|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048921 ID=TCONS_00048921|Name=TCONS_00048921|organism=Clytia hemisphaerica|type=transcript|length=1858bpRun BLAST on NCBI protein sequence of TCONS_00048921-protein >TCONS_00048921-protein ID=TCONS_00048921-protein|Name=TCONS_00048921-protein|organism=Clytia hemisphaerica|type=polypeptide|length=466bp MAATGLSRSLRSCLCFTGKNLARTNSRDYNALSSSLPALSAAHQRHNPTIRun BLAST on NCBI transcript from alignment at scaffold_148:172085..194740- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048921 ID=TCONS_00048921|Name=TCONS_00048921|organism=Clytia hemisphaerica|type=transcript|length=22656bp|location=Sequence derived from alignment at scaffold_148:172085..194740- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_148:172085..194740- >TCONS_00048921 ID=TCONS_00048921|Name=TCONS_00048921|organism=Clytia hemisphaerica|type=CDS|length=16812bp|location=Sequence derived from alignment at scaffold_148:172085..194740- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00048921 vs. Swiss-Prot (Human)
Match: SUCB1 (Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial OS=Homo sapiens GN=SUCLA2 PE=1 SV=3) HSP 1 Score: 575.474 bits (1482), Expect = 0.000e+0 Identity = 267/413 (64.65%), Postives = 350/413 (84.75%), Query Frame = 1
Query: 448 RNLAVHEYIALDILRKAGITVPRGGVARTPDEASKIAKSLETHDFVVKAQVLAGGRGKGTFDSGLKGGVKIVYSPEEVEDVSSKMLGNKLHTIQTGTVGRPCNEVLIVERLYPRREYYFAITLDRAAKGPLLIASSQGGMSIEDVARENPDAIIRQPVDIYKGLDRETAINFAERVGFPGSNKEAAADLFLKLYDVFLQNDCTLLEINPFTELNDGGVLCMDAKLNFDDNSLYRHKEIAELKDWSQEDPREVEATQHDLNYIGLDGSIGCLVNGAGLAMATMDIIKLHGGSPANFLDVGGGATAEAVTSAFRLISSDHNVKAILVNIFGGIMKCDVIAEGIIEAAKTLNLNIPLVVRLQGTNVEDAKALIANSGMRILPCDDLEDAAKMVVKLADIVSLAHEASLNVSFKLPI 1686
RNL++HEY+++++L++AG++VP+G VA++PDEA IAK L + D V+KAQVLAGGRGKGTF+SGLKGGVKIV+SPEE + VSS+M+G KL T QTG GR CN+VL+ ER YPRREYYFAIT++R+ +GP+LI SS GG++IEDVA E+P+AII++P+DI +G+ +E A+ A+++GFP + E+AA+ +KLY +FL+ D T++EINP E +DG VLCMDAK+NFD NS YR K+I +L+DW+QED R+ +A + +LNYIGLDG+IGCLVNGAGLAMATMDIIKLHGG+PANFLDVGGGAT VT AF+LI+SD V AILVNIFGGIM+CDVIA+GI+ A K L + IP+VVRLQGT V+DAKALIA+SG++IL CDDL++AA+MVVKL++IV+LA +A ++V F+LPI
Sbjct: 51 RNLSLHEYMSMELLQEAGVSVPKGYVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERKYPRREYYFAITMERSFQGPVLIGSSHGGVNIEDVAAESPEAIIKEPIDIEEGIKKEQALQLAQKMGFPPNIVESAAENMVKLYSLFLKYDATMIEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEAFKLITSDKKVLAILVNIFGGIMRCDVIAQGIVMAVKDLEIKIPVVVRLQGTRVDDAKALIADSGLKILACDDLDEAARMVVKLSEIVTLAKQAHVDVKFQLPI 463 The following BLAST results are available for this feature:
BLAST of TCONS_00048921 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.