|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048900 ID=TCONS_00048900|Name=TCONS_00048900|organism=Clytia hemisphaerica|type=transcript|length=8868bp transcript from alignment at scaffold_148:91216..130284- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048900 ID=TCONS_00048900|Name=TCONS_00048900|organism=Clytia hemisphaerica|type=transcript|length=39069bp|location=Sequence derived from alignment at scaffold_148:91216..130284- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00048900 vs. Swiss-Prot (Human)
Match: MEGF8 (Multiple epidermal growth factor-like domains protein 8 OS=Homo sapiens GN=MEGF8 PE=1 SV=2) HSP 1 Score: 773.852 bits (1997), Expect = 0.000e+0 Identity = 620/2272 (27.29%), Postives = 948/2272 (41.73%), Query Frame = 2
Query: 1709 TLLITGGFDNIQTSSLFLAYKLPLSVVMVDSQTNTTLPLASHCKDYINKEHCLDDPNCQYCDGKSKCHASAYPPSG-----CSTSICSTQCSVFTTCEVC----------SSQGRCQWCPLDSQCYDSLKASTACKEP---AVHWWNNAVIGLIRHPVECAVKDTPPGLTEIKYSNPPNYLHPEAVRVKPEMTLE-NDEIQAKMLVRWKGKIHPFLEASFDA----QIELYLRYSSVNITMLVSKEERSTIMGELFQRIRFPDSIKDETLKGRPDFTAIFPVKDEQQGGRDVWYNFDVWLKKTEESNRKHLLFHAFWINAESSDYKLISFRHLEPLAGVDSCSQHRSCMGCLTDASCGWCVDQCV----------SRNACAPQFIQHRQEQCFLCQNYFTCNQCNQDQFCAWQKNECKMKHLVSESK---------ITQCHDGCTSFETLESCVEGEKTGCFWCSGRQKCLSFADYHPQNLFSDCYR---SITSTPRTVDCNALSDCASCIKEWRCGWCFNENNPLIGSCSRGDFTSPKSTCSNSSYTG------------WRYDRCPDVNECQLDMHTCKANSTCHNIDGSYDCPCXXXXXXXXKLACNKTCWPACGEHGTCD-LFNYQCVCDLGWKG-------------ANCSIDCGCNGHSTCLNR-TDLCDFCQDFTMGDSCQYCVNGSYGNATTSEGCQPCKCNGNGDVSRNLCDQKTGQCYCVNNTDGFYCEKCADGFVYDPK-----IEQCVLDCQRSNIHKMADQGVIVAHDSLLKHA----------CHWTITAQNLSHNEIIYNTQSSDHNILLHIT---KLKTSCFDSYLNIFDGVPPNPRTSSSIQNSPFKLLASLCGPDLDDKESYFRSQTGVLTIVYEGNIISSQRTHPLNHNDRGFQAIFQTLKCEDDCMAPFVCDVSNKCL------------CPTHLTGHHCQFKACPHDCNAATNQGICDQETKLCRCKFGFTGVDCANESLPFHLQLHNLASLQLPEHSP---FTMYGSSM-EYYNNKLYLFGNTGLSDSSGYFTV-FDLNSTSWSSIDSGID---AQPNNRIFHCSFIF---QDLMYIHGGVDKGGPSDDLWTFNFTSSTWKQVPLKKSFDLDVRLSGHTCT-KVELFVYLIGGYAPSDGLSEFVYYIDLASHRINVIKFNDLEPVGIYLHVAIYDKETDYIYLHGGVSFYDDEIKPSNQMYAFR---------------------------------PGNDP-TWNYIE---------------ALPDDTVPTL------VGHAAIKREEDIYVLSGYDDLLGFNKEVYVWKFHCNRWFKYENENVTDTFDGLASIFASVTLDNNNTFYVFTGYQPLSINGGELFSLLLPNKPCSLFDGLQTGCLKSFGCRWCPANQSCADQS--VPCENSTLSQQCNLNTMHSRGCDTFSTCSTCLSKYAQ---------NNDRCHWC-KCGKGAERVCLSNNQPCP----CALSQGLSANMSIVECHKGPCYTSTCMNC--HNQCFWGTHFQYITETDRRYDDKGNLPYNCFTKVLVDHVVSHPGYLKVKDQSEGQCPATCDTFKTCTACIASRGDLSGSTTCVWSEKLSQCMSTAILPLYCPIARCGSVSSTTCPVKGVCSRQQDCASCSQYTNCGWCSKGDQ-GYGTCMEGDFLEPFNEI-CGSGLSSNGRVVDSGNSANYTWAYMQCPLENECTNGHSNCTKSEVCRDLIEGYQCTCKVGYK--RVKGLCEPVCDPECENGECVTPNQCHCSFGWTGQQCNVSCMCNGHSNCLNETFPDVCLACQNDTQGAQCTRCKPLFVGSPRDGGSCQTCQHFCNGNSDICLYQTQQQ--EVERLGISNNRSALLEWITENVGDGPKFPSEAVCLMCGKLSSGETCDECVEGYY-KDKKSNVCVKCNCNGHGNVCN-KDGLDCQCLHNTRSNT------ACEVDCQNDQCSKCIEKDDYIGNPVSGNQCYKRINAK-------SSETVTLS-------GSNKLAFFAVAPSFTNVNIRINIDVLQGSLELFIADENQIFKLEMNGTQPRLTITRDTNRARRSMEASTNFLPS----------------------RSAFKDRITTFENF--ETDILWIYNIEKRVVIKIDHTQHNLRTKKFYFVLLPT------NKTGSDTTKFHVYFRQDLPRIDXXXXXXXXXXXXXXXXXXXXXXMKVRIDFIRNTQNQIQQLEMNAMQSRPLASYPLLFTKDDQKPHHA 7789
LL+ GG+ L +AYK+P V + +C Y + C DP C +C G + A PP G C + C + C+ C G WC + C + + E V WW A + + C + PGL + + PPN P+ V + T+ + + + ++G I+P L + ++ R +++ +++ + M E+ + + + K+ RP +FP+ GRD Y ++ + + H W ISF LEP S +GCL D CGWC+ + + C LC+ + C+ C QD FC W ++ + + +C C+ T E C+ + C WC C FA Y + C S+ S PR C+ C C++ CGWC NE+NP +G C +GDF+ P + S + G W Y RCPDV+EC+L + C +TC N SY+C C G+ GDG CN+TC CG HG C ++ CVCDLGW CS DCGC+ HS C R CD CQD+T G+ C+ C GS+GNAT S GC+PC+CNG+GD R CD +G C+C ++T+G +C+ C+ G+ DP+ +C +N+ +A V C W ++A E + L +T T C SY+ FDG P + + S L+A+ CG D+ ++ +G+L + +E N SS GF A + +C P C V +C+ CP G HC+ CP +CNA T G C+Q +C C GF G DCA + L L +L + G +M + + L++FG GL + ++ W+ + +G + P+ R FH + + MY+ GG+ GG + D W N T+ W+Q ++ +L ++GHT T + L + L+GGY+P +G ++ + LA+ + P G+Y H A+Y + TD +Y+ GG F+ + PS ++Y+ PG P +W + E ++ P L + HA+ + + VL G D F+ +V +++ +CN W + + A + Y+ G+ +++ G L +L LP PC L + C +S C WC DQ+ + C S C+ C TCS CL+++ + + RC WC C +GA C+ N C C ++Q C + C + C C +C W F+ ET R + + CF+ L++ VS + V+ CP C CT+C+ S+G G CVWS L QC+S + LPL C CG + C++ CA C + +CGWC+ G Q G G CMEG P + + CG +WA++ CP E+EC NGH +C +++ C D GY+C+CK GY + GLC PVC C NG CV P+ C C FG+ G+ C+ C CN HS C D CL C+N T+G+ C +C PLFVGS GG+C+ C FC GNS IC+ + + Q + E S + + W+TE + EAVC+ C S GE C+ C++GY+ D K C KC CNGH + CN +DG C C +NT + T + DC QC+KC ++ + G+P+ G QCY+ I+ + +S+T G + F V P FTNV+IR+ +DV G+++L+++ F + + T+ A + P R + + T+ + +L + + R+VI H H L++ +FY +LL GS ++ ++FRQD IDL +FF V LS ++ K + + + + EM M SRP A + F D P A
Sbjct: 525 VLLVAGGYSGRPRGDL-MAYKVPPFVFQAPAPDYHL----DYCSMYTDHSVCSRDPECSWCQGACQ----AAPPPGTPLGACPAASCLGLGRLLGDCQACLAFSSPTAPPRGPGTLGWCVHNESCLPRPEQARCRGEQISGTVGWWGPAPV-FVTSLEACVTQSFLPGLHLLTFQQPPNTSQPDKVSIVRSTTITLTPSAETDVSLVYRGFIYPMLPGGPGGPGAEDVAVWTRAQRLHVLARMARGPDTENMEEVGRWVAHQE--KETRRLQRPGSARLFPLP-----GRDHKYAVEIQGQLNGSAGPGHSELTLLWDRTGVPGGSEISFFFLEPYRSSSCTSYSSC-LGCLADQGCGWCLTSATCHLRQGGAHCGDDGAGGSLLVLVPTLCPLCEEHRDCHACTQDPFCEWHQSTSRKGDAACSRRGRGRGALKSPEECPPLCSQRLTCEDCLA-NSSQCAWCQSTHTCFLFAAYLARYPHGGCRGWDDSVHSEPRCRSCDGFLTCHECLQSHECGWCGNEDNPTLGRCLQGDFSGPLGGGNCSLWVGEGLGLPVALPARWAYARCPDVDECRLGLARCHPRATCLNTPLSYECHCQRGYQGDGISHCNRTCLEDCG-HGVCSGPPDFTCVCDLGWTSDLPPPTPAPGPPAPRCSRDCGCSFHSHCRKRGPGFCDECQDWTWGEHCERCRPGSFGNATGSRGCRPCQCNGHGDPRRGHCDNLSGLCFCQDHTEGAHCQLCSPGYYGDPRAGGSCFRECGGRALLTNVSSVALGSRRVGGLLPPGGGAARAGPGLSYCVWVVSA-----TEELQPCAPGTLCPPLTLTFSPDSSTPCTLSYVLAFDGFPRF--LDTGVVQSDRSLIAAFCG-QRRDRPLTVQALSGLLVLHWEANGSSSW----------GFNASVGSARCGSG--GPGSCPVPQECVPQDGAAGAGLCRCPQGWAGPHCRMALCPENCNAHTGAGTCNQSLGVCICAEGFGGPDCATKLDGGQLVWETLMDSRLSADTASRFLHRLGHTMVDGPDATLWMFGGLGLPQGLLGNLYRYSVSERRWTQMLAGAEDGGPGPSPRSFHAAAYVPAGRGAMYLLGGLTAGGVTRDFWVLNLTTLQWRQEKAPQTVELPA-VAGHTLTARRGLSLLLVGGYSPENGFNQQLLEYQLATGTWVSGAQSGTPPTGLYGHSAVYHEATDSLYVFGGFRFHVELAAPSPELYSLHCPDRTWSLLAPSQGAKRDRMRNVRGSSRGLGQVPGEQPGSWGFREVRKKMALWAALAGTGGFLEEISPHLKEPRPRLFHASALLGDTMVVLGGRSDPDEFSSDVLLYQVNCNAWLLPDLTRSASVGPPMEESVAHAVAAVGSRLYISGGFGGVAL--GRLLALTLPPDPCRLLSSPEA-CNQSGACTWCHGACLSGDQAHRLGCGGSP----CSPMPRSPEECRRLRTCSECLARHPRTLQPGDGEASTPRCKWCTNCPEGA---CIGRNGSCTSENDCRINQ--REVFWAGNCSEAACGAADCEQCTREGKCMWTRQFKRTGETRRILSVQPTYDWTCFSHSLLN--VSP---MPVESSPPLPCPTPCHLLPNCTSCLDSKGADGGWQHCVWSSSLQQCLSPSYLPLRCMAGGCGRLLRGPESCSLGCAQATQCALCLRRPHCGWCAWGGQDGGGRCMEGGLSGPRDGLTCGR--------------PGASWAFLSCPPEDECANGHHDCNETQNCHDQPHGYECSCKTGYTMDNMTGLCRPVCAQGCVNGSCVEPDHCRCHFGFVGRNCSTECRCNRHSECAGVGARDHCLLCRNHTKGSHCEQCLPLFVGSAVGGGTCRPCHAFCRGNSHICISRKELQMSKGEPKKYSLDPEEIENWVTEGPSE-----DEAVCVNCQNNSYGEKCESCLQGYFLLDGK---CTKCQCNGHADTCNEQDGTGCPCQNNTETGTCQGSSPSDRRDCYKYQCAKC--RESFHGSPLGGQQCYRLISVEQECCLDPTSQTNCFHEPKRRALGPGRTVLFGVQPKFTNVDIRLTLDVTFGAVDLYVSTSYDTFVVRVAPDTGVHTVHIQPPPAPPPPPPPADGGPRGAGDPGGAGASSGPGAPAEPRVREVWPRGLITYVTVTEPSAVLVVRGVRDRLVITYPHEHHALKSSRFYLLLLGVGDPSGPGANGSADSQGLLFFRQDQAHIDLFVFFSVFFSCFFLFLSLCVLLWKAKQALDQRQEQRRHLQEMTKMASRPFAKVTVCFPPDPTAPASA 2714 HSP 2 Score: 217.624 bits (553), Expect = 0.000e+0 Identity = 152/520 (29.23%), Postives = 239/520 (45.96%), Query Frame = 3
Query: 171 CLQNRKIFTEKTGIVTDGYDRYQNDLSCEWLIEGGPPE-VVTIHFTSFYTECTYDYIHIHDGNSSQSPLLATISGSQTDITLSSTQNQVYILLSTDGNTAYDGFNLTYFIHKCPMNCSNNVTHTFGTCQSDGKCQCTGSAFGDHCQFQMCPNVCFQGSGNGICNMTEKKCSCNDEFYGDSCVIDKKPNTNPNRWYQISEYS-SLQKRAGHVSEYISSVDRLFLFGGLSAGSVLDDLPYFDFKLNKWDTVDSHGQQPAGVSLCASAKYKDGFLLFGGELSNKSLSNELWFFN-VTSLLWNLVSKDSSIPGH----AGHALVYWNE-FVYVIGGRVDDASNDTFSTNIHRFDMYKKQ---WTTKKPSFGKSSDMRLFGHTAQFYPGTNIIVIHGGYHPSSQWKISKMTNKFFLYDIVNNIWDTLP---TIGDPFVATAFHKSVIAGNYFITYGGF-------SSCGELNGLRFFNLDCNQWTKPEALLPNGGSISNVFHKRAIYSHSMTMKDHHTLLITGGF 1667
C R++ E G VTDG Y + +CEWLIE P+ + + F TECTYDY+ ++DG+S + PLLA++SGS + ++ ++ + L +D N GFN ++ CP C ++ G CQ G C C G C Q C C +G C C C F G +C + N W+ +S + R G ++S L +FGG + L DL ++F N W++ D PA + + +L GGEL++ SL+N++W F+ + W L++ +S AGHA ++ ++YV GGR +D FS+ + RF + W P+ G+ GH+ F+ + +++HGG+ PS+ + S N L+ + ++W TL + P AFH + + GNY + YGG C E +G+ F++L C+QW L P G YSH + LL+ GG+
Sbjct: 30 CKGQRQVLREAPGFVTDGAGNYSVNGNCEWLIEAPSPQHRILLDFLFLDTECTYDYLFVYDGDSPRGPLLASLSGSTRPPPIEASSGKMLLHLFSDANYNLLGFNASFRFSLCPGGCQSH-----GQCQPPGVCACEPGWGGPDCGLQECSAYC---GSHGTCASPLGPCRCEPGFLGRACDLHLWENQGAGWWHNVSARDPAFSARIGAAGAFLSPPGLLAVFGGQDLNNALGDLVLYNFSANTWESWDL-SPAPAARHSHVAVAWAGSLVLMGGELADGSLTNDVWAFSPLGRGHWELLAPPASSSSGPPGLAGHAAALVDDVWLYVSGGR---TPHDLFSSGLFRFRLDSTSGGYWEQVIPAGGRPPAAT--GHSMVFHAPSRALLVHGGHRPSTA-RFSVRVNSTELFHVDRHVWTTLKGRDGLQGP-RERAFHTASVLGNYMVVYGGNVHTHYQEEKCYE-DGIFFYHLGCHQWVSGAELAPPGTPEGRAAPPSGRYSHVAAVLGGSVLLVAGGY 532 The following BLAST results are available for this feature:
BLAST of TCONS_00048900 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2024, MARIMBA.