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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048961 ID=TCONS_00048961|Name=TCONS_00048961|organism=Clytia hemisphaerica|type=transcript|length=1194bp
cTGGCAACCTCAAGACCTCCAAAGTGTCATTTTCAAACGAAACATACAGC
AATTTTAATGACAAAGGCTTAAAAAACAGAATGGTCTGCTATCAAAAGCT
CAAGTGGGCTCTCAAATTATCCTGATGTCAAGAAATCTTGATCAATTGAA
GGAGACTCAGAGGTTAATGGAAGATGGATCTACAAACAGTGAACATTTTt
taatccaatgtgaaaagctGGATCTTAGCGATACAAATGCTgttgaaatt
aaatttcctgATCTGCTTATGTCTTTAACAGGAGAATTTGATCATGTCTT
ATTTTTCAATAATGCTGGTTCAATTGCTGATGTTTCTAAACCTATCTTAG
ACTATCAATGGAGTATACAGGATTACACAAAATATTTCAACCTATCAATT
ATTTCTTCCATTTACATGATTAATGCCNTAAACCTATCTTAGACTATCAA
TGGAGTATACAGGATTACACAAAATATTTCAACCTATCAATTATTTCTTC
CATTTACATGATTAATGCCATGATTCATAAATTTTCTCTCCATCCCTCAA
AAATTGTAATTATCCAAACATCAAGTCTTGCAGCTGTTCAAGAAATGGCG
TATATGCCATTATATTGTGCTGCAAAAACATCAATGGATATGTTCATAAA
ATGTGTTACCAAGGATCATCCCAACATTAAAACATTGAATTATGCTCCAG
GACCTCTAGATACTGCAATGGGACAGGATATGAAAAACAAACATGGCTCA
GATGACACGAGACAGTTTTTTAATCATTTGTTTGAATCTAGAACCATCAT
CAACCCTGATGATTCAGCTGGGAAACTAATGGGTTTGCTGGAAAAAATGG
ATTTTGAATCTGGTGCTCACATAGACTACTATGATGTATAATTTTATTTA
GAAGATTAATAAAAGATTAAAGTTATATTTATATGTCAATAATTCAATTC
TTATCATTTACATAAAGACTTTTCGAGGGGCACAGCAATATAAGAAGAGT
CCTTTCTGGAGGAGGGActttaagttttttaatttgCTGTGGTATTGTTT
ATCTGTTTAATTAATGATCTTCTCCTATAAAGAATAAAGAGAAAATTCCA
AAATCTTATTATTAGCAATGTTGTtataagaaataagaatttctgtccta
CTAATAATAGTTTGGGTGGCACTCCACATTGCACTACTCATCAT Run BLAST on NCBI transcript from alignment at scaffold_15:10149..19935+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048961 ID=TCONS_00048961|Name=TCONS_00048961|organism=Clytia hemisphaerica|type=transcript|length=9787bp|location=Sequence derived from alignment at scaffold_15:10149..19935+ (Clytia hemisphaerica)
cTGGCAACCTCAAGACCTCCAAAGTGTCATTTTCAAACGAAACATACAGC
AATTTTAATGACAAAGGCTTAAAAAACAGGTAACAGGAAGAATCCAAATG
TAAGTATGGTGTTGTTAGTTAAATCAGAACAAATTCTCCTAATCATGAAA
GTGTTTGGGGCCATttgccattcaaaaagtacgttcgtcgCCGCGCCGAA
CGTCGTCGAGGagagggggggagggggtcagtAAAAAAGCAAACGAAAAC
AAACAGGGGGGAGGGGgcagaggtgccaactctcacgcattggacGTGAG
ACTCACGCATTCCAACACTGTCTcacgcaatttttcaaaagtttgatttc
tcacgcatttttgatccagacggtactaatcgaacgCTTCGATTACGGAA
GTAATCGAAGAtaatcgaagtaatcgaatgattatttatcgattactgcT
TTCGATGACAGGTAATCGAACGCATTCGATTACAATAATCGAATGCATTC
GATCACTGAAATTTCGTAAATTGGGTGAGTATTCGATTACCCGTTCGATT
ACTTTTCAATGACCCttcgatgacgttcgataacCCTTTGATGACTTCGA
TGACCCTTCGATGACTTCGATGACGTTCGAAAACCCTTCGATGACTTTGA
TAACGCttcgatgacgttcgataacCCTTCAATGACTTTGATTATTGAAA
ATTATTCGATTATCTTCGACAGTCagcaaatccttgcatttgcacggggt
gtGCAGTTTTCCCGACCCTGTGCAATGAGCTAGAACGCGTCAGGCAAATA
Cgtcaatttcaactttaaagtgaaaacgggggaaaatgaagatgagcggg
gctttcattttttctttacgaGATTCTTCATTCGTTAATAAAGAATTGTG
TCCATTGAAAAAAGATTCCacccattcaatcttttttaatcAAGCANNNN
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TAATTTTTCGAAGTACAATCCAATAGTTCCCTTAACAATTAAAAGCGCCA
AAGTTGTAAAATCGTGGCTTTACCCCAGCTATCtgaatttttgcgatttt
ggatTGTAAGGGAACTACTGTATTGTTGAACTTATAATAGGTAAGTACGA
TAGTTTGTTTACTGTGTTTTCGGTGGTTGTACCTGTCAATTTCCATTCTT
CTCAGTCGCTCAGTCTATATACATGCCGATACTAATGTTTTTTGAGCTAC
CAAGTTACCTAAAacggaaaaaaaatattgaaaccttATTTTGTGTAGAA
GAGATACGGGTAAGAACCCAAAAATAGCTGTTGCGTTAAGTATCGAATTA
AAAAGGAGTTGAAATCATATCACGGCCCTGAAATAGACAAAGATTGTGAC
TCAAGTTATAGTCAAAAAcccaagaaaaatgaaagaatcaAGTTGAAAAA
CTCTAGAATCAAAACTATGACTATCATCAGGTTCGAGTCGTCGCTCAGGT
CAGAACGGCAGTCACGTCGCAAAGTAAGAGTAGTGCAAAGGTGCTTCACT
AGAGAACGTGGAGAAGAGTGCAGGGGTTGATTCTCAGGAAATCTTTATTC
TTTATCAATTTTCTGTTTAACTTCTGTGTAATTTTTACACCTTCCTTTCA
ACGCAAAATTAACGCGGTCAACCAGATCAGATCCCACATTCGCAGAACGG
AGCACGGGTGTGTGCAGAATGATCCGTTCCCAGcagacacacaacgttgt
tttaacgtccatctaacgttatatggacgttagataaacgttgaaacaac
gtgccagctgggttattaGAGTACGATTTCGCCCTACCCAGGCTCTCCCG
TGTGCACAGTACAACGTACGGCCTGGTTCgattaaaattttctgttgAAA
TAAACGAGGGAATAAAGAGATCGAAGCCTTCCATGACTAGTCGAAGTAAT
CGAATGGTAATCGAATGGTAATCGAAGTAATCTAATAAATCTTACAAACC
GATAGTATATCGAATTAATCGAAGagtaatcgaattaatcgaagaGTCAT
CGAAGGGTCATCAAACGTTCATCGAACGGTAATCGAAGAAGATGCAGATA
TTCTGAGGCTGGTGAGTATTcgattatttcaaaatttcggcGTAATCGAT
AAGTCATCATTCGATGACGTTCGATTAtattcgattattatcgattacaa
tcgaacgttcggaacattcgattagtaccgtctggtttgatatttgaaag
aaatttccccgattttccgatgATTTTCCGaataaatttccccgattttc
tgatttttgggaaaatttttttcctgattttccgattttcggaataaatt
tccctgattttccgattttttggaaaaatttttctgttttcCGAAGTCGT
AAAACCGGAAAAATTGGGCTAAGATTTTGgattttccttcgaaattttta
tctcatgcCAAATGCAAATGAACATCTTAAGTTGGCAGGTCTGGGGGGTC
AATTCGATCTGTGTACGTTCGCTTTTGCGAGGGGGGGGTGCTTGTCACAA
GCGTGACTTTTAACTTATAGtctatgaaaaatctttttctatctatctcc
taattatatacattttttctttgaatcgaTAACCGCAAAGATAATTGTTA
ATCCCCTAAACAATTGTGTATGTTATAATTGTTTAGCAATTATTAGATAA
TTAGAGAGCAAAAACTTAAGGTGCGATAAGATTAAAGAATNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGATAATGAAAGTTACCTT
TTCAacataatcttacaatagacagagGGTGAAAGTTTAAACAATGCTCA
ACcgtcaagaaatatttttgctctcagTTTTAACAATTATAATCGAAAAG
AACATATTGGCGAACAATATGTTTTGCGCACCATAATGTACGAAACAAAA
AACGGGTGCTCTATTacgagaaagaattttcttttggtaaacaattcccc
tattGATTCAGGTTGAAAAAGAGAGAAAGTACAGAGGCTGAATGCACgtg
gctttcactttcttttaatcTATGTACTATGActgaatttaaattgaaaa
gagaaaGGGATCATAGTATAATCAGGAAAATTGCgtaaaatataatttgt
ataatcttacataaatgattttttttttaaataaataaagtttcagcgaa
tgaaagtttgtaaattgcctaaatattttatcatgattagcacaattacg
catgaattaatCTATTTTATGCACTTTGGATCATGAATTGTGTATCATAG
Attgttagatcgtgcatcttaaattacaccaaccagcaaaatggcaatgc
cccaGCCATTCTAATTCGCGTCAGCATAGCCGAATGCCGACGCAAATGCC
GACGCAAATGCCGACgtaaatttgactaaaaattgCTGACGTAAAAGTGC
TTACTGTACTATAAAACCCAGAATTTTTTGCTGACGCAAATAAATCTGAA
TTAGAAAGGCTGCCCAAAATATGACAAAGCttgattttcccaaaataatt
tttgggcaaatttgggcaaaaatcAGTTGTGCAAAATAGTTTCACTAagt
ctttttctgatttttggtagaaagatagagttctctaaaaagtggctgga
gtgatttttcccgaaaaaaatttaccttgaaatacacattttaatttttt
tcctgatATGTATCTCATGTTATCTCATGATTGGAAGCTGCTATGAATCA
GTCACCTGATTTACTGGTATTTTACAAACCAGAATCTATTATTTACTCAC
TTACTTCTTCTGACTAGCTCGTGTTTGCAGATGCCAACATTGAGGGGTTA
GGTTTCTTTTTTTCAAGACCTATGTAGAACTCGTCTGCTGACCGACCATC
AAGCACGTGATCTTTGAGTGTTTTGATTGGTCGGCCTCTTTTCTTGTTAC
CGTTGTTGTTGAAAAACAGTCTTTTGACAATGCTGGTGTTCTTTTGTCTT
GCAATATGGCCAAGAAAATTTTGCTGCTGTCATTTGACATATTGAAGGAT
GTCTTCAGTTATGCAAACGCGTAGAACATCTTCACTTGACATGACAAAGT
GGAAAGTTTGTTCATTGTTTTCATTGATTCTTCTTTCAAAGCTGCCTATC
ACCATCTCATGAAGTATATTAACGTAGGTGTATCGGATTATTAAAGGGTT
TTGTTTAATGCTTGATAGCTAAATCAACCTCCCAgcctttttaaataata
tgacaAATTTGGGAAGTGCTATgaacttgttttatttttcagtctgtttc
ttattattattgtaatttttcatattttcttattaaatcaatcttcaggt
aggtccattcagcatgtagcttgttctatttgcttttttaaaatttttaa
ggttATGTTTAATGTCAGTAATGCTGATTGCTGACTTGAAATATGAGGAC
TATTTGGTTTGTTTGCATTTCTTGTAggtaaaaaaatgttatttggAGGA
AAAGTGCTCTGTTTTGTGACAGGTGCTAGTAGTGGATTTGGTCGCTCAAT
ATCTAGGTTGCTTCTTTGTCAGAATGGTCTGCTATCAAAAGCTCAAGTGG
GCTCTCAAATTATCCTGATGTCAAGAAATCTTGATCAATTGAAGGAGACT
CAGAGGTTAATGGAAGATGGATCTACAAACAGTGAACATTTTttaatcca
atgtgaaaagctGGATCTTAGCGATACAAATGCTgttgaaattaaatttc
ctgATCTGCTTATGTCTTTAACAGGAGAATTTGATCATGTCTTATTTTTC
AATAATGCTGGTTCAATTGCTGATGTTTCTAAACCTATCTTAGACTATCA
ATGGAGTATACAGGATTACACAAAATATTTCAACCTATCAATTATTTCTT
CCATTTACATGATTAATGCCNTAAACCTATCTTAGACTATCAATGGAGTA
TACAGGATTACACAAAATATTTCAACCTATCAATTATTTCTTCCATTTAC
ATGATTAATGCCATGATTCATAAATTTTCTCTCCATCCCTCAAAAATTGT
AATTATCCAAACATCAAGTCTTGCAGCTGTTCAAGAAATGGCGTATATGC
CATTATATTGTGCTGCAAAAACATCAATGGATATGTTCATAAAATGTGTT
ACCAAGGATCATCCCAACATTAAAACATTGAATTATGCTCCAGGACCTCT
AGATACTGCAATGGGACAGGATATGAAAAACAAACATGGCTCAGATGACA
CGAGACAGTTTTTTAATCATTTGTTTGAATCTAGAACCATCATCAACCCT
GATGATTCAGCTGGGAAACTAATGGGTTTGCTGGAAAAAATGGATTTTGA
ATCTGGTGCTCACATAGACTACTATGATGTATAATTTTATTTAGAAGATT
AATAAAAGATTAAAGTTATATTTATATGTCAATAATTCAATTCTTATCAT
TTACATAAAGACTTTTCGAGGGGCACAGCAATATAAGAAGAGTCCTTTCT
GGAGGAGGGActttaagttttttaatttgCTGTGGTATTGTTTATCTGTT
TAATTAATGATCTTCTCCTATAAAGAATAAAGAGAAAATTCCAAAATCTT
ATTATTAGCAATGTTGTtataagaaataagaatttctgtcctaCTAATAA
TAGTTTGGGTGGCACTCCACATTGCACTACTCATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048961-exon-scaffold_15-1491911889:10149..10227 | TCONS_00048961-exon-scaffold_15-1491911889:10149..10227 | Clytia hemisphaerica | exon |
| TCONS_00048961-exon-scaffold_15-1510915933:10149..10227 | TCONS_00048961-exon-scaffold_15-1510915933:10149..10227 | Clytia hemisphaerica | exon |
| TCONS_00048961-exon-scaffold_15-1575043694:10149..10227 | TCONS_00048961-exon-scaffold_15-1575043694:10149..10227 | Clytia hemisphaerica | exon |
| TCONS_00048961-exon-scaffold_15-1491911889:18821..19935 | TCONS_00048961-exon-scaffold_15-1491911889:18821..19935 | Clytia hemisphaerica | exon |
| TCONS_00048961-exon-scaffold_15-1510915933:18821..19935 | TCONS_00048961-exon-scaffold_15-1510915933:18821..19935 | Clytia hemisphaerica | exon |
| TCONS_00048961-exon-scaffold_15-1575043694:18821..19935 | TCONS_00048961-exon-scaffold_15-1575043694:18821..19935 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:10149..19935 + |
Blast
BLAST of TCONS_00048961 vs. Swiss-Prot (Human)
Match: SPRE (Sepiapterin reductase OS=Homo sapiens GN=SPR PE=1 SV=1) HSP 1 Score: 102.834 bits (255), Expect = 5.677e-25 Identity = 60/173 (34.68%), Postives = 91/173 (52.60%), Query Frame = 1
Query: 370 GLHKIFQPINYFFHLHD*CXKPILDYQWSIQDYTKYFNLSIISSIYMINAMIHKFSLHPS-KIVIIQTSSLAAVQEMAYMPLYCAAKTSMDMFIKCVTKDHPNIKTLNYAPGPLDTAMGQDMKNKHGSDDTRQFFNHLFESRTIINPDDSAGKLMGLLEKMDFESGAHIDYYD 885
GL ++ IN L D K +D S Q Y+ L++ S + + ++++ F P ++ SSL A+Q LYCA K + DM + + + PN++ LNYAPGPLDT M Q + D R+ L +++ SA KL+ LLEK +F+SGAH+D+YD
Sbjct: 91 GLQRLLL-INNAGSLGD-VSKGFVDLSDSTQ-VNNYWALNLTSMLCLTSSVLKAFPDSPGLNRTVVNISSLCALQPFKGWALYCAGKAARDMLFQVLALEEPNVRVLNYAPGPLDTDMQQLARETSVDPDMRKGLQELKAKGKLVDCKVSAQKLLSLLEKDEFKSGAHVDFYD 260
The following BLAST results are available for this feature:
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