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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048889 ID=TCONS_00048889|Name=TCONS_00048889|organism=Clytia hemisphaerica|type=transcript|length=3836bp
AAGAAATCCCGTTACAAAAGTCATCTACAGATATGATTGAAGATCACTTA
ACAAAAAAACACAGACGTGTAAACACGACAGGAACAGGGTAACACTAAAA
CCCTTTCTTAAAAAACAGAGTCAATCTGTTCTTAAGCACTTTAattcaaa
catttcaaaataaagaagaagaaaaggaaccGATTTCAGGCAGCGAGGGC
AAAGCATCGTGGTGTTATTCAGAGGGTGTGTTCAACTTGACAGCAATCGa
aatattacaattttaccGTGTGGGGAATTTGTAATAGTAACAGTTCAAAA
TTCAAATGTATAAAAATTGAGTGCAACATCTTTAATCAGAAAGCTTGGAA
TATAGTGCAGCAAGCACAAATAACTGATAAATTTTGACGAATCAAGAAGT
GCAGTAGCATCGACAAAAATAATGGCTTTTATGAAACCAGACGAATTCAG
CGCATTTCCACTTCCATACTTACCTAGAGGAGGAGCATTCCCATCACCAA
CTGCTCCACTACCAAGTATGAATACTTTCTCCAACAAACGAAGACATTCA
GAAAACACAACATACGAAGCAACTTTACCATTACCACCATTGAAAGTTCC
AAAACTCATCTCTTCAACTAGCAGTCTTCCACCACCACCTCCCCTGGTCA
CACCAGGTCGAGGTCACTCTTGCACATCTGATGATTGCAAATACTGCTCA
GGATTGACTAATCTGGATATTGCAGCTTTTTACTGGTCCATGATTGCTAT
GAGAGGATACTCCAAAGCGAAAGCATCCAGTTCATACGAAACGCCTTACT
CACCAAACCTTCCATCTCCAGTCTGCAAGTCTTCAACATTCGATCTTGCA
TACAAACCACCAAGTCCTTCAGGTAGTTTGTCAAGCATGGATTCAGAACC
TCTTTCACCATCAAGCAGTACTACAAGCGAATCATCAACTAGCTCCACTA
AAGATTTGGGAATTAAATACCAATGTCAAGTCTGTCATAAATCTTATTCA
CACCCTCGACTTTTAAATCGTCACCTTCAATCACACACACCCTACAAAAA
ACACCACTGCCCTCGCTGCCGCAAAGGATTTAATGATGCTTTTGATCTGA
AAAGACACATTCGAACACACACTGGAATCAAACCATTTCAATGTCGAATG
TGTGAAAAATCATTCACTCAGagATGTTCATTGGAAGCTCACATGACAAG
AGTACACAATGTTGTCCACAAGTTCGCTTTCCGTGAACGCCGACCCAAGC
TGTTTGTTTGTGAAGATTGTGGTGTCACCTTCCCTGATAACAACAAGttt
cgtcaacatgaaaaagaaagcaCATGTAGACCAAACAAATCAAACTAAGA
GTTTAGTATAACAGTTTTAGACAGTAAGATTGTTCGTTTTATGTTTGTAA
TGTCCCTATTTCTCCTGCTCTCATTTTATTTGTTTCAGATTCTCAATGTT
GAGAAAGAGAGGAGAAACGTGTTGTCCCTGTATataaattttattctaaa
tacTTCAACTTATATTATAACGTATATATTACGAAAATGTGGAACAAGAA
AAGGGTTGGCGGCTGATTATCACTAATGACTTATATTAAGTCGTAAAATA
GCCAGCCAACTAATTTGCCCTTTTGGGCAAACAATATTATTTTATAGGAA
AGTCTTATTGTAAACAGTTCACTAACTTCTTGCTACCGTTACAAAACTGT
TCTANAAAATAATGGCTTTTATGAAACCAGACGAATTCAGCGCATTTCCA
CTTCCATACTTACCTAGAGGAGGAGCATTCCCATCACCAACTGCTCCACT
ACCAAGTATGAATACTTTCTCCAACAAACGAAGACATTCAGAAAACACAA
CATACGAAGCAACTTTACCATTACCACCATTGAAAGTTCCAAAACTCATC
TCTTCAACTAGCAGTCTTCCACCACCACCTCCCCTGGTCACACCAGGTCG
AGGTCACTCTTGCACATCTGATGATTGCAAATACTGCTCAGGATTGACTA
ATCTGGATATTGCAGCTTTTTACTGGTCCATGATTGCTATGAGAGGATAC
TCCAAAGCGAAAGCATCCAGTTCATACGAAACGCCTTACTCACCAAACCT
TCCATCTCCAGTCTGCAAGTCTTCAACATTCGATCTTGCATACAAACCAC
CAAGTCCTTCAGGTAGTTTGTCAAGCATGGATTCAGAACCTCTTTCACCA
TCAAGCAGTACTACAAGCGAATCATCAACTAGCTCCACTAAAGATTTGGG
AATTAAATACCAATGTCAAGTCTGTCATAAATCTTATTCACACCCTCGAC
TTTTAAATCGTCACCTTCAATCACACACACCCTACAAAAAACACCACTGC
CCTCGCTGCCGCAAAGGATTTAATGATGCTTTTGATCTGAAAAGACACAT
TCGAACACACACTGGAATCAAACCATTTCAATGTCGAATGTGTGAAAAAT
CATTCACCCAGagATGTTCATTGGAAGCTCACATGACAAGAGTACACAAT
GTTGTCCACAAGTTCGCTTTCCGTGAACGCCGACCCAAGCTGTTTGTTTG
TGAAGATTGTGGTGTCACCTTCCCTGATAACAACAAGtttcgtcaacatg
aaaaagaaagcaCATGCAGACCAAACAAATCAAACTAAGAGTTTAGTATA
ACAGTTTTAGACAGtaagattgtttgttttatgtttGTAATGTCCCTATT
TCTCCTGCTCTCATTTTATTTGTTTCAGATTCTCAATGTTGAGAAAGAGA
GGAGAAACGTGTTGTCCCTGTATataaattttattctaaatacTTCAACT
TATATTATAACGTATATATTACGAAAATGTGGAACAAGAAAAGGGTTGGC
GGCTGATTATCACTAATGACTTATATTAAGTCGTAAAATAGCCAGCCAAC
TAATTTGCCCTTTTGGGCAAACAATATTATTTTATAGGAAAGTCTTATTG
TAAACAGTTCACTAACTTTTTGCTACCGTTACAAAACTGTTCTAGTTCTA
TTTCAAACTCAAGAAATCAACGTATACAGCAACAGTTGTAACGCTAGCAA
AAAGTTAAGTTATCGTATAAtcatttgttttcaattttatcgTATTGATT
GTAAGAGCGTGAGAGTTTAATGCGAGTGAGTGTTTAAAAGAGAGAAAGTG
TGAGTTCGTGGACTTTAGTCAGTGAGTGTGAATTTATATTAAGTAAGTTA
GAGCGATCTTGAGAGGTACGTTTAACAATAAGAGAAAGGGATGAGAGGTG
ATAAAAAAGTTGACTTACTGAGGCAAGGTCAAAAATTATGACAGATTCTT
TCCTGCGGTTTCTTTATCCAAAAGCTTCTTTTGTTTGTCAAGTCGTCAAC
GACACTCCTTCCctgttcaaaaaaaattaaaacaataagAAAAGACATGA
CTGAGAGAGGGAGAGTGAGTGAGTCATCATTAAAAAGCTATAACGATATC
ATATTAATCTCTATTGACAAAGTATATTAAGTTTAAGGACGTCCATCTAT
CGTTCATgagagtttttcaataaaaccacATCTACTCTATCATCTTTTGT
TCAAAATAGGTGGAGCATGAGAAAGTAGAAAGGAATTTCTTTTCTATTCA
CCCAATGCCGTTAGATGGCTCCGAAATGTTATTAAACTTAATACCATCCT
ATTAAACATCTAAAAACTAACCATCAGATTACAACTCTTACGATGGTTCT
TTGCGTCGAATATGAATATCATGTAACAAAATCAACCGAgagaaagtttc
ttatctttgATAAAGCCGATAACGGTTTCGCCTATTTCTTTTCAGAAGTC
TTTTGGGCCAAGTAATCATATCACCTCAGGTTGGGN Run BLAST on NCBI transcript from alignment at scaffold_148:27804..32278- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048889 ID=TCONS_00048889|Name=TCONS_00048889|organism=Clytia hemisphaerica|type=transcript|length=4475bp|location=Sequence derived from alignment at scaffold_148:27804..32278- (Clytia hemisphaerica)
AAGAAATCCCGTTACAAAAGTCATCTACAGATATGATTGAAGATCACTTA
ACAAAAAAACACAGACGTGTAAACACGACAGGAACAGGGTAACACTAAAA
CCCTTTCTTAAAAAACAGAGTCAATCTGTTCTTAAGCACTTTAATTCAAA
CATTTCAAAATAAAGAAGAAGAAAAGGAACCGATTTCAGGCAGCGAGGGC
AAAGCATCGTGGTGTTATTCAGAGGGTGTGTTCAACTTGACAGCAATCGA
AATATTACAATTTTACCGTGTGGGGAATTTGTAATAGTAACAGTTCAAAA
TTCAAATGTATAAAAATTGAGTGCAACATCTTTAATCAGAAAGCTTGGAA
TATAGTGCAGCAAGCACAAATAACTGGTAAGTAGTACAACATTTTGCATT
ATTGATTCTACGTTTATTGATGTGGGAAAAGTATTAGACAGATAAACATA
TCAATAATCAAATTTTTAAGGAATATCTACTCGTAAAATAATCATGAAAA
TCTTTTCAACATTCATAAAACATTTTTTTCATGATACCCTGACGTCAAGT
GTTTCACTTTTTAAATTATAGAAAGCTTCATTGTTTAGGTTTTTCACGAA
ACTGATTTTCGAAAAGAAGCAGCAGCATCTTTTGATAAATAAGTAAAATA
TGAAGCTATTCATCTTGGAGTATGATTGAATTATTCAAACTGCATCAACT
TAGTATATGAACAGCCTCTTGTGATTAATCAGTTTTTAAATGAATTATCC
TGTTCTTTTTTCAACAGATAAATTTTGACGAATCAAGAAGTGCAGTAGCA
TCGACAAAAATAATGGCTTTTATGAAACCAGACGAATTCAGCGCATTTCC
ACTTCCATACTTACCTAGAGGAGGAGCATTCCCATCACCAACTGCTCCAC
TACCAAGTATGAATACTTTCTCCAACAAACGAAGACATTCAGAAAACACA
ACATACGAAGCAACTTTACCATTACCACCATTGAAAGTTCCAAAACTCAT
CTCTTCAACTAGCAGTCTTCCACCACCACCTCCCCTGGTCACACCAGGTC
GAGGTCACTCTTGCACATCTGATGATTGCAAATACTGCTCAGGATTGACT
AATCTGGATATTGCAGCTTTTTACTGGTCCATGATTGCTATGAGAGGATA
CTCCAAAGCGAAAGCATCCAGTTCATACGAAACGCCTTACTCACCAAACC
TTCCATCTCCAGTCTGCAAGTCTTCAACATTCGATCTTGCATACAAACCA
CCAAGTCCTTCAGGTAGTTTGTCAAGCATGGATTCAGAACCTCTTTCACC
ATCAAGCAGTACTACAAGCGAATCATCAACTAGCTCCACTAAAGATTTGG
GAATTAAATACCAATGTCAAGTCTGTCATAAATCTTATTCACACCCTCGA
CTTTTAAATCGTCACCTTCAATCACACACACCCTACAAAAAACACCACTG
CCCTCGCTGCCGCAAAGGATTTAATGATGCTTTTGATCTGAAAAGACACA
TTCGAACACACACTGGAATCAAACCATTTCAATGTCGAATGTGTGAAAAA
TCATTCACTCAGGTAAGATACTTTGAGTTTCTTATTTAGAAAGTCCATAG
TTAGTAGACAAAGTGCCAACAGAGCATAAATACAACATTTTAAGATTAAC
AACTACACAACAGCATCTTTTTTTTTGTTTTTTCAGAGATGTTCATTGGA
AGCTCACATGACAAGAGTACACAATGTTGTCCACAAGTTCGCTTTCCGTG
AACGCCGACCCAAGCTGTTTGTTTGTGAAGATTGTGGTGTCACCTTCCCT
GATAACAACAAGTTTCGTCAACATGAAAAAGAAAGCACATGTAGACCAAA
CAAATCAAACTAAGAGTTTAGTATAACAGTTTTAGACAGTAAGATTGTTC
GTTTTATGTTTGTAATGTCCCTATTTCTCCTGCTCTCATTTTATTTGTTT
CAGATTCTCAATGTTGAGAAAGAGAGGAGAAACGTGTTGTCCCTGTATAT
AAATTTTATTCTAAATACTTCAACTTATATTATAACGTATATATTACGAA
AATGTGGAACAAGAAAAGGGTTGGCGGCTGATTATCACTAATGACTTATA
TTAAGTCGTAAAATAGCCAGCCAACTAATTTGCCCTTTTGGGCAAACAAT
ATTATTTTATAGGAAAGTCTTATTGTAAACAGTTCACTAACTTCTTGCTA
CCGTTACAAAACTGTTCTANAAAATAATGGCTTTTATGAAACCAGACGAA
TTCAGCGCATTTCCACTTCCATACTTACCTAGAGGAGGAGCATTCCCATC
ACCAACTGCTCCACTACCAAGTATGAATACTTTCTCCAACAAACGAAGAC
ATTCAGAAAACACAACATACGAAGCAACTTTACCATTACCACCATTGAAA
GTTCCAAAACTCATCTCTTCAACTAGCAGTCTTCCACCACCACCTCCCCT
GGTCACACCAGGTCGAGGTCACTCTTGCACATCTGATGATTGCAAATACT
GCTCAGGATTGACTAATCTGGATATTGCAGCTTTTTACTGGTCCATGATT
GCTATGAGAGGATACTCCAAAGCGAAAGCATCCAGTTCATACGAAACGCC
TTACTCACCAAACCTTCCATCTCCAGTCTGCAAGTCTTCAACATTCGATC
TTGCATACAAACCACCAAGTCCTTCAGGTAGTTTGTCAAGCATGGATTCA
GAACCTCTTTCACCATCAAGCAGTACTACAAGCGAATCATCAACTAGCTC
CACTAAAGATTTGGGAATTAAATACCAATGTCAAGTCTGTCATAAATCTT
ATTCACACCCTCGACTTTTAAATCGTCACCTTCAATCACACACACCCTAC
AAAAAACACCACTGCCCTCGCTGCCGCAAAGGATTTAATGATGCTTTTGA
TCTGAAAAGACACATTCGAACACACACTGGAATCAAACCATTTCAATGTC
GAATGTGTGAAAAATCATTCACCCAGGTAAGATACTTTGAGTTTCTTATT
TAGAAAGCCCATAGTTAGTAGACAAAGTGCCAACAGAGCATAAATACAAC
ATTTTAAGATTAACAACTACACAACAGCATCTTCTTTTTGTTTTTTTCAG
AGATGTTCATTGGAAGCTCACATGACAAGAGTACACAATGTTGTCCACAA
GTTCGCTTTCCGTGAACGCCGACCCAAGCTGTTTGTTTGTGAAGATTGTG
GTGTCACCTTCCCTGATAACAACAAGTTTCGTCAACATGAAAAAGAAAGC
ACATGCAGACCAAACAAATCAAACTAAGAGTTTAGTATAACAGTTTTAGA
CAGTAAGATTGTTTGTTTTATGTTTGTAATGTCCCTATTTCTCCTGCTCT
CATTTTATTTGTTTCAGATTCTCAATGTTGAGAAAGAGAGGAGAAACGTG
TTGTCCCTGTATATAAATTTTATTCTAAATACTTCAACTTATATTATAAC
GTATATATTACGAAAATGTGGAACAAGAAAAGGGTTGGCGGCTGATTATC
ACTAATGACTTATATTAAGTCGTAAAATAGCCAGCCAACTAATTTGCCCT
TTTGGGCAAACAATATTATTTTATAGGAAAGTCTTATTGTAAACAGTTCA
CTAACTTTTTGCTACCGTTACAAAACTGTTCTAGTTCTATTTCAAACTCA
AGAAATCAACGTATACAGCAACAGTTGTAACGCTAGCAAAAAGTTAAGTT
ATCGTATAATCATTTGTTTTCAATTTTATCGTATTGATTGTAAGAGCGTG
AGAGTTTAATGCGAGTGAGTGTTTAAAAGAGAGAAAGTGTGAGTTCGTGG
ACTTTAGTCAGTGAGTGTGAATTTATATTAAGTAAGTTAGAGCGATCTTG
AGAGGTACGTTTAACAATAAGAGAAAGGGATGAGAGGTGATAAAAAAGTT
GACTTACTGAGGCAAGGTCAAAAATTATGACAGATTCTTTCCTGCGGTTT
CTTTATCCAAAAGCTTCTTTTGTTTGTCAAGTCGTCAACGACACTCCTTC
CCTGTTCAAAAAAAATTAAAACAATAAGAAAAGACATGACTGAGAGAGGG
AGAGTGAGTGAGTCATCATTAAAAAGCTATAACGATATCATATTAATCTC
TATTGACAAAGTATATTAAGTTTAAGGACGTCCATCTATCGTTCATGAGA
GTTTTTCAATAAAACCACATCTACTCTATCATCTTTTGTTCAAAATAGGT
GGAGCATGAGAAAGTAGAAAGGAATTTCTTTTCTATTCACCCAATGCCGT
TAGATGGCTCCGAAATGTTATTAAACTTAATACCATCCTATTAAACATCT
AAAAACTAACCATCAGATTACAACTCTTACGATGGTTCTTTGCGTCGAAT
ATGAATATCATGTAACAAAATCAACCGAGAGAAAGTTTCTTATCTTTGAT
AAAGCCGATAACGGTTTCGCCTATTTCTTTTCAGAAGTCTTTTGGGCCAA
GTAATCATATCACCTCAGGTTGGGN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00048889-exon-scaffold_148-1575043694:31903..32278 | TCONS_00048889-exon-scaffold_148-1575043694:31903..32278 | Clytia hemisphaerica | exon |
| TCONS_00048889-exon-scaffold_148-1575043694:30717..31511 | TCONS_00048889-exon-scaffold_148-1575043694:30717..31511 | Clytia hemisphaerica | exon |
| TCONS_00048889-exon-scaffold_148-1575043694:29303..30592 | TCONS_00048889-exon-scaffold_148-1575043694:29303..30592 | Clytia hemisphaerica | exon |
| TCONS_00048889-exon-scaffold_148-1575043694:27804..29178 | TCONS_00048889-exon-scaffold_148-1575043694:27804..29178 | Clytia hemisphaerica | exon |
| TCONS_00048889-exon-scaffold_148-1510915933:31903..32278 | TCONS_00048889-exon-scaffold_148-1510915933:31903..32278 | Clytia hemisphaerica | exon |
| TCONS_00048889-exon-scaffold_148-1510915933:30717..31511 | TCONS_00048889-exon-scaffold_148-1510915933:30717..31511 | Clytia hemisphaerica | exon |
| TCONS_00048889-exon-scaffold_148-1510915933:29303..30592 | TCONS_00048889-exon-scaffold_148-1510915933:29303..30592 | Clytia hemisphaerica | exon |
| TCONS_00048889-exon-scaffold_148-1510915933:27804..29178 | TCONS_00048889-exon-scaffold_148-1510915933:27804..29178 | Clytia hemisphaerica | exon |
| TCONS_00048889-exon-scaffold_148-1491911889:31903..32278 | TCONS_00048889-exon-scaffold_148-1491911889:31903..32278 | Clytia hemisphaerica | exon |
| TCONS_00048889-exon-scaffold_148-1491911889:30717..31511 | TCONS_00048889-exon-scaffold_148-1491911889:30717..31511 | Clytia hemisphaerica | exon |
| TCONS_00048889-exon-scaffold_148-1491911889:29303..30592 | TCONS_00048889-exon-scaffold_148-1491911889:29303..30592 | Clytia hemisphaerica | exon |
| TCONS_00048889-exon-scaffold_148-1491911889:27804..29178 | TCONS_00048889-exon-scaffold_148-1491911889:27804..29178 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_148 | supercontig | scaffold_148:27804..32278 - |
Blast
BLAST of TCONS_00048889 vs. Swiss-Prot (Human)
Match: OVOL1 (Putative transcription factor Ovo-like 1 OS=Homo sapiens GN=OVOL1 PE=2 SV=3) HSP 1 Score: 147.132 bits (370), Expect = 2.342e-38 Identity = 62/120 (51.67%), Postives = 89/120 (74.17%), Query Frame = 2
Query: 959 GIKYQCQVCHKSYSHPRLLNRHLQSHTPYKKHHCPRCRKGFNDAFDLKRHIRTHTGIKPFQCRMCEKSFTQRCSLEAHMTRVHNVVHKFAFRERRPKLFVCEDCGVTFPDNNKFRQHEKE 1318
G + C+VC K++++ R+LNRH++ H K+H C C KGFND FDLKRH+RTHTG++P++C +C+K+FTQRCSLE+H+ ++H V K+A++ERR KL+VCE+CG T H KE
Sbjct: 115 GDLFTCRVCQKAFTYQRMLNRHMKCHNDVKRHLCTYCGKGFNDTFDLKRHVRTHTGVRPYKCSLCDKAFTQRCSLESHLKKIHGVQQKYAYKERRAKLYVCEECGCTSESQEGHVLHLKE 234 HSP 2 Score: 147.132 bits (370), Expect = 2.342e-38 Identity = 62/120 (51.67%), Postives = 89/120 (74.17%), Query Frame = 2
Query: 2249 GIKYQCQVCHKSYSHPRLLNRHLQSHTPYKKHHCPRCRKGFNDAFDLKRHIRTHTGIKPFQCRMCEKSFTQRCSLEAHMTRVHNVVHKFAFRERRPKLFVCEDCGVTFPDNNKFRQHEKE 2608
G + C+VC K++++ R+LNRH++ H K+H C C KGFND FDLKRH+RTHTG++P++C +C+K+FTQRCSLE+H+ ++H V K+A++ERR KL+VCE+CG T H KE
Sbjct: 115 GDLFTCRVCQKAFTYQRMLNRHMKCHNDVKRHLCTYCGKGFNDTFDLKRHVRTHTGVRPYKCSLCDKAFTQRCSLESHLKKIHGVQQKYAYKERRAKLYVCEECGCTSESQEGHVLHLKE 234
The following BLAST results are available for this feature:
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