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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048988 ID=TCONS_00048988|Name=TCONS_00048988|organism=Clytia hemisphaerica|type=transcript|length=523bp
GCCCCATTTGGATGAATGGCTTGCACCCGGATACTATCGGCCAAACAAAG
ACAGTTCCTGTATGTGTTCGATTTCAGAGTGCTTGCTGTAAAGATACTTT
CAACATTGATGTTAAAAAATGTCAGGAGGGAAATGAAGAGTTTTACGTCT
ATAATCTACTACCTGCACCTGGATGCCCAGAGTCTTATTGTATAGGAAGC
GAGACACAATGCCCTGAAGGCAAACTTTCGCCTAACGGATTCACTCCGGG
ATGTACAGatcAGTACCCCAGGTTATCAGGAATTCCAACAGTAACTGTGG
ATCAAAAGGTTTTGAATTTTACTTGTAAATTTACCCCTCAATACCCTAAC
AGTAATGCAAAACATCAAGTTCTATGGTATGGCGCTCCACCAAATGCAAA
TCGAAAGTTGTTAAAGAAAGAAACGCTACAAGGGACAGCACACCAATCTT
ATTTGTACAATAAACAAGCAGAGGATCTAACCTTTTTATCGATGCAAGAT
TTTTGATAATGGTGGACCAGGAC Run BLAST on NCBI transcript from alignment at scaffold_15:280827..287905+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048988 ID=TCONS_00048988|Name=TCONS_00048988|organism=Clytia hemisphaerica|type=transcript|length=7079bp|location=Sequence derived from alignment at scaffold_15:280827..287905+ (Clytia hemisphaerica)
GCCCCATTTGGATGAATGGCTTGCACCCGGATACTATCGGCCAAACAAAG
ACAGTTCCTGTATGTGTTCGATTTCAGAGTGCTTGCTGTAAAGATACTTT
CAACATTGATGTTAAAAAATGTCAGGAGGGAAATGAAGAGTTTTACGTCT
ATAATCTACTACCTGCACCTGGATGCCCAGAGTCTTATTGTATAGgtaaa
agaaattttatccGCAATGCAATTGGTCCTTAGAGGACATCTTTAGTcta
aatcgcagacctctatagatatacttcctatatgaaaaacaattttcgct
agaggatgagcagaagcctatgaCATCATTTACAGGCCCTGGGGAGACTT
Caacctccccacttttgagcttctcaaattcctagcaaattttatctcat
ttatCCCCACTTTAACGGCTTTTCCACCGGGCCTGATTTCACGTATCTCC
TACAATAGTTAACTCAAATTCGAACTTCTTTTAGTCAAATCTTCCTACAA
TTTAGActagaataagaattttccgctCAAGGCTAGAGAGTAGTATATAG
TACTCACTGCATTTCGAATCATTTTCTAAttcgatcaaaattttaaaagc
aaaaagtGAATAAACAACCGGGGGGTTTATTCTAAGTAATATGATAAGCC
TTTTAAGTATTCATTTTCATAAGATAATGATGCGATAATTTTCTATCATC
TTGCTAAGTTTTCTTGATAAATACTAAAATGTGAAATTTCTTTATCAGGA
AGCGAGACACAATGCCCTGAAGGCAAACTTTCGCCTAACGGATTCACTCC
GGGATGTACAGGTAAATTAGTGATATTCATGTTACCCTGCGCattgggcg
aaataagagatttccagtcctggaaatatcttgaaaatttttgggggCTG
GGGAAGAGATTTGGTGCCAATACTACGGCAGGTAAAAATCNTTCTAACGG
CAGTCAGGCCGATATCCggggaaaaacttttaaataaaaatgttgtTGTC
GTGGGCCCAGCCTTAGTAACCGGCTGGCGCACCACGACATCTGGGGGCTC
AGCTTTAGAGGATGAGCCTGATGGAGATAGATTATAAGGGAGATGTACAA
TGAAAAAATGGAGAAATTCAAAAACCGAACTTTGAAAAAAANNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNAACAAACAATCTTTGtgaattgaaa
acaaaccagAACAAACTGTAGCTGATTTCAAACTCTTCAAATGTATGCAC
CTTTCACTGAAACTTGATACACCTGCTTGCGAGCAGcctttcaaattaaa
atttgattgcTTACCCATTTTTCAAACTGTATAAATTATGATTTATTGAT
ACCCAAATTACCGTCAGCCACGCCCCGAATCATGAACAATAATGAACAAA
CGTTGTATAGAAACCACATGTTAAATCAAACCCAAGCAACTTAATTATTA
ATGCTCTGATTTGATTATTTGTGGAAACCAAACGTCTATGGCAGCGTCCA
ACATGGATTCAATCGATCTTTAAACCGATAGCCGCTCTTGAGATAACCAC
CAACCTTGTGTCGGACACGATGTGACTATTGAAAACGTCCACGACTGCTC
CTCTTTTGTTTATGAGCCAATCACATTGATGTTTATCGTACAAACGATTT
GTATTGAGATCATATGAATCACCTAAACGTTGACCACGATGACTTTCCAA
TTTTCGATGAGTATGATAAGACTTTTAGATCTTTCTTAGCTGATTTTAAT
GAACTGTCTTCCGTTGCTGAATTGAGTGACAACCAGAAGCTGATTCTACT
ACCAACCCGTTTGAGACGAAGACCAAAATGGTATTTTCGAGGACTAAGCA
ACGAGCGAAAGAATACGTATGATAAAGCCATTGAAAGTCTGACTACTGAG
TTTGACAATGGATCTCTTTTGAGAAAGGATCTCTATTCTATCAAACAGGG
TCAATCTACGTTGGATGAATATGTTGAGAAAATGGAACAAATGTTTACCG
AGCTGAATGTTAAACCCGATGAAAAGTTAGATTTCTTTATGGCTGGTTTA
GACGAAAACACTCAAAATGATTTGTTCCTGAACGAGATTGATTCATACGA
AAAAGCTGTTAGAAGACTGAAGCTGAAGTTGTCAATCGAAAAGAGAAAat
cgtcaaaatcgaaaaaacccTTTACGAGAGATCGAGAAATGTCCGAAAAT
AAAGCACACCAGTCCAAAACCATGGGCAATGACCAACTTTGTTACGTTTG
TCAAGAACCTGGCCATTTAGCGATTAACTGTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNA
TCTACTCCATGAACTCCATCTCCTGTCTTCTAACGGCAGTCAGGCCGATA
TCCggggaaaaacttttaaataaaaatgttgtTGCCGTGGGCCCAGCCTT
AACCGGTTGGTGCACCACGACACTGGTATTATTCTTAATTTGCCCTTAGG
TTtaatccccactcgaaattcaatacttgaaaaaattgcactccaaaacc
atccccactggatttttaaaacttggaacaatagaatttctatccccttt
gggatttcaataggaactTTATCCCGACTGATGAAAAAAGCcccactggg
gctgtgagacaggggtgctaTAAGAAGATGTGTTGTAAAAAGGTCTCTCG
AATCTTCTGCAGTTTTCGAGTCAATCGACTTTTGGTTAATGAATAGAATT
TATCAAGTCGAAAaaggtctgaaaatcaaatattttgatgttaCCAACGG
ATTCGACACTAAAAGAAGTAGATAAAGAAATTGAGGCTacttgttaagtt
tcgaccaacTGGTGCCAAGATTGTTTAAGTGTTTAtctgttttcttcatt
tttagatcAGTACCCCAGGTTATCAGGAATTCCAACAGTAACTGTGGATC
AAAAGGTTTTGAATTTTACTTGTAAATTTACCCCTCAATACCCTAACAGT
AATGCAAAACATCAAGTTCTATGGTATGGCGCTCCACCAAATGCAAATCG
AAAGTTGTTAAAGAAAGAAACGCTACAAGGGACAGCACACCAATCTTATT
TGTACAATAAACAAGCAGAGGATCTAACCTTTTTATCGATGCAAGATGTA
AGCAAAGTTcgataaatattttaatattattCGATTCATTCTGTAAATCG
AACTAAGATATTGATTCCCTTAGTgctttaaattactctctgtaatttga
atctttctctaattggaagaaattttttggTCCCATGAAGATATCGAATA
AGAGGGAGGCAACTGTTTCAtaatctttttttatataatgaAAAATGCTA
GCTTTTCATTTAAACTTTTTACACAGTATCAAACAGCAAATTTATCtgaa
taggccatttcacaattctaatggatcatgggtaatcaggactgattgtg
CCTCCATAACCGCTTATCCCCTGTGAAAGGGCTTATATAACTAACAAGAA
GATGTTGTTAAGAAGTCCCCGACTTTGTACAGAACAGACCTATGTCTACT
ATAAATCAAAATTCCTCAAAGATTAAATAAAACCGTTTGTGAAAATGAAG
GAAACAAaacgttttgaaaatattttacatcCCAGTgaattccaattttt
ttctaatttcgacacACTGGTTACTCGACACTCACTGATTAAAGAGACAG
GGTcgcattgggcttttccagaaaaaaaatgttacccccactgttgagga
tattgatttttcgtaTTTTTCGTATATATCGAACACCCTGGATATCCATT
CTtgaaaatatgctcaaccccctggatatcctctcttataagaTGCTTAC
CCCCCCTGGatatcatattttttacttggtaaagtaaacaaaaacccTAG
ATATccactcccttgtagatatttaaccccctatatccactttttgaaca
aaaattgttaaccccctggatatccgatatcatCAACAGGGGGACACGGA
CTATTTCTAGAAAAGCCTATTAGAATAACATTACGCAATTCAATATTTAT
CGTTATACAGATTTATTGTGAAGTTCATTCATATTTTGCTAACTCTGCGA
CGGTAACAGACAAGAAAAGGAGTGACTTTTTCTATGCTGGTATCAAGgta
ataatattttgaaactttttcgtTCAGCCAGGTTCTTATTTCTTAAAGAG
GCgttgaattttttaaatcgaTGTATTGGTGTATAATGCAGCAAAACCAG
GGAAATAGCAACAAAGTGGCTAAAATCACCAGGAGAAAAGTCCGGTGTGT
TGAGACAAGCGTGTACTCAAATATGAGAGACCCTCCCAGCGCCATTCATT
ATCACGTATTCACGCCAAGTTTTCGCTCTCACCACGAACACATAAATTAC
CAAAATAAGATCAtcacaaaaaagaaaatagccaaaatagctcaaaaact
gctgacttaTCTATTAACATTACTCGCACTCATAGATCAGTCCTCAAACA
ATGATTCTGAAAGAAAGTGATGGTCCTAAAGATATAACATTCAAAACAAC
AGTACCGATTACTTGTGGTCCTGGTATTACTTCGTGTAAGCTGGTTATAG
AAGTAGCACAAACtgtaaaagattttgttttgagctTCTGCACTGTAAGG
TAAGTTTCAGGTTATATTCTCATACCTTTTgaagaaagattttgttttga
gctTCTGCACTCTAAGGTAAGTTTCAGGTTCTCATATATTTTGAAGGAAT
CTTTGGTTTTTAAAGTTTACAACCAAAGAGCCACGGTATGGTTCAACATA
CCCTGAATATtttcgggtcatgttcgggtcAAAattagactgggaatcca
gtcgtttataacgtttttgttgaaagcgggaaatttttatgtcgggatat
ggttgaaataaacgactgggctaaggtggtttccgtagcttacgggagtt
ccagcaggtcccgcagatttctgcggggtgagaaaacaatcatatacaac
aaaatatataaacaaataaaaatttcagccaatgagaattNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNtgttgtgcacaaaatattctagacgactatattgatgc
tcctgtcaagttttctacttcctattttttactgagttaagtcgtctagc
atgctagactaggtcaaaatagaaaaacattattttagCCCGAACAATGT
TCGGGTCAAGTTCATGCCACAAATATTTGGATTTCTCCATTTAAAAACCT
GACCCGAACATACCCGGATCATACACGGGTCAGTTTGGGTCATGTTCGGG
ACATTTTCAAGTTCATATTCGCCGAGTAGCCCGAAAAGGTTTGGGCCATA
CCGTTACTTCCCAAAAGTATTCACCTTAAGTAGGTCTACCAATGTTCTca
caaaaaaacgtttttaattttgatacaAAACCACAAACCCTTGTAAACTT
TAATTATGTCTGACGACCTCGAAGTGTTGTAGCACCGCAAGTTTTTGAGG
ACGACCcgcagctggtacacaacgttgtttcaacgtttatttaacgttca
caacgtccatataacgttagataaacgttgaaacaacgttgtgtgtcagt
tGGGGAGGTTGGCTATTATTTCATACATTTCAAGAAAAGTTTATTCTCCT
TTTGTTATGtgtatgaaaatatttatccGTATTTTCGGGGCTCTTGTTAT
ATTTAGTTTTGATAATGGTGGACCAGGAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048988-exon-scaffold_15-1491911889:280827..281021 | TCONS_00048988-exon-scaffold_15-1491911889:280827..281021 | Clytia hemisphaerica | exon |
| TCONS_00048988-exon-scaffold_15-1510915933:280827..281021 | TCONS_00048988-exon-scaffold_15-1510915933:280827..281021 | Clytia hemisphaerica | exon |
| TCONS_00048988-exon-scaffold_15-1575043694:280827..281021 | TCONS_00048988-exon-scaffold_15-1575043694:280827..281021 | Clytia hemisphaerica | exon |
| TCONS_00048988-exon-scaffold_15-1491911889:281575..281637 | TCONS_00048988-exon-scaffold_15-1491911889:281575..281637 | Clytia hemisphaerica | exon |
| TCONS_00048988-exon-scaffold_15-1510915933:281575..281637 | TCONS_00048988-exon-scaffold_15-1510915933:281575..281637 | Clytia hemisphaerica | exon |
| TCONS_00048988-exon-scaffold_15-1575043694:281575..281637 | TCONS_00048988-exon-scaffold_15-1575043694:281575..281637 | Clytia hemisphaerica | exon |
| TCONS_00048988-exon-scaffold_15-1491911889:284882..285123 | TCONS_00048988-exon-scaffold_15-1491911889:284882..285123 | Clytia hemisphaerica | exon |
| TCONS_00048988-exon-scaffold_15-1510915933:284882..285123 | TCONS_00048988-exon-scaffold_15-1510915933:284882..285123 | Clytia hemisphaerica | exon |
| TCONS_00048988-exon-scaffold_15-1575043694:284882..285123 | TCONS_00048988-exon-scaffold_15-1575043694:284882..285123 | Clytia hemisphaerica | exon |
| TCONS_00048988-exon-scaffold_15-1491911889:287883..287905 | TCONS_00048988-exon-scaffold_15-1491911889:287883..287905 | Clytia hemisphaerica | exon |
| TCONS_00048988-exon-scaffold_15-1510915933:287883..287905 | TCONS_00048988-exon-scaffold_15-1510915933:287883..287905 | Clytia hemisphaerica | exon |
| TCONS_00048988-exon-scaffold_15-1575043694:287883..287905 | TCONS_00048988-exon-scaffold_15-1575043694:287883..287905 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:280827..287905 + |
Blast
The following BLAST results are available for this feature:
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