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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048932 ID=TCONS_00048932|Name=TCONS_00048932|organism=Clytia hemisphaerica|type=transcript|length=4033bp
CTCTCATGGAATGCGATGTTCAAGAAGAGAGAAATGAGTGGAATACGAAC
TTATTATATACACAGTATAGCTGCATTATTATTCAGTCTTTCAGTACATT
TAATGCCAATCGCAACGAGGAAATAATTAGAGGACAAACACAAATTAATG
GGaggagaaaaatatttgtcccATTGATCTTTTATCCATGGTAACAGTCA
ATTGGCCTTACGTCGTTATTACTGACGTGACtttgcattttatttttaag
agaggagtgataattttcgaaaaaaattataaacagtTATCAAATGGTAT
TTTTGTAATAGTGCTGTTAGATATAAAGTTTGAGTGGTTGAGTGGATGGG
GTTTAACACTTCATCTCTCGTTTGTTTTGGAATTTTATTTCAACAGTTTA
ATCATACTGTACATAGTTTTATCTTTGCTTTGAATGAGACTGAATAAAGT
GTAAAGAAAGATGGACAGCATATTGATGTACAGTATCACCATCTTGATTG
CTCTCTTTTTCACCTCCTTCAACATCCTGACTCTTCTCGTCATTGCATCC
AGCCCAACCTTACGGAAACGACATTCGAGTTTACCAACAATGAGCTTTCT
GGTCGCGTCTGCCCTACAAGGACTCATACCAGCACCATTGTACGTGTACC
GTAAATTAGCTGCACCGGATAATTATCCAGGATGGGCATGTGATTTATAC
CGCTTCCCGTACCTTTTCTGTGGACATATCATGCAGATGAGTATCCTATT
GGTCAGTTTAGATCGCATGATTGCAATCAAGTTTCCATTTCGTTACGAAA
GCAAAAGTGTTCGAAAGACGATGATTCTGGCTATACTGGTGTTATGGATA
GTGACGTTGGCTGTCGATATCGTTCCTTTCTTAAACGGGATCAGGGATGT
AAAAGAAGATTGCTTATTCAATCCAACTCGGTTTTGGGGTTTGAGTGTTA
TTGTGTTTTATAACATGCTACCATTTGTGATGGTCTTGGTCAATTATTCC
ATCATTTGGTGTGTAGCCGTCAAATTCGCTAGTGATGATCGTCAACGACA
AGATTCCATTCGTGAAAGTAATAGGTGCTCAGAAGAAACAGCTTTCGTTA
AACATAAGACTTCGTATGGTGCCATGAAAGCAAACGTCACAAAAACATTG
AGCAATTTGAGGTTCTATCTTGAAATCAAAGCCACAAAGACTTCATTAAT
TTTAATCTGTGTTTACCTGATTTGCTGGGGACCATTGAGTGCATTTTACA
TCTTGGATCACTTTTGTAACGGGTGTTATTCTGaaggaaataaaaacaaa
aatattagaGCGGTTATCAAATTGATAAACTTTAGCTCCAGTCTGTTGGT
GCCATTGTTTTATTGCTGGTGGAATAATGACTACCGAACGACAGCTGGTA
ATTTCCTCAAACGATTTTGTTTGCTGTCAACGGGCAATAAGAAAGTGAGA
AAAAATGGGACTAAGAGGAACACCAGTAATGCTACCCATCATACGGTAGA
CACCAGAATAGAAGAAAGTAACTTCAGTATTTCTTAAACCAAAATGGCGA
CGATGGGAAGAAATATTCTTGGACATTGAAAACTCTAGTCGCCCTGTATC
AATGACCATCGAAACTTTCAACCTTTGCCTTGAGGGCTATTGTCATGATG
TTCGTATGCTCGAGTTAAACTCCACTGTCTCACAGACCCGCTTGGACCCC
AGCCCCACATGAAAATACATTtcatccccggtgggaaaaataccctataa
tttcagccccatcaggaaattgactttgatttcacatccccatttgaaat
tcgatgtttaaaaaattgcactttgaagccattcccactggatttttaaa
gcttggaacaatagaatttctatccccattgagattttgatataattttt
gtatcccgctgtgggaaaaagttccaccagaCAGAAGAGTGTCTGCAATA
ATTATATCTGCTTTGTTTTAGGAAATTAGAGAGGATCAAACATTAGTAAA
TTTAGTATCATATTTATATTCACAAACACTACATTTTCCAACAACTcctt
aatttcaatatttttctccttggaccaaaatctaaaaaaaaattcttcct
aTGTGACTGTGTATTTGTTACAatacatccctgtgtcacaaaaAGTTTAA
CTATGATTTTGTCCGCGgttggaaaaaataccctacaatttctgCCCAGC
TGGTAAATTAACTTTGTTTTAATTAGGATTTAAAGCTCAATGAAAAATTG
CCCTTCAAATCCATTCACATCTTTGAACTGAGAACAATAGACTATCAGTC
CCCATCATTGGGATTTTAATAAAAATCCCCAATGTTGCAGGAAGGAATTA
CGACAGGCTGTCTATAAAACTTCGAAGATTATCGTAGGTTTAGATGCTAT
CAAAATCTTTGCTTTGTCCGGAGGACACGAGGGAGGACATCACCTTTATT
ATAAATGCCTTTTCAATTCTTgctttttacaatattttatactCTTTATA
ACGAATAATAAAATAAACGGTGAATATTTACACAGTGTTAAAGTTATTGC
TNACTCTTTATAACGAATAATAAAATAAACGGTGAATATTTACACAGTGT
TAAAGTTATTGCTTCTTAATATTTCCATATAATAATAATGCCATACATTT
AATTAATATCCTAGATTATATTTTCTACAGTCTGTATTCGTGGGAAGCTT
CAGAGAATTCTCCTTTCCCTTTACACCTGAACATTCGCCTTGCACAATGT
CGAAAGTCTTTGTTCCACCAACAATACACCAATGGTGTCAACAGGCTGGA
TGAAAAAGCTAGAATCTTGACCACTCTTCTTGCAAAGTATTCATTTTCGG
AGATacagtttttacaaaaatgatcAGCCATAAACAGAATACTCATTGGC
AACcagcaaaacaaaaagacagCAGCTATTGCCATGGACTGTTTGGTAGC
TTTGATCTCCAACGTAAATTGAATGGACTTTTGGTAACTTCTCATTGATG
ACGTATGCGTCTTGTTCCCTTCGTCGTCAATTAGGGAAACAGTGACCTGA
TTGCATTGTCTCAAACTCTCCGATCTTCTCCGATCAGCCATTGCAAACCC
ATAAGCTACCTTCCAAATGATAGCATAATTGATAACGACAGTCACAAAAG
GTGCAATATTGTAAAATATGATGACCGATAAACCCCAAGATCTGCCTGGC
ACATATGAACAATTATCGTTACGATTATCATTGAAAAATGGGATGGCATC
GACGCAGATTGTCACAAACCATGCAGATAACAAAACGAAGTTGAAAGTTC
TTCTGGTCAACACTTTGGAATATGTAAAAGGATATCTGATAGCCCACATA
CGTTCACAAGCCAGAATCATGATGCTTATCTCCATAATGtgattgcaaaa
aatgtaaggGAAACGATACAGATCGCACAACCAGCCAGGCTCACTTCCCG
ATTGGTGCACCAGGATTTTGTAGATGTAGAGTGGAGCCGGTAGACCACCT
TGTAGCAAGGAACCAATCAGGAAGCTGATGACGGGTAGGTTGGAGAGGCG
ATGACGTAGTTTTGGCGTGAAGAGGAGCACAAGAAGGGAGAGAATGTTGA
AGAATAACAAAATGATGGCTGTCAACACCACGATTGCAATAATGATCGCT
TGTGCCATGATGTCTTGTTTGAACGCGTGTTATTTGTAGGTCTTCGTTGC
TTCGTTGCTTGCAGTTAATGTATTTCTATCTGAATGAAAACAGAGAATAT
TTGAAAGCTGTGACAGCAAAAATCTCCTAGAAAGAAACTAATACAGCAAG
CCACAATAAACCTCTTTACTAAAACGTTTTGTGTCTCGTCTACACTTTTA
ATCTACAGACAAAACCTTTGAATAAAAAGCCTTCTTAAAACTAAAATCTG
TAAGATTTATTAGATACGAGCACATGCGACGATCTCGAGATTTAACTTAT
TCTTCTTGCCTTAAAACTTTCACTATTTATGCATATCATATTTTCCGCAC
TTTCCACAAAAGAAACGAAAGAAGTAATCGTTT Run BLAST on NCBI protein sequence of TCONS_00048932-protein >TCONS_00048932-protein ID=TCONS_00048932-protein|Name=TCONS_00048932-protein|organism=Clytia hemisphaerica|type=polypeptide|length=358bp
MDSILMYSITILIALFFTSFNILTLLVIASSPTLRKRHSSLPTMSFLVAS
ALQGLIPAPLYVYRKLAAPDNYPGWACDLYRFPYLFCGHIMQMSILLVSL
DRMIAIKFPFRYESKSVRKTMILAILVLWIVTLAVDIVPFLNGIRDVKED
CLFNPTRFWGLSVIVFYNMLPFVMVLVNYSIIWCVAVKFASDDRQRQDSI
RESNRCSEETAFVKHKTSYGAMKANVTKTLSNLRFYLEIKATKTSLILIC
VYLICWGPLSAFYILDHFCNGCYSEGNKNKNIRAVIKLINFSSSLLVPLF
YCWWNNDYRTTAGNFLKRFCLLSTGNKKVRKNGTKRNTSNATHHTVDTRI
EESNFSIS Run BLAST on NCBI transcript from alignment at scaffold_148:285044..289310- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048932 ID=TCONS_00048932|Name=TCONS_00048932|organism=Clytia hemisphaerica|type=transcript|length=4267bp|location=Sequence derived from alignment at scaffold_148:285044..289310- (Clytia hemisphaerica)
CTCTCATGGAATGCGATGTTCAAGAAGAGAGAAATGAGTGGAATACGAAC
TTATTATATACACAGTATAGCTGCATTATTATTCAGTCTTTCAGTACATT
TAATGCCAATCGCAACGAGGAAATAATTAGAGGACAAACACAAATTAATG
GGAGGAGAAAAATATTTGTCCCATTGATCTTTTATCCATGGTAACAGTCA
ATTGGCCTTACGTCGTTATTACTGACGTGACTTTGCATTTTATTTTTAAG
AGAGGAGTGATAATTTTCGAAAAAAATTATAAACAGTTATCAAATGGTAT
TTTTGTAATAGTGCTGTTAGATATAAAGTTTGAGTGGTTGAGTGGATGGG
GTTTAACACTTCATCTCTCGTTTGTTTTGGAATTTTATTTCAACAGTTTA
ATCATACTGTACATAGTTTTATCTTTGCTTTGAATGGTAAGAACGATTAC
ATATGCTTGTATTCGGATTTACCTGGATATCAGGTTATATTGCCGACCCA
AAAAAACTTGCTTTGAGAGTAACTCAGTTTGGAATATTTGGGAAAGGAGC
TCAAATATCACGTCAACTGCTTTTCTTTGAGAAAATATTGGAGCGAAACT
TGCTATACTACTTGTACTTATTTTCTCTCGTTTACAAGATATTTCTAATG
ACATTTTTTTCTTCCTTCAGAGACTGAATAAAGTGTAAAGAAAGATGGAC
AGCATATTGATGTACAGTATCACCATCTTGATTGCTCTCTTTTTCACCTC
CTTCAACATCCTGACTCTTCTCGTCATTGCATCCAGCCCAACCTTACGGA
AACGACATTCGAGTTTACCAACAATGAGCTTTCTGGTCGCGTCTGCCCTA
CAAGGACTCATACCAGCACCATTGTACGTGTACCGTAAATTAGCTGCACC
GGATAATTATCCAGGATGGGCATGTGATTTATACCGCTTCCCGTACCTTT
TCTGTGGACATATCATGCAGATGAGTATCCTATTGGTCAGTTTAGATCGC
ATGATTGCAATCAAGTTTCCATTTCGTTACGAAAGCAAAAGTGTTCGAAA
GACGATGATTCTGGCTATACTGGTGTTATGGATAGTGACGTTGGCTGTCG
ATATCGTTCCTTTCTTAAACGGGATCAGGGATGTAAAAGAAGATTGCTTA
TTCAATCCAACTCGGTTTTGGGGTTTGAGTGTTATTGTGTTTTATAACAT
GCTACCATTTGTGATGGTCTTGGTCAATTATTCCATCATTTGGTGTGTAG
CCGTCAAATTCGCTAGTGATGATCGTCAACGACAAGATTCCATTCGTGAA
AGTAATAGGTGCTCAGAAGAAACAGCTTTCGTTAAACATAAGACTTCGTA
TGGTGCCATGAAAGCAAACGTCACAAAAACATTGAGCAATTTGAGGTTCT
ATCTTGAAATCAAAGCCACAAAGACTTCATTAATTTTAATCTGTGTTTAC
CTGATTTGCTGGGGACCATTGAGTGCATTTTACATCTTGGATCACTTTTG
TAACGGGTGTTATTCTGAAGGAAATAAAAACAAAAATATTAGAGCGGTTA
TCAAATTGATAAACTTTAGCTCCAGTCTGTTGGTGCCATTGTTTTATTGC
TGGTGGAATAATGACTACCGAACGACAGCTGGTAATTTCCTCAAACGATT
TTGTTTGCTGTCAACGGGCAATAAGAAAGTGAGAAAAAATGGGACTAAGA
GGAACACCAGTAATGCTACCCATCATACGGTAGACACCAGAATAGAAGAA
AGTAACTTCAGTATTTCTTAAACCAAAATGGCGACGATGGGAAGAAATAT
TCTTGGACATTGAAAACTCTAGTCGCCCTGTATCAATGACCATCGAAACT
TTCAACCTTTGCCTTGAGGGCTATTGTCATGATGTTCGTATGCTCGAGTT
AAACTCCACTGTCTCACAGACCCGCTTGGACCCCAGCCCCACATGAAAAT
ACATTTCATCCCCGGTGGGAAAAATACCCTATAATTTCAGCCCCATCAGG
AAATTGACTTTGATTTCACATCCCCATTTGAAATTCGATGTTTAAAAAAT
TGCACTTTGAAGCCATTCCCACTGGATTTTTAAAGCTTGGAACAATAGAA
TTTCTATCCCCATTGAGATTTTGATATAATTTTTGTATCCCGCTGTGGGA
AAAAGTTCCACCAGACAGAAGAGTGTCTGCAATAATTATATCTGCTTTGT
TTTAGGAAATTAGAGAGGATCAAACATTAGTAAATTTAGTATCATATTTA
TATTCACAAACACTACATTTTCCAACAACTCCTTAATTTCAATATTTTTC
TCCTTGGACCAAAATCTAAAAAAAAATTCTTCCTATGTGACTGTGTATTT
GTTACAATACATCCCTGTGTCACAAAAAGTTTAACTATGATTTTGTCCGC
GGTTGGAAAAAATACCCTACAATTTCTGCCCAGCTGGTAAATTAACTTTG
TTTTAATTAGGATTTAAAGCTCAATGAAAAATTGCCCTTCAAATCCATTC
ACATCTTTGAACTGAGAACAATAGACTATCAGTCCCCATCATTGGGATTT
TAATAAAAATCCCCAATGTTGCAGGAAGGAATTACGACAGGCTGTCTATA
AAACTTCGAAGATTATCGTAGGTTTAGATGCTATCAAAATCTTTGCTTTG
TCCGGAGGACACGAGGGAGGACATCACCTTTATTATAAATGCCTTTTCAA
TTCTTGCTTTTTACAATATTTTATACTCTTTATAACGAATAATAAAATAA
ACGGTGAATATTTACACAGTGTTAAAGTTATTGCTNACTCTTTATAACGA
ATAATAAAATAAACGGTGAATATTTACACAGTGTTAAAGTTATTGCTTCT
TAATATTTCCATATAATAATAATGCCATACATTTAATTAATATCCTAGAT
TATATTTTCTACAGTCTGTATTCGTGGGAAGCTTCAGAGAATTCTCCTTT
CCCTTTACACCTGAACATTCGCCTTGCACAATGTCGAAAGTCTTTGTTCC
ACCAACAATACACCAATGGTGTCAACAGGCTGGATGAAAAAGCTAGAATC
TTGACCACTCTTCTTGCAAAGTATTCATTTTCGGAGATACAGTTTTTACA
AAAATGATCAGCCATAAACAGAATACTCATTGGCAACCAGCAAAACAAAA
AGACAGCAGCTATTGCCATGGACTGTTTGGTAGCTTTGATCTCCAACGTA
AATTGAATGGACTTTTGGTAACTTCTCATTGATGACGTATGCGTCTTGTT
CCCTTCGTCGTCAATTAGGGAAACAGTGACCTGATTGCATTGTCTCAAAC
TCTCCGATCTTCTCCGATCAGCCATTGCAAACCCATAAGCTACCTTCCAA
ATGATAGCATAATTGATAACGACAGTCACAAAAGGTGCAATATTGTAAAA
TATGATGACCGATAAACCCCAAGATCTGCCTGGCACATATGAACAATTAT
CGTTACGATTATCATTGAAAAATGGGATGGCATCGACGCAGATTGTCACA
AACCATGCAGATAACAAAACGAAGTTGAAAGTTCTTCTGGTCAACACTTT
GGAATATGTAAAAGGATATCTGATAGCCCACATACGTTCACAAGCCAGAA
TCATGATGCTTATCTCCATAATGTGATTGCAAAAAATGTAAGGGAAACGA
TACAGATCGCACAACCAGCCAGGCTCACTTCCCGATTGGTGCACCAGGAT
TTTGTAGATGTAGAGTGGAGCCGGTAGACCACCTTGTAGCAAGGAACCAA
TCAGGAAGCTGATGACGGGTAGGTTGGAGAGGCGATGACGTAGTTTTGGC
GTGAAGAGGAGCACAAGAAGGGAGAGAATGTTGAAGAATAACAAAATGAT
GGCTGTCAACACCACGATTGCAATAATGATCGCTTGTGCCATGATGTCTT
GTTTGAACGCGTGTTATTTGTAGGTCTTCGTTGCTTCGTTGCTTGCAGTT
AATGTATTTCTATCTGAATGAAAACAGAGAATATTTGAAAGCTGTGACAG
CAAAAATCTCCTAGAAAGAAACTAATACAGCAAGCCACAATAAACCTCTT
TACTAAAACGTTTTGTGTCTCGTCTACACTTTTAATCTACAGACAAAACC
TTTGAATAAAAAGCCTTCTTAAAACTAAAATCTGTAAGATTTATTAGATA
CGAGCACATGCGACGATCTCGAGATTTAACTTATTCTTCTTGCCTTAAAA
CTTTCACTATTTATGCATATCATATTTTCCGCACTTTCCACAAAAGAAAC
GAAAGAAGTAATCGTTT Coding sequence (CDS) from alignment at scaffold_148:285044..289310- >TCONS_00048932 ID=TCONS_00048932|Name=TCONS_00048932|organism=Clytia hemisphaerica|type=CDS|length=1077bp|location=Sequence derived from alignment at scaffold_148:285044..289310- (Clytia hemisphaerica)
ATGGACAGCATATTGATGTACAGTATCACCATCTTGATTGCTCTCTTTTT
CACCTCCTTCAACATCCTGACTCTTCTCGTCATTGCATCCAGCCCAACCT
TACGGAAACGACATTCGAGTTTACCAACAATGAGCTTTCTGGTCGCGTCT
GCCCTACAAGGACTCATACCAGCACCATTGTACGTGTACCGTAAATTAGC
TGCACCGGATAATTATCCAGGATGGGCATGTGATTTATACCGCTTCCCGT
ACCTTTTCTGTGGACATATCATGCAGATGAGTATCCTATTGGTCAGTTTA
GATCGCATGATTGCAATCAAGTTTCCATTTCGTTACGAAAGCAAAAGTGT
TCGAAAGACGATGATTCTGGCTATACTGGTGTTATGGATAGTGACGTTGG
CTGTCGATATCGTTCCTTTCTTAAACGGGATCAGGGATGTAAAAGAAGAT
TGCTTATTCAATCCAACTCGGTTTTGGGGTTTGAGTGTTATTGTGTTTTA
TAACATGCTACCATTTGTGATGGTCTTGGTCAATTATTCCATCATTTGGT
GTGTAGCCGTCAAATTCGCTAGTGATGATCGTCAACGACAAGATTCCATT
CGTGAAAGTAATAGGTGCTCAGAAGAAACAGCTTTCGTTAAACATAAGAC
TTCGTATGGTGCCATGAAAGCAAACGTCACAAAAACATTGAGCAATTTGA
GGTTCTATCTTGAAATCAAAGCCACAAAGACTTCATTAATTTTAATCTGT
GTTTACCTGATTTGCTGGGGACCATTGAGTGCATTTTACATCTTGGATCA
CTTTTGTAACGGGTGTTATTCTGAAGGAAATAAAAACAAAAATATTAGAG
CGGTTATCAAATTGATAAACTTTAGCTCCAGTCTGTTGGTGCCATTGTTT
TATTGCTGGTGGAATAATGACTACCGAACGACAGCTGGTAATTTCCTCAA
ACGATTTTGTTTGCTGTCAACGGGCAATAAGAAAGTGAGAAAAAATGGGA
CTAAGAGGAACACCAGTAATGCTACCCATCATACGGTAGACACCAGAATA
GAAGAAAGTAACTTCAGTATTTCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048932-exon-scaffold_148-1575043694:288875..289310 | TCONS_00048932-exon-scaffold_148-1575043694:288875..289310 | Clytia hemisphaerica | exon |
| TCONS_00048932-exon-scaffold_148-1575043694:285044..288640 | TCONS_00048932-exon-scaffold_148-1575043694:285044..288640 | Clytia hemisphaerica | exon |
| TCONS_00048932-exon-scaffold_148-1510915933:288875..289310 | TCONS_00048932-exon-scaffold_148-1510915933:288875..289310 | Clytia hemisphaerica | exon |
| TCONS_00048932-exon-scaffold_148-1510915933:285044..288640 | TCONS_00048932-exon-scaffold_148-1510915933:285044..288640 | Clytia hemisphaerica | exon |
| TCONS_00048932-exon-scaffold_148-1491911889:288875..289310 | TCONS_00048932-exon-scaffold_148-1491911889:288875..289310 | Clytia hemisphaerica | exon |
| TCONS_00048932-exon-scaffold_148-1491911889:285044..288640 | TCONS_00048932-exon-scaffold_148-1491911889:285044..288640 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_148 | supercontig | scaffold_148:285044..289310 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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