TCONS_00048928 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048928
Unique NameTCONS_00048928
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1921

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048928 ID=TCONS_00048928|Name=TCONS_00048928|organism=Clytia hemisphaerica|type=transcript|length=1921bp
AGTAGCACTGGAAAGTCGTGACAAGAAAGAACCCTCATTTTTTGTTTTAG
GGCGTTTTTGCAGCCAACGTTGCGTAGGAGCGTATGCAAGCAAGCGGCGA
ACACAATTGATTCAACAGCAACTGGAAAGCGGTGAACGTCCACCCACCAA
ACAAACCAATAAAAAGAGTGGTGTCAAGAAAAAGAAGACGGAATCGAAGG
ATGGCACTCCATCGTCACCTTCcctcaacaaaaacaaaaaacaaatcaaa
caagaGATAAAAGATGACTCCATATTATACTTTCAGACTGTTGGTCATCA
TACAGGATTCTGTTGGGAAACTTATTTGCAAATCACTGCAACAAAATCTG
TTCCCGTTGAAGCCTTTTTCAAAGAATATGATGAACAAGAAATTCTACCA
CAAAGCACGACCAATCAATTTGAACAAGGGATGAAATTAGAGTGCATTGA
CCCCAAACACCAATCGATCATATGTTGTTGTACAGTGGTGGAGGTGCAGG
GCGCACGGCTGCGCTTGAACTTCGATGGTTGGCCAGCCAATTACGATTTC
TGGATCAACTCTAACTCTTTCTTTTTGCATCCTTGCGGATGGTGcagtaa
aaatcaacaaaaattacAGCCTCCTAAAGaCATCGATCCCAAAGATTTTG
AATGGAGCACCTACCTCATGAAAACACAGAGTAAAGCCGCCCCCGCGAAC
CTTTTTTTCGACACACCACCTGTATCTCGACATGCATTTCGCATCTCCAT
GAAACTAGAAGCTATCGATCGAAAGAACCCTGACTTAGTGTGTGTCGCAT
CCGTAGCGAATACTATAGGAGATCAGATTCTGATCCATTTTGATGAATGG
GACGATTTATACGATTACTGGTGTCGTGAAGATAACCCTTACATTCACCC
CATGGGATGGTGTCAGAAAAATCAAATCGCCCTCGTCCCACCTACAGATG
AAATGGTTGGCAAATTTGTATGGAAAGATTATCTGAATGACAGTGACTGT
ATCGCTGCCCCTGATGAGGTGTTTAAAGAGCCAAAAAAGCTATTATTCGT
TATTGGAGATAAAATGGAAGTCATCGATCCACGCAACCCTACACTTTGTC
GCGTAGCAACTGTCAACCGGGCAGAGGATTTCAAAGTGCAAATTCATTTT
GATGGCTGGCCAAGCATGTATGATTGGTGGTTCGATTTTGATTCCATGGA
CTTGCATCCAGTGGGATGGTGTCAGAAGACTGGTCATGTGTTGGAACCAC
CTCCTTCGGGGCAAGATGCGACATCGCCATGTGGTATCCAAGGATGTCGC
GGTGTCGGGCACATCAAAGGCGCCAAATACACAACACATCACACTTCTTT
TGGCTGCCCATACACCTCACAAAACATCCACCGCACCACTTCTCCTGTCG
TGGATCGCCTGGTGATGGATTCTGAAGAAGTATTCGCTGGCTCAACACCT
TCCAATAAATCGAATGAAAATAGCCCTACTTCCACAGtTTTCCCTGATTC
AACAACAAATTACAAAAACATGGTAAAATCTAAAAAGGCTAAAGACAAAT
CGAACAAGGGAATGAATCGCAAACGGAAAAGAAGGGGAAGTGATGAAGTT
TCATCTTCCACCAATTTTCTGCACGAAGAACGAATAACAAAACATGAATA
CTCTCCTATGGACATCCCCAAAAAGATACGATCTACACATATCCCTGCTG
GTCTTTATGGCAGAAATACCTACTTTGAAAGGAAAAGCCAAGCGATTCCG
TGGAATACACAAGAAGTTGGTGAATTTTTATCTCGTATCGGTTATGCAGA
ATACGTACCCATCTTTAAAGATAATCAAATTGATGGTCAAGCATTGCTCT
TGTTAAGTCAAGCTGATCTTGTCCATCACCTCAATCTCAAACTTGGTCCA
GCTCTCAAAATCTATAGTGAA
Run BLAST on NCBI

transcript from alignment at scaffold_148:208036..214623-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048928 ID=TCONS_00048928|Name=TCONS_00048928|organism=Clytia hemisphaerica|type=transcript|length=6588bp|location=Sequence derived from alignment at scaffold_148:208036..214623- (Clytia hemisphaerica)
AGTAGCACTGGAAAGTCGTGACAAGAAAGAACCCTCATTTTTTGTTTTAG GGCGTTTTTGCAGCCAACGTTGCGTAGGAGCGTATGCAAGCAAGCGGCGA ACACAATTGATTCAACAGCAACTGGAAAGCGGTGAACGTCCACCCACCAA ACAAACCAATAAAAAGAGTGGTGTCAAGAAAAAGAAGACGGAATCGAAGG TATTTTGTCGCATTTCTCCCTATGGGAAGTCAATGCCAATGGATCTACGA TACAGGAGATTATGCAACTGATTCAAACTTTTGTACCTCACTTACCTGTA TTTATATCGACCCTGCTGGTTTTATTTTTCTTGCGTCGACAGCGATATCT GCATATCTTACAGGTGCCAAGGTTGGAGGTTGCTTTCATTTTAACACTTA GATTTGATTTTATTCAGGATGGCACTCCATCGTCACCTTCCCTCAACAAA AACAAAAAACAAATCAAACAAGAGATAAAAGATGACTCCATATTATACTT TCAGACTGGTGAGTATGTTTTCCCTTATTCTTTTTTTTTGTCGATCGTTT TATTGAAAACTTGACCACTATAGTTAAAAGCGAAAGTTTTCCATGATTTC CCTCAAAATTCCTCAAATATTTTGGTGAGACTGCTATTGTATTTTCTATA AATTTTGAAGGACTTCAGAGAAAGTCGAGCTTCAAGATGACTCAAGAGGA TTGGATAGTATAATTTATGATAAAATGACACAGAAAGGATTTATTTGTTT TATCTTTAGTTGGTCATCATACAGGATTCTGTTGGGAAACTTATTTGCAA ATCACTGCAACAAAATCTGTTCCCGTTGAAGCCTTTTTCAAAGTAAGTGC ATACAGTCAGAATTGTGATTACCATGCTTTTGTATATTCAATATCAAGCC TCCCTAATTTAAATGATACTGATAAGTGTTTAATTTAAACTTCTGTTTGC CATCAAGGAGTAAACCTCACAAAATACTCTGTATAATAATTCAATAGATC GAATTCGCTCCGAAATTGCCAAACTTGACTTTTCTTTCCGCTTTCTGTAG GAATATGATGAACAAGAAATTCTACCACAAAGCACGACCAATCAATTTGA ACAAGGGATGAAATTAGAGTGCATTGACCCCAAACACCAATCGATCATAT GTTGTTGTACAGTGGTGGAGGTGCAGGGCGCACGGCTGCGCTTGAACTTC GATGGTTGGCCAGCCAATTACGATTTCTGGATCAACTCTAACTCTTTCTT TTTGCATCCTTGCGGATGGTGCAGTAAAAATCAACAAAAATTACAGCCTC CTAAAGGTAATGGTGAGCGGTATTAATATTGAAAATTTCTGGTGACATCT TTTTTTGTGAACTTCGAATGAGAAAGGCTTTTCTTGCTCGCTGGCTCCAA AAAATCTGATGTATCTCAGAAGTAAACTCTCAAAATTTCTTTTAGACATC GATCCCAAAGATTTTGAATGGAGCACCTACCTCATGAAAACACAGAGTAA AGCCGCCCCCGCGAACCTTTTTTTCGACACACCACCTGTATCTCGACATG CATTTCGCATCTCCATGAAACTAGAAGCTATCGATCGAAAGAACCCTGAC TTAGTGTGTGTCGCATCCGTAGCGAATACTATAGGAGATCAGATTCTGAT CCATTTTGATGAATGGGACGATTTATACGATTACTGGTGTCGTGAAGATA ACCCTTACATTCACCCCATGGGATGGTGTCAGAAAAATCAAATCGCCCTC GTCCCACCTACAGGTAAGACTCGTGGAGTAGTATCCATGGCAACTTTCAA ACTCTTACATCTTGTATCTTCTACGCAACGTTGAAACTTTCTGAGATATC AAACTAAACAGTTGTAGAGTGACCAGTTGTCCTATATAGGCCTGCTGAAC ATCAGTCAATGATGAGCTTTGCTGTTAAAAACTGAATGCTACTAAAGAGA TTGTTTTAAGTCTGTCAAAGTGCACCAGAATAAACATAATAGGGATCATC CTTCGCAAACCAAAAAGGAATTTACCGAATTTTCCCCATTATCAGCAGTT CATTGCATTACTGTTTCTTGTAGATGAAATGGTTGGCAAATTTGTATGGA AAGATTATCTGAATGACAGTGACTGTATCGCTGCCCCTGATGAGGTGTTT AAAGAGGTAACATTATACTCACAAAATCTAATTCCGATGCTTTGAACAAG TAACTTTTGTACTATTATTATTGTGACTTTGTGTTCACTTTTCATAAACT CNTAACTTTTGTACTAGTATTATTGTGACTTTGTGTTCACTTTTCATAAA CTCTCTTTTCTATCTTTCAACGTGTAGCCAAAAAAGCTATTATTCGTTAT TGGAGATAAAATGGAAGTCATCGATCCACGCAACCCTACACTTTGTCGCG TAGCAACTGTCAACCGGGCAGAGGATTTCAAAGTGCAAATTCATTTTGAT GGCTGGCCAAGCATGTATGATTGGTGGTTCGATTTTGATTCCATGGACTT GCATCCAGTGGGATGGTGTCAGAAGACTGGTCATGTGTTGGAACCACCTC CTTGTAAGTTCTTCCTTTTATCTATTTTCCGATCGGTTTGCTTTTTATTT TTGCCAAAAATATTATTTTCAAAAATTAGTCGAGTATGGCAGGCTTTTGG CATGGTATGGTTTAAACTTGATAGCAATATGAAAAGAGTTCTAGCCTCAA ATTTCATTCAATTTCACTTTTCCATCGGAAGAGAAAATTACTTTCAAAAT GGTTTACAAGACGAGATCAAAAGAATCAAGGATTTTTAAAGATTTCTAGN AGCCTCAAATTTCATTCAATTTCACTTTTCCATCGGAAGAGAAAATTACT TTCAAAATGGTTTACAAGACGAGATCAAAAGAATCAAGTACTTTTAAAGA TTTCTAGGGAATTATGAAACTTTTGAAATGTTACCACTCTTTTCTATGTT TTGTTGTGTATCTCAGCGGGGCAAGATGCGACATCGCCATGTGGTATCCA AGGATGTCGCGGTGTCGGGCACATCAAAGGCGCCAAATACACAACACATC ACACTTCTTTTGGCTGCCCATACACCTCACAAAACATCCACCGCACCACT TCTCCTGTCGTGGATCGCCTGGTGATGGATTCTGAAGAAGTATTCGCTGG CTCAACACCTTCCAATAAATCGAATGAAAATAGCCCTACTTCCACAGGTG AGTCATCCCTTTCAGGTTTACTGATTTAAAGTGGGTTGTGATATGGTTAT TTATTTCTTTACCCGTAATGTCAATATCATGTCCGAGTCTCAATGTCTCT TGATCTTGAACACTATGATTATTCCCCAACTAGAATCTCCAAATATTTGA ATCAAAGGAAAAATGATAGTCGTCGTGAGGAGAATCTTTAAAAAACATTT TCTTTTCTCTTTTTCAGTTTTCCCTGATTCAACAACAAATTACAAGTAAG TAAATCTCCTGCACCTCACCACTAGAAAGAAGTGATGATCCATCTCAGAT CTCGCATTATTTCCAACAAGAATCGAAAATGAAAAAAGCATGATCAGATG TTTCTATTAAGTTATTACTTCTATCAGTGAAGGTAGCGATGCGCAGTAGT TTAAAGGCCATGTTTCCCACTCGGCGCTATGATGGTGCTGGTAAATGAGT GTTAACTCACCTGGGCCAACCCATGTCATTTGAGGGGAATTTGGTACAAT ACTCTGATACACGAGTGTGGGTGGGGAAGTATGCCAGACATTGGGGTTGT TATAATGACCAACATAGACAAAAACTTGTAAGATACATCATGGCTCTTAT GTCACGAGCACAGGATCAACAATATCCGCTAAGGGAAATGATTTCTCTAC CCAACTGTTCCGTAACTGGTCCTTGCCGTTCGCGTTGGCGAAGTTATTAT TATAATGTTTAAGGCTTTTGAAATTTCCCTTATCTATTTCTTTTCCAGAA ACATGGTAAAATCTAAAAAGGCTAAAGACAAATCGAACAAGTAAGGATGT GACTTCATCACCGATGATTTTTCATTTAGTTGCAATTTCTGTACATTTTT GTCCAGTCAACTCTCTCTATCTTATGTTTTCAAAGATGAAATATCCCCAG ATTAACTAATTGTTGTCGATTTTCAACGTGGAGCATAAATGTTCACCGTA AATGAAAGCATTTCATTGGACAAGAGTTTCATTTTTTTAGGGGAATGAAT CGCAAACGGAAAAGAAGGGGAAGTGATGAAGTTTCATCTTGTAAGTATTC CCTTTCGTGGGCTGTTGAAAACATCAATGTGATTGCATTTATTTAGAATT TTTCAAAGTGAATTTTGATTTCAAAACCTCTATCTTGAGAACAACCAGGA AGGCAAGATTGTTGGCTGACATTCCTCAGGGCTAGGTGCTTCGGGCTTTC AAAAGTGTACTTTAGGATTGTTGAAATAAAACGCTCTAAAGTGGAAAGAT TTTTTGTGTGGACTTTATTTTGCTAAATTTTCGCTTCGAGAATACAGTTG TTTCAAGATTTGTTTATGCTCCTTTTTTGGCTATACCCGATACTTTTAAC AGACTGCTGTCTCTTTGACCGGGAAATATTTTTCCAGGAATCAATTCTCA AGAGCTACCACGTGAAAAGGATAAACTGAAATAACACAGCCCGTCAACAC TGACGCAGTAACACTTTTATTCAGTCACATTCTCAATGTGGGAAGGGGAT CTGATCGCTGTACAAGATTGCTGAAATTCTAATCTTTTTAAACTGATGAA AACTANTCTATCAGTGAAGGTAGCGATGCGCAGTAGTTTAAAGGCCAGGT TTCCCACTCGGCGCTATGATGGTGCTGGTAAATGAATGTTAACTCACCTG GGCCAACCCATGTCATTTGAGGGGAATTTGGTACAATACTCTGATACACG AGTGTGGGTGGGGAAGTATGCCAGACATTGGGGTTGTTATAATGACCAAC ATAGACAAAAACTTGTAAGATACATCATGGCTCTTATGTCACGAGCACAG GATCAACAATATCCGCTAAGGGAAATGATTTCTCTACCCAACTGTTCCGT AACTGGTCCTTGCCGTTCGCGTTGGCGAAGTTATTATTATAATGTTTAAG GCTTTTGAAATTTCCCTTATCTATTTCTTTTCCAGAAACATGGTAAAATC TAAAAAGGCTAAAGACAAATCGAACAAGTAAGGATGTGACTTCATCACCG ATGATTTTTCATTTAGTTGCAATTTCTGTACATTTTTGTCCAGTCAACTC TCTCTATCTTATGTTTTCAAAGATGAAATATCCCCAGATTAACTAATTGT TGTCGATTTTCAACGTGGAGCATAAATGTTCACGGTAAATGAAAGCATTT CATTGGACAAGAGTTTCATTATTTTAGGGGGATGAATCGCAAACGGAAAA GAAGGGGAAGTGATGAAGTTTCATCTTGTAAGTATTCCCTTTCGTGGGCT GTTGAAAACATCAATGTGATTGCATTTATTTAGAATTTTTCAAAGTGAAT TTTGATTTCAAAACCTCTATCTTGAGAACAACCAGGAAGGCAAGATTGTT GGCTGACATTCCTCAGGGCTAGGTGCTTCGGGCTTTCAAAAGTGTACTTT AGGATTGTTGAAATAAAACGCTCTAAAGTGGAAAGATTTTTTGTGTGGAC TTTATTTTGCTAAATTTTCGCTTCGAGAATACAGTTGTTTCAAGATTTGT TTATGCTCCTTTTTTGGCTATACCCGATACTTTTAACAGACTGCTGTCTC TTTGACCGGGAAATATTTTTCCAGGAATCAATTCTCAAGAGCTACCACGT GAAAAGGATAAACTGAAATAACACAGCCCGTCAACACTGACGCAGTAACA CTTTTATTCAGTCACATTCTCAATGTGGGAAGGGGATCTGATCGCTGTAC AAGATTGCTGAAATTCTAATCTTTTTAAACTGATGAAAACTACAATGGAA TTTTATTTATTCTTTTTAGCCACCAATTTTCTGCACGAAGAACGAATAAC AAAACATGAATACTCTCCTATGGACATCCCCAAAAAGATACGATCTACAC ATATCCCTGCTGGTCTTTATGGCAGAAATACCTACTTTGAAAGGAAAAGC CAAGCGATTCCGTGGAATACACAAGAAGTTGGTGAATTTTTATCTCGTAT CGGTTATGCAGAATACGTACCCATCTTTAAAGATAATGTAAGTTTTTCCT GTTTCCCGTTTCCTTGGCGCATGTTTTATAGCTCCCATAGGTCTCTTACA TTGCCTCTGTCCGAAAATGACATGTGGTATGTTTTGGCTATAGTGAGTTC CATTGGAAGAAGATAGGGACTATGGTTGGCAAGTTTACGTCATCTCCTAC GATTCTACAAAACCGCCCGTGCTATAATAAGTTGCACGAATCCTTTAGAG GAAGCCAGCGGCCTACGCACATGTAAGATTCGTTGACCCCGAGCCGTTTT ACACGACTCAGCATATTGAGCTTGCTACCTCTCTTTTTTTAGCAAATTGA TGGTCAAGCATTGCTCTTGTTAAGTCAAGCTGATCTTGTCCATCACCTCA ATCTCAAACTTGGTCCAGCTCTCAAAATCTATAGTGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031078XLOC_031078Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048928-exon-scaffold_148-1575043694:214425..214623TCONS_00048928-exon-scaffold_148-1575043694:214425..214623Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1575043694:214116..214206TCONS_00048928-exon-scaffold_148-1575043694:214116..214206Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1575043694:213782..213864TCONS_00048928-exon-scaffold_148-1575043694:213782..213864Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1575043694:213318..213573TCONS_00048928-exon-scaffold_148-1575043694:213318..213573Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1575043694:212861..213178TCONS_00048928-exon-scaffold_148-1575043694:212861..213178Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1575043694:212468..212550TCONS_00048928-exon-scaffold_148-1575043694:212468..212550Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1575043694:212071..212296TCONS_00048928-exon-scaffold_148-1575043694:212071..212296Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1575043694:211427..211657TCONS_00048928-exon-scaffold_148-1575043694:211427..211657Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1575043694:211179..211206TCONS_00048928-exon-scaffold_148-1575043694:211179..211206Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1575043694:210634..210675TCONS_00048928-exon-scaffold_148-1575043694:210634..210675Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1575043694:210384..210433TCONS_00048928-exon-scaffold_148-1575043694:210384..210433Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1575043694:208437..208654TCONS_00048928-exon-scaffold_148-1575043694:208437..208654Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1575043694:208036..208131TCONS_00048928-exon-scaffold_148-1575043694:208036..208131Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1510915933:214425..214623TCONS_00048928-exon-scaffold_148-1510915933:214425..214623Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1510915933:214116..214206TCONS_00048928-exon-scaffold_148-1510915933:214116..214206Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1510915933:213782..213864TCONS_00048928-exon-scaffold_148-1510915933:213782..213864Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1510915933:213318..213573TCONS_00048928-exon-scaffold_148-1510915933:213318..213573Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1510915933:212861..213178TCONS_00048928-exon-scaffold_148-1510915933:212861..213178Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1510915933:212468..212550TCONS_00048928-exon-scaffold_148-1510915933:212468..212550Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1510915933:212071..212296TCONS_00048928-exon-scaffold_148-1510915933:212071..212296Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1510915933:211427..211657TCONS_00048928-exon-scaffold_148-1510915933:211427..211657Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1510915933:211179..211206TCONS_00048928-exon-scaffold_148-1510915933:211179..211206Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1510915933:210634..210675TCONS_00048928-exon-scaffold_148-1510915933:210634..210675Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1510915933:210384..210433TCONS_00048928-exon-scaffold_148-1510915933:210384..210433Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1510915933:208437..208654TCONS_00048928-exon-scaffold_148-1510915933:208437..208654Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1510915933:208036..208131TCONS_00048928-exon-scaffold_148-1510915933:208036..208131Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1491911889:214425..214623TCONS_00048928-exon-scaffold_148-1491911889:214425..214623Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1491911889:214116..214206TCONS_00048928-exon-scaffold_148-1491911889:214116..214206Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1491911889:213782..213864TCONS_00048928-exon-scaffold_148-1491911889:213782..213864Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1491911889:213318..213573TCONS_00048928-exon-scaffold_148-1491911889:213318..213573Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1491911889:212861..213178TCONS_00048928-exon-scaffold_148-1491911889:212861..213178Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1491911889:212468..212550TCONS_00048928-exon-scaffold_148-1491911889:212468..212550Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1491911889:212071..212296TCONS_00048928-exon-scaffold_148-1491911889:212071..212296Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1491911889:211427..211657TCONS_00048928-exon-scaffold_148-1491911889:211427..211657Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1491911889:211179..211206TCONS_00048928-exon-scaffold_148-1491911889:211179..211206Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1491911889:210634..210675TCONS_00048928-exon-scaffold_148-1491911889:210634..210675Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1491911889:210384..210433TCONS_00048928-exon-scaffold_148-1491911889:210384..210433Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1491911889:208437..208654TCONS_00048928-exon-scaffold_148-1491911889:208437..208654Clytia hemisphaericaexon
TCONS_00048928-exon-scaffold_148-1491911889:208036..208131TCONS_00048928-exon-scaffold_148-1491911889:208036..208131Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_148supercontigscaffold_148:208036..214623 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00701146 2.47248 1.2114 0 2.11784 2.70304 9.10481 11.7091 4.831 6.73771 6.86335 4.46196 3.97208 3.38487 0 1.22635 3.74707 2.04245 0.0969496 1.25359 0.0461434 0.000525363 0.509668 0.0563499 5.10051 7.61682 0.584711 0 3.4314 0.00111116
Blast
BLAST of TCONS_00048928 vs. Swiss-Prot (Human)
Match: LMBL3 (Lethal(3)malignant brain tumor-like protein 3 OS=Homo sapiens GN=L3MBTL3 PE=1 SV=2)

HSP 1 Score: 380.948 bits (977), Expect = 9.725e-121
Identity = 209/561 (37.25%), Postives = 308/561 (54.90%), Query Frame = 2
Query:  305 GFCWETYLQITATKSVPVEAFFKEYDEQEILPQSTTNQFEQGMKLECIDPKHQSIICCCTVVEVQGARLRLNFDGWPANYDFWINSNSFFLHPCGWCSKNQQKLQPPKDIDPKDFEWSTYLMKTQSKAAPANLFFD-TPPVSRHAFRISMKLEAIDRKNPDLVCVASVANTIGDQILIHFDEWDDLYDYWCREDNPYIHPMGWCQKNQIALV-PPTDEMVGKFVWKDYLNDSDCIAAPDEVFKEPKKLLFVIGDKMEVIDPRNPTLCRVATVNRAEDFKVQIHFDGWPSMYDWWFDFDSMDLHPVGWCQKTGHVLEPPPSGQDATSP-----CGIQGCRGVGHIKGAKYTTHHTSFGCPYTSQNIHRTTSPVVDRLVMDSEEVFAGSTPSNKSNENSPTSTVFPDSTTNYXXXXXXXXXXXXXXXXXXXXXXXXXXDEVSSSTNFLHEERITKHEYSPMDIPKKIRST---HIPAGLYGRNTYFERKSQAIP------------WNTQEVGEFLSRI-GYAEYVPIFKDNQIDGQALLLLSQADLVHHLNLKLGPALKIYS 1918
             +CW +YL+     +VP + F     E +  P +  N F+ GMKLE +DP+HQS+ C  TV EV G R++L+FDG+   YDFW+N+++  +HP GWC K   KL PPK    ++F W TYL   +++AAP +LF +    V    FR+ MKLEA+D+KNP  +CVA+V + + ++ L+HFD WD+ YDYWC   +P+IHP+GWC++++  L+ PP    V  F W  YL +++ + AP   FK      F    K+EV+D RNP   RVATV   +D +V++HFDGW + YD+W D DS D+HPVGWC KTGH L+PP S  +         C   GC+G+GH K A++   H++  CPY+  N+++      DR+            P   S E  P S  FP    N +       +  +         K    +   S     HE R  + E  P     + RS       + +      +E++S+ +P            W+T EV EF+  + G  E+  +FKD QIDG+A LL++Q D+V  +++KLGPALKI++
Sbjct:  231 AWCWASYLEEEKAVAVPAKLF----KEHQSFPYNK-NGFKVGMKLEGVDPEHQSVYCVLTVAEVCGYRIKLHFDGYSDCYDFWVNADALDIHPVGWCEKTGHKLHPPKGYKEEEFNWQTYLKTCKAQAAPKSLFENQNITVIPSGFRVGMKLEAVDKKNPSFICVATVTDMVDNRFLVHFDNWDESYDYWCEASSPHIHPVGWCKEHRRTLITPPGYPNVKHFSWDKYLEETNSLPAPARAFKVKPPHGFQKKMKLEVVDKRNPMFIRVATVADTDDHRVKVHFDGWNNCYDYWIDADSPDIHPVGWCSKTGHPLQPPLSPLELMEASEHGGCSTPGCKGIGHFKRARHLGPHSAANCPYSEINLNK------DRIF-----------PDRLSGEMPPASPSFP---RNKRTDANESSSSPEIRDQHADDVKEDFEERTESEMRTSHEARGAREE--PTVQQAQRRSAVFLSFKSPIPCLPLRWEQQSKLLPTVAGIPASKVSKWSTDEVSEFIQSLPGCEEHGKVFKDEQIDGEAFLLMTQTDIVKIMSIKLGPALKIFN 764          
The following BLAST results are available for this feature:
BLAST of TCONS_00048928 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LMBL39.725e-12137.25Lethal(3)malignant brain tumor-like protein 3 OS=H... [more]
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