITNDKKL
RNEKHCFGEKIKDLKILQDAPLDKESRPITSDVKYEKKNQNSTLYMDTAD
EGTSLFQMDHLQPSNYINGIDSNFSDLSLNEPPKVILIDKIDSSFYQAHT
MICNQKNISMLVDGPKINRFGDISLLTIGTRHMVYLFDIESLGNDAFQKG
LLSVIENPNILKICHDVRMVSDCLQGRYHIHPVNIFDTQVADAFVHKNEN
GTFPEKVSSLSECVKKHLPIEDLGFDNKSLNLRDRPISMETQRHIALRAM
YLRELRTIMMEKLLADYLYGVDIYLKTIRQEPDHGLKFVNTNKLPREMIK
QFSNKTTDNHHRGKFQTSRRKNNNRNIEDELEDETFNDFVVQQSNRSAWD
AGETFSQQYQEKHGEIVESMGDKFTLLNHDKPILRQSNSPNLSDSQRSDK
ESTPLDIKGKPHSKSSNKGSDSDTSVGSKRQKSHVRQFKTREQNFDDYQF
STTSDSDCDPFLVTSGDREEYDMAQIEELMKMEMNKVNNKPHTSKKQKNQ
TFNSNKEQPSKGAPHISNAGKRMIMRGLGAEKTTNNKSLKPPNQQLTRDS
YYSSSPASSVDPNEYPSLQEAAKTSSKTSPGDRQSKSKFNNDQSGHHSPY
TNGVVSPSFNGSGNSQNDSFSSPIKPRGRGQILRSLTENQTNKNRPPPGF
VEIGAPRQIREMKTSYDFPSDDELLDTPHVLKAVEGTVITGENVSVLKKK
YTSH
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_031119XLOC_031119Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048994TCONS_00048994Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR0025623'-5'_exonuclease_dom
IPR012337RNaseH-like_dom
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:00084083'-5' exonuclease activity
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006139 nucleobase-containing compound metabolic process
molecular_function GO:0008408 3'-5' exonuclease activity
molecular_function GO:0003676 nucleic acid binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR0025623'-5' exonuclease domainSMARTSM0047435exoneu6coord: 133..314
e-value: 2.1E-5
score: 34.0
IPR0025623'-5' exonuclease domainPFAMPF01612DNA_pol_A_exo1coord: 173..313
e-value: 1.1E-7
score: 31.7
IPR012337Ribonuclease H-like domainGENE3D3.30.420.10coord: 75..312
e-value: 7.0E-19
score: 67.4
IPR012337Ribonuclease H-like domainSUPERFAMILY53098Ribonuclease H-likecoord: 102..320
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 538..678
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 354..379
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 433..516

Blast
[Close]
BLAST of TCONS_00048994-protein vs. Swiss-Prot (Human)
Match: EXD1 (piRNA biogenesis protein EXD1 OS=Homo sapiens GN=EXD1 PE=1 SV=4)

HSP 1 Score: 111.694 bits (278), Expect = 1.050e-25
Identity = 73/205 (35.61%), Postives = 107/205 (52.20%), Query Frame = 0 
Query:  137 LIDKIDSSFYQAHTMICNQKNISMLVDGPKINRFGDISLLTIGTRHMVYLFDIESLGNDAFQKGLLSVIENPNILKICHDVRMVSDCLQGRYHIHPVNIFDTQVADAFVHKNENGTF-PEKVSSLSECVKKHLPIED--LGFDNKSLNLRD--------RPISMETQRHIALRAMYLRELRTIMMEKLLADYLYGVDIYLKTIRQ 330
            +I++    F  A   I  Q  +S+  +G  + R G +  L + T   VYLFDI  LG+ AF  GL  ++E+  ILK+ HD R +SDCL  +Y I   N+FDTQVAD      E G + P  +++L E + KHL +    L F  K   L          RP+S    + +AL A YL  LR  +++++++D    VD YL T R+
Sbjct:   80 VINQFQQKFGAAILHIKKQNVLSVAAEGANVCRHGKLCWLQVATNCRVYLFDIFLLGSRAFHNGLQMILEDKRILKVIHDCRWLSDCLSHQYGILLNNVFDTQVADVLQFSMETGGYLPNCITTLQESLIKHLQVAPKYLSFLEKRQKLIQENPEVWFIRPVSPSLLKILALEATYLLPLRLALLDEMMSDLTTLVDGYLNTYRE 284
The following BLAST results are available for this feature:
BLAST of TCONS_00048994-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EXD11.050e-2535.61piRNA biogenesis protein EXD1 OS=Homo sapiens GN=E... [more]
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