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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048963 ID=TCONS_00048963|Name=TCONS_00048963|organism=Clytia hemisphaerica|type=transcript|length=3287bp
GTTACCTTTTCAacataatcttacaatagacagagGGTGAAAGTTTAAAC
AATGCTCAACcgtcaagaaatatttttgctctcagTTTTAACAATTATAA
TCGAAAAGAACATATTGGCGAACAATATGTTTTGCGCACCATAATGTACG
AAACAAAAAACGGGTGCTCTATTacgagaaagaattttcttttggtaaac
aattcccctattGATTCAGGTTGAAAAAGAGAGAAAGTACAGAGGCTGAA
TGCACgtggctttcactttcttttaatcTATGTACTATGActgaatttaa
attgaaaagagaaaGGGATCATAGTATAATCAGGAAAATTGCgtaaaata
taatttgtataatcttacataaatgattttttttttaaataaataaagtt
tcagcgaatgaaagtttgtaaattgcctaaatattttatcatgattagca
caattacgcatgaattaatCTATTTTATGCACTTTGGATCATGAATTGTG
TATCATAGAttgttagatcgtgcatcttaaattacaccaaccagcaaaat
ggcaatgccccaGCCATTCTAATTCGCGTCAGCATAGCCGAATGCCGACG
CAAATGCCGACGCAAATGCCGACgtaaatttgactaaaaattgCTGACGT
AAAAGTGCTTACTGTACTATAAAACCCAGAATTTTTTGCTGACGCAAATA
AATCTGAATTAGAAAGGCTGCCCAAAATATGACAAAGCttgattttccca
aaataatttttgggcaaatttgggcaaaaatcAGTTGTGCAAAATAGTTT
CACTAagtctttttctgatttttggtagaaagatagagttctctaaaaag
tggctggagtgatttttcccgaaaaaaatttaccttgaaatacacatttt
aatttttttcctgatATGTATCTCATGTTATCTCATGATTGGAAGCTGCT
ATGAATCAGTCACCTGATTTACTGGTATTTTACAAACCAGAATCTATTAT
TTACTCACTTACTTCTTCTGACTAGCTCGTGTTTGCAGATGCCAACATTG
AGGGGTTAGGTTTCTTTTTTTCAAGACCTATGTAGAACTCGTCTGCTGAC
CGACCATCAAGCACGTGATCTTTGAGTGTTTTGATTGGTCGGCCTCTTTT
CTTGTTACCGTTGTTGTTGAAAAACAGTCTTTTGACAATGCTGGTGTTCT
TTTGTCTTGCAATATGGCCAAGAAAATTTTGCTGCTGTCATTTGACATAT
TGAAGGATGTCTTCAGTTATGCAAACGCGTAGAACATCTTCACTTGACAT
GACAAAGTGGAAAGTTTGTTCATTGTTTTCATTGATTCTTCTTTCAAAGC
TGCCTATCACCATCTCATGAAGTATATTAACGTAGGTGTATCGGATTATT
AAAGGGTTTTGTTTAATGCTTGATAGCTAAATCAACCTCCCAgccttttt
aaataatatgacaAATTTGGGAAGTGCTATgaacttgttttatttttcag
tctgtttcttattattattgtaatttttcatattttcttattaaatcaat
cttcaggtaggtccattcagcatgtagcttgttctatttgcttttttaaa
atttttaaggttATGTTTAATGTCAGTAATGCTGATTGCTGACTTGAAAT
ATGAGGACTATTTGGTTTGTTTGCATTTCTTGTAggtaaaaaaatgttat
ttggAGGAAAAGTGCTCTGTTTTGTGACAGGTGCTAGTAGTGGATTTGGT
CGCTCAATATCTAGGTTGCTTCTTTGTCAGAATGGTCTGCTATCAAAAGC
TCAAGTGGGCTCTCAAATTATCCTGATGTCAAGAAATCTTGATCAATTGA
AGGAGACTCAGAGGTTAATGGAAGATGGATCTACAAACAGTGAACATTTT
ttaatccaatgtgaaaagctGGATCTTAGCGATACAAATGCTgttgaaat
taaatttcctgATCTGCTTATGTCTTTAACAGGAGAATTTGATCATGTCT
TATTTTTCAATAATGCTGGTTCAATTGCTGATGTTTCTAAACCTATCTTA
GACTATCAATGGAGTATACAGGATTACACAAAATATTTCAACCTATCAAT
TATTTCTTCCATTTACATGATTAATGCCNTAAACCTATCTTAGACTATCA
ATGGAGTATACAGGATTACACAAAATATTTCAACCTATCAATTATTTCTT
CCATTTACATGATTAATGCCATGATTCATAAATTTTCTCTCCATCCCTCA
AAAATTGTAATTATCCAAACATCAAGTCTTGCAGCTGTTCAAGAAATGGC
GTATATGCCATTATATTGTGCTGCAAAAACATCAATGGATATGTTCATAA
AATGTGTTACCAAGGATCATCCCAACATTAAAACATTGAATTATGCTCCA
GGACCTCTAGATACTGCAATGGGACAGGATATGAAAAACAAACATGGCTC
AGATGACACGAGACAGTTTTTTAATCATTTGTTTGAATCTAGAACCATCA
TCAACCCTGATGATTCAGCTGGGAAACTAATGGGTTTGCTGGAAAAAATG
GATTTTGAATCTGGTGCTCACATAGACTACTATGATGTATAATTTTATTT
AGAAGATTAATAAAAGATTAAAGTTATATTTATATGTCAATAATTCAATT
CTTATCATTTACATAAAGACTTTTCGAGGGGCACAGCAATATAAGAAGAG
TCCTTTCTGGAGGAGGGActttaagttttttaatttgCTGTGGTATTGTT
TATCTGTTTAATTAATGATCTTCTCCTATAAAGAATAAAGAGAAAATTCC
AAAATCTTATTATTAGCAATGTTGTtataagaaataagaatttctgtcct
aCTAATAATAGTTTGGGTGGCACTCCACATTGCACTACTCATCATCTGCA
CTGCCTACTACTCACAGTGAATTTCCGATTTTATGGCTCAATAACTTCTA
CAGAATTTATTGATTGAAATTAACAGTCAaacatagcttcagccaggttt
ctagtCCCCCCCTAACAAAGTAAGGTCCCCCTAATAATTTAGCTCATCCA
AAAAAATGCCTTGTGCTAGGTCCCCTTACTGTAAACACTTGGGGAAAAAA
CAAAAACATTGTTCTCCCGCCCCTGTAGAGAAGTCAATAAAAAATATATG
CAGCTACAGTACTGATAAATGAAAACTCAATTTTACTTGTGTTAATATTT
ATGTTTACAAATCTTTTGGTTTTTATATTTGATTTAAAAGTAAGATAAGA
GATCTTTTGAAATTAGCTGAACAGCCCCCAGAGTCTC Run BLAST on NCBI transcript from alignment at scaffold_15:17041..20327+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048963 ID=TCONS_00048963|Name=TCONS_00048963|organism=Clytia hemisphaerica|type=transcript|length=3287bp|location=Sequence derived from alignment at scaffold_15:17041..20327+ (Clytia hemisphaerica)
GTTACCTTTTCAacataatcttacaatagacagagGGTGAAAGTTTAAAC
AATGCTCAACcgtcaagaaatatttttgctctcagTTTTAACAATTATAA
TCGAAAAGAACATATTGGCGAACAATATGTTTTGCGCACCATAATGTACG
AAACAAAAAACGGGTGCTCTATTacgagaaagaattttcttttggtaaac
aattcccctattGATTCAGGTTGAAAAAGAGAGAAAGTACAGAGGCTGAA
TGCACgtggctttcactttcttttaatcTATGTACTATGActgaatttaa
attgaaaagagaaaGGGATCATAGTATAATCAGGAAAATTGCgtaaaata
taatttgtataatcttacataaatgattttttttttaaataaataaagtt
tcagcgaatgaaagtttgtaaattgcctaaatattttatcatgattagca
caattacgcatgaattaatCTATTTTATGCACTTTGGATCATGAATTGTG
TATCATAGAttgttagatcgtgcatcttaaattacaccaaccagcaaaat
ggcaatgccccaGCCATTCTAATTCGCGTCAGCATAGCCGAATGCCGACG
CAAATGCCGACGCAAATGCCGACgtaaatttgactaaaaattgCTGACGT
AAAAGTGCTTACTGTACTATAAAACCCAGAATTTTTTGCTGACGCAAATA
AATCTGAATTAGAAAGGCTGCCCAAAATATGACAAAGCttgattttccca
aaataatttttgggcaaatttgggcaaaaatcAGTTGTGCAAAATAGTTT
CACTAagtctttttctgatttttggtagaaagatagagttctctaaaaag
tggctggagtgatttttcccgaaaaaaatttaccttgaaatacacatttt
aatttttttcctgatATGTATCTCATGTTATCTCATGATTGGAAGCTGCT
ATGAATCAGTCACCTGATTTACTGGTATTTTACAAACCAGAATCTATTAT
TTACTCACTTACTTCTTCTGACTAGCTCGTGTTTGCAGATGCCAACATTG
AGGGGTTAGGTTTCTTTTTTTCAAGACCTATGTAGAACTCGTCTGCTGAC
CGACCATCAAGCACGTGATCTTTGAGTGTTTTGATTGGTCGGCCTCTTTT
CTTGTTACCGTTGTTGTTGAAAAACAGTCTTTTGACAATGCTGGTGTTCT
TTTGTCTTGCAATATGGCCAAGAAAATTTTGCTGCTGTCATTTGACATAT
TGAAGGATGTCTTCAGTTATGCAAACGCGTAGAACATCTTCACTTGACAT
GACAAAGTGGAAAGTTTGTTCATTGTTTTCATTGATTCTTCTTTCAAAGC
TGCCTATCACCATCTCATGAAGTATATTAACGTAGGTGTATCGGATTATT
AAAGGGTTTTGTTTAATGCTTGATAGCTAAATCAACCTCCCAgccttttt
aaataatatgacaAATTTGGGAAGTGCTATgaacttgttttatttttcag
tctgtttcttattattattgtaatttttcatattttcttattaaatcaat
cttcaggtaggtccattcagcatgtagcttgttctatttgcttttttaaa
atttttaaggttATGTTTAATGTCAGTAATGCTGATTGCTGACTTGAAAT
ATGAGGACTATTTGGTTTGTTTGCATTTCTTGTAggtaaaaaaatgttat
ttggAGGAAAAGTGCTCTGTTTTGTGACAGGTGCTAGTAGTGGATTTGGT
CGCTCAATATCTAGGTTGCTTCTTTGTCAGAATGGTCTGCTATCAAAAGC
TCAAGTGGGCTCTCAAATTATCCTGATGTCAAGAAATCTTGATCAATTGA
AGGAGACTCAGAGGTTAATGGAAGATGGATCTACAAACAGTGAACATTTT
ttaatccaatgtgaaaagctGGATCTTAGCGATACAAATGCTgttgaaat
taaatttcctgATCTGCTTATGTCTTTAACAGGAGAATTTGATCATGTCT
TATTTTTCAATAATGCTGGTTCAATTGCTGATGTTTCTAAACCTATCTTA
GACTATCAATGGAGTATACAGGATTACACAAAATATTTCAACCTATCAAT
TATTTCTTCCATTTACATGATTAATGCCNTAAACCTATCTTAGACTATCA
ATGGAGTATACAGGATTACACAAAATATTTCAACCTATCAATTATTTCTT
CCATTTACATGATTAATGCCATGATTCATAAATTTTCTCTCCATCCCTCA
AAAATTGTAATTATCCAAACATCAAGTCTTGCAGCTGTTCAAGAAATGGC
GTATATGCCATTATATTGTGCTGCAAAAACATCAATGGATATGTTCATAA
AATGTGTTACCAAGGATCATCCCAACATTAAAACATTGAATTATGCTCCA
GGACCTCTAGATACTGCAATGGGACAGGATATGAAAAACAAACATGGCTC
AGATGACACGAGACAGTTTTTTAATCATTTGTTTGAATCTAGAACCATCA
TCAACCCTGATGATTCAGCTGGGAAACTAATGGGTTTGCTGGAAAAAATG
GATTTTGAATCTGGTGCTCACATAGACTACTATGATGTATAATTTTATTT
AGAAGATTAATAAAAGATTAAAGTTATATTTATATGTCAATAATTCAATT
CTTATCATTTACATAAAGACTTTTCGAGGGGCACAGCAATATAAGAAGAG
TCCTTTCTGGAGGAGGGActttaagttttttaatttgCTGTGGTATTGTT
TATCTGTTTAATTAATGATCTTCTCCTATAAAGAATAAAGAGAAAATTCC
AAAATCTTATTATTAGCAATGTTGTtataagaaataagaatttctgtcct
aCTAATAATAGTTTGGGTGGCACTCCACATTGCACTACTCATCATCTGCA
CTGCCTACTACTCACAGTGAATTTCCGATTTTATGGCTCAATAACTTCTA
CAGAATTTATTGATTGAAATTAACAGTCAaacatagcttcagccaggttt
ctagtCCCCCCCTAACAAAGTAAGGTCCCCCTAATAATTTAGCTCATCCA
AAAAAATGCCTTGTGCTAGGTCCCCTTACTGTAAACACTTGGGGAAAAAA
CAAAAACATTGTTCTCCCGCCCCTGTAGAGAAGTCAATAAAAAATATATG
CAGCTACAGTACTGATAAATGAAAACTCAATTTTACTTGTGTTAATATTT
ATGTTTACAAATCTTTTGGTTTTTATATTTGATTTAAAAGTAAGATAAGA
GATCTTTTGAAATTAGCTGAACAGCCCCCAGAGTCTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048963-exon-scaffold_15-1491911889:17041..20327 | TCONS_00048963-exon-scaffold_15-1491911889:17041..20327 | Clytia hemisphaerica | exon |
| TCONS_00048963-exon-scaffold_15-1510915933:17041..20327 | TCONS_00048963-exon-scaffold_15-1510915933:17041..20327 | Clytia hemisphaerica | exon |
| TCONS_00048963-exon-scaffold_15-1575043694:17041..20327 | TCONS_00048963-exon-scaffold_15-1575043694:17041..20327 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| scaffold_15 | supercontig | scaffold_15:17041..20327 + |
Blast
BLAST of TCONS_00048963 vs. Swiss-Prot (Human)
Match: SPRE (Sepiapterin reductase OS=Homo sapiens GN=SPR PE=1 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 1.631e-23 Identity = 60/173 (34.68%), Postives = 91/173 (52.60%), Query Frame = 1
Query: 2071 GLHKIFQPINYFFHLHD*CXKPILDYQWSIQDYTKYFNLSIISSIYMINAMIHKFSLHPS-KIVIIQTSSLAAVQEMAYMPLYCAAKTSMDMFIKCVTKDHPNIKTLNYAPGPLDTAMGQDMKNKHGSDDTRQFFNHLFESRTIINPDDSAGKLMGLLEKMDFESGAHIDYYD 2586
GL ++ IN L D K +D S Q Y+ L++ S + + ++++ F P ++ SSL A+Q LYCA K + DM + + + PN++ LNYAPGPLDT M Q + D R+ L +++ SA KL+ LLEK +F+SGAH+D+YD
Sbjct: 91 GLQRLLL-INNAGSLGD-VSKGFVDLSDSTQ-VNNYWALNLTSMLCLTSSVLKAFPDSPGLNRTVVNISSLCALQPFKGWALYCAGKAARDMLFQVLALEEPNVRVLNYAPGPLDTDMQQLARETSVDPDMRKGLQELKAKGKLVDCKVSAQKLLSLLEKDEFKSGAHVDFYD 260
The following BLAST results are available for this feature:
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