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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048990 ID=TCONS_00048990|Name=TCONS_00048990|organism=Clytia hemisphaerica|type=transcript|length=738bp
CTTCAAATCACCAGCAATATTTAGCAATCAAAGCTTTTTAGCAACAAAAC
CACATTGGATAATCAATAAATTAGCCGTCTTGGACAAGTTTTGACAAGAT
TCACCTTGAATTTACCAACAGTAACGCATATACTACCGGCCAACCAGGTC
AAACAAACTTTCATTGACAATACTTATATCACCAGAATGAGGTGTTGCCG
TACAACCATCTTAACTCTGGCAATTCTCAATGTATTCTTATTGTTATCTT
TATGTGCCTCCACAGATGGAGTTGCAAGTGCTGGCAATTCGATAGACATT
GTTAAAAAAGATTTGGTGATGATTGATAAAATTGTACAAGTCCTTAACGT
TATTGGTAGAAAGACCAACACATTAAATAAGCACCTATTGAGGACCAAGC
AAGATTTTGTGCAGAGAAAACGAGAACTTTTACTCAACAAACTTATGGCG
AAAGATGAAACTACCAAAAAAGATAATTATGAAAGGAGACGTTGATATAT
TAGGAATTATATAGGAATAATGAAATATTGGAATAACAAACACCCCAGTg
gtaaaattatttcataataGGAAAATAGACCTAAATATGGGTGTTCCTAA
AAGGTAGGGTACCCCAAATTGGGCAACTTATTGGGGGGTACCCAATGTGC
CCTAGATTTTAGAAACTGATGCTTGAGTTCATGATAAAATGATAACCTTC
GATTGATTATTTACAAATATCAGATTTAAGATTGCCAT Run BLAST on NCBI protein sequence of TCONS_00048990-protein >TCONS_00048990-protein ID=TCONS_00048990-protein|Name=TCONS_00048990-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MRCCRTTILTLAILNVFLLLSLCASTDGVASAGNSIDIVKKDLVMIDKIV
QVLNVIGRKTNTLNKHLLRTKQDFVQRKRELLLNKLMAKDETTKKDNYER
RR Run BLAST on NCBI transcript from alignment at scaffold_15:304579..306776+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048990 ID=TCONS_00048990|Name=TCONS_00048990|organism=Clytia hemisphaerica|type=transcript|length=2198bp|location=Sequence derived from alignment at scaffold_15:304579..306776+ (Clytia hemisphaerica)
CTTCAAATCACCAGCAATATTTAGCAATCAAAGCTTTTTAGCAACAAAAC
CACATTGGATAATCAATAAATTAGCCGTCTTGGACAAGTTTTGACAAGAT
TCACCTTGAATTTACCAACAGTAACGCATATACTACCGGCCAACCAGGTC
AAACAAACTTTCATTGACAATACTTATATCACCAGAATGAGGTGTTGCCG
TACAACCATCTTAACTCTGGCAATTCTCAATGTATTCTTATTGTTATCTT
TATGTGCCTCCACAGATGGAGTTGCAAGTGCTGGCAATTCGATAGACATT
GTTAAAAAAGATTTGGTGATGATTGATAAAATTGTACAAGTCCTTAACGT
TATTGGTAGAAAGACCAACACATTAAATAAGGTATTGGTTCTATGATTAT
TGATTCTTAAcagcgttttttataagaacaaactatataagaacatgagg
ttTAGATGACCaaattattaagaacaagtttttaCTAAGGCTTTACAAAA
CACCCGAATTCttttaggaaaatagacaaaaatactctcaAAACGGCAAA
AACTAGAACATTTTCAAGCTTAAAACTctttaaagggacccctcgcttgt
ttgtgatctttaggaaatcaaactatattggtccaaaaacccctaaaaac
atattcaaagaacataaaacttactgctagttcctgtagagatatcgaaa
aattcctctgaaaacaaaattgtgtctccgtctgactgaaaccaacacaa
CTGGGGCTCATTGGAAGTTCTGAAGCCGATACCGATTCTCCATAAACCCG
CAACTCGACTCCAAGCAAAGGGTTTTTCTTAGAAGAAGAGCACTGTTCGA
ACCAGTGCTGGCCTTTACACTCGTATTGTAATTTCCCGGCGCATTTGCGT
CGACAACTTAGTGTGACAAGAGCGGGAGAAAATTCGAAGACCTTCAGAAG
CCagttgaaatttctgaaagttaGGTAAACATCAAAATTTGTAACTTGTA
ATTATGGAGCGAAGAAAGAGTTTTGCTTTTGCATGCTAATACTTTTGGGA
AGTTGcttttcatatgattatgaagtgagtgtcttgttttcatttttata
gcgaggggtccctttaaattaagaacatccgaaggcttcaagaAATTTGG
ATACTCTTATTAAAAACTTGTATTCATGGAAACTGATATTCACTTATGCA
ACATAGTTAGACTAAAATAATGTTGTGGATGCGATTTGGGCTGCACTTAT
AGATTTAtaaatcccgaagggctagatattgtgctttggctgaaaagtgt
gtcgaggttgcaggcacgacggaagctttttatatctggtacggcgaatg
aggaaatttaagcgattttatagcgattttaccgacgaagaggaaaactt
cgggtatttNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNgg
cccccccccccccccccctgccgtacccgttgcgtcgtgcctgttaggta
ggaaatcctacctaggtcacgtgatatTATAATAGattttcagcgcttga
ccaataagaagcttcgcgggttttcgaaaacaaaagcatcaatatttttt
gcaatatccacttttttttgctttgaagagcttaaagcacgacatctata
GCCCTTCgtgctttataaatctattgaCAGAATTATCTTAGGCTAGCTGG
GAAATACTAGTAAGTCActtattttctgtttttatttataGCACCTATTG
AGGACCAAGCAAGATTTTGTGCAGAGAAAACGAGAACTTTTACTCAACAA
ACTTATGGCGAAAGATGAAACTACCAAAAAAGATAATTATGAAAGGAGAC
GTTGATATATTAGGAATTATATAGGAATAATGAAATATTGGAATAACAAA
CACCCCAGTggtaaaattatttcataataGGAAAATAGACCTAAATATGG
GTGTTCCTAAAAGGTAGGGTACCCCAAATTGGGCAACTTATTGGGGGGTA
CCCAATGTGCCCTAGATTTTAGAAACTGATGCTTGAGTTCATGATAAAAT
GATAACCTTCGATTGATTATTTACAAATATCAGATTTAAGATTGCCAT Coding sequence (CDS) from alignment at scaffold_15:304579..306776+ >TCONS_00048990 ID=TCONS_00048990|Name=TCONS_00048990|organism=Clytia hemisphaerica|type=CDS|length=618bp|location=Sequence derived from alignment at scaffold_15:304579..306776+ (Clytia hemisphaerica)
ATGAGGTGTTGCCGTACAACCATCTTAACTCTGGCAATTCTCAATGTATT
CTTATTGTTATCTTTATGTGCCTCCACAGATGGAGTTGCAAGTGCTGGCA
ATTCGATAGACATTGTTAAAAAAGATTTGGTGATGATTGATAAAATTGTA
CAAGTCCTTAACGTTATTGGTAGAAAGACCAACACATTAAATAAGCACCT
ATTGAGGACCAAGCAAGATTTTGTGCAGAGAAAACGAGAACTTTTACTCA
ACAAACTTATGGCGAAAGATGAAACTACCAAAAAAGATAATTATGAAAGG
AGACGTTGAATGAGGTGTTGCCGTACAACCATCTTAACTCTGGCAATTCT
CAATGTATTCTTATTGTTATCTTTATGTGCCTCCACAGATGGAGTTGCAA
GTGCTGGCAATTCGATAGACATTGTTAAAAAAGATTTGGTGATGATTGAT
AAAATTGTACAAGTCCTTAACGTTATTGGTAGAAAGACCAACACATTAAA
TAAGCACCTATTGAGGACCAAGCAAGATTTTGTGCAGAGAAAACGAGAAC
TTTTACTCAACAAACTTATGGCGAAAGATGAAACTACCAAAAAAGATAAT
TATGAAAGGAGACGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048990-exon-scaffold_15-1491911889:304579..304959 | TCONS_00048990-exon-scaffold_15-1491911889:304579..304959 | Clytia hemisphaerica | exon |
| TCONS_00048990-exon-scaffold_15-1510915933:304579..304959 | TCONS_00048990-exon-scaffold_15-1510915933:304579..304959 | Clytia hemisphaerica | exon |
| TCONS_00048990-exon-scaffold_15-1575043694:304579..304959 | TCONS_00048990-exon-scaffold_15-1575043694:304579..304959 | Clytia hemisphaerica | exon |
| TCONS_00048990-exon-scaffold_15-1491911889:306420..306776 | TCONS_00048990-exon-scaffold_15-1491911889:306420..306776 | Clytia hemisphaerica | exon |
| TCONS_00048990-exon-scaffold_15-1510915933:306420..306776 | TCONS_00048990-exon-scaffold_15-1510915933:306420..306776 | Clytia hemisphaerica | exon |
| TCONS_00048990-exon-scaffold_15-1575043694:306420..306776 | TCONS_00048990-exon-scaffold_15-1575043694:306420..306776 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:304579..306776 + |
Blast
The following BLAST results are available for this feature:
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