TCONS_00048886 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048886
Unique NameTCONS_00048886
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length359

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048886 ID=TCONS_00048886|Name=TCONS_00048886|organism=Clytia hemisphaerica|type=transcript|length=359bp
GGTGTCTATTGAAACTATCGAGAGCGGTGCAACAAGGACAAGGACACTCA
GTGGAACAGAAGCAATCATTGTTAAATCGATCTCTAATGGGATGCATAGA
GaagCAATGATGATGCTTATCAAACTTCCAGAGTACAAAGATTATCTAAT
TCAATGTTTTATCAAAGATTGCAAAGATGAGCTAGCAAATCTTTCATCAC
TTCCAACGAGTTCAATCCTAAGGAAAACGGATTCTGAATCAATCAAAAAT
TTGGGAACAAATGCTGTATTGGAAGAGTTTTTAAGGATAATTCCCACCCT
AactaaaacgattaaaaagatCACAAAGGACGATGATTACATTACAACCC
AAATTTGTA
Run BLAST on NCBI

protein sequence of TCONS_00048886-protein

>TCONS_00048886-protein ID=TCONS_00048886-protein|Name=TCONS_00048886-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
VSIETIESGATRTRTLSGTEAIIVKSISNGMHREAMMMLIKLPEYKDYLI
QCFIKDCKDELANLSSLPTSSILRKTDSESIKNLGTNAVLEEFLRIIPTL
TKTIKKITKDDDYITTQIC
Run BLAST on NCBI

transcript from alignment at scaffold_148:346799..347455+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048886 ID=TCONS_00048886|Name=TCONS_00048886|organism=Clytia hemisphaerica|type=transcript|length=657bp|location=Sequence derived from alignment at scaffold_148:346799..347455+ (Clytia hemisphaerica)
GGTGTCTATTGAAACTATCGAGAGCGGTGCAACAAGGACAAGGACACTCA
GTGGAACAGAAGCAATCATTGTTAAATCGATCTCTAATGGGATGCATAGA
GGTATTTAATGTACATTTccaaacatttattttttatggcACAAAACGAC
CCAGATTTATATACTTCCATGGCTATGAACAATAAATAACTTCAACTaca
aaaagttattcaaaaataagTATGGAACCCGATACCAACTTTAAATATCC
TAATTTTAAGCAGGAACTCATAAACTAATTCACAAAAATATTTGCCCCAA
CCAGGAATCGAACCTGGGTCAATCATAAACGAGTATGAttatcataccac
tagaccattgggGCATGAGTAGTATGGTAACAggtcttttttattttaga
agCAATGATGATGCTTATCAAACTTCCAGAGTACAAAGATTATCTAATTC
AATGTTTTATCAAAGATTGCAAAGATGAGCTAGCAAATCTTTCATCACTT
CCAACGAGTTCAATCCTAAGGAAAACGGATTCTGAATCAATCAAAAATTT
GGGAACAAATGCTGTATTGGAAGAGTTTTTAAGGATAATTCCCACCCTAa
ctaaaacgattaaaaagatCACAAAGGACGATGATTACATTACAACCCAA
ATTTGTA

Coding sequence (CDS) from alignment at scaffold_148:346799..347455+

>TCONS_00048886 ID=TCONS_00048886|Name=TCONS_00048886|organism=Clytia hemisphaerica|type=CDS|length=714bp|location=Sequence derived from alignment at scaffold_148:346799..347455+ (Clytia hemisphaerica)
GTGTCTATTGAAACTATCGAGAGCGGTGCAACAAGGACAAGGACACTCAG
TGGAACAGAAGCAATCATTGTTAAATCGATCTCTAATGGGATGCATAGAG
aagCAATGATGATGCTTATCAAACTTCCAGAGTACAAAGATTATCTAATT
CAATGTTTTATCAAAGATTGCAAAGATGAGCTAGCAAATCTTTCATCACT
TCCAACGAGTTCAATCCTAAGGAAAACGGATTCTGAATCAATCAAAAATT
TGGGAACAAATGCTGTATTGGAAGAGTTTTTAAGGATAATTCCCACCCTA
actaaaacgattaaaaagatCACAAAGGACGATGATTACATTACAACCCA
AATTTGTGTGTCTATTGAAACTATCGAGAGCGGTGCAACAAGGACAAGGA
CACTCAGTGGAACAGAAGCAATCATTGTTAAATCGATCTCTAATGGGATG
CATAGAGaagCAATGATGATGCTTATCAAACTTCCAGAGTACAAAGATTA
TCTAATTCAATGTTTTATCAAAGATTGCAAAGATGAGCTAGCAAATCTTT
CATCACTTCCAACGAGTTCAATCCTAAGGAAAACGGATTCTGAATCAATC
AAAAATTTGGGAACAAATGCTGTATTGGAAGAGTTTTTAAGGATAATTCC
CACCCTAactaaaacgattaaaaagatCACAAAGGACGATGATTACATTA
CAACCCAAATTTGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031069XLOC_031069Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048886-proteinTCONS_00048886-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048886-exon-scaffold_148-1491911889:346799..346899TCONS_00048886-exon-scaffold_148-1491911889:346799..346899Clytia hemisphaericaexon
TCONS_00048886-exon-scaffold_148-1510915933:346799..346899TCONS_00048886-exon-scaffold_148-1510915933:346799..346899Clytia hemisphaericaexon
TCONS_00048886-exon-scaffold_148-1575043694:346799..346899TCONS_00048886-exon-scaffold_148-1575043694:346799..346899Clytia hemisphaericaexon
TCONS_00048886-exon-scaffold_148-1491911889:347198..347455TCONS_00048886-exon-scaffold_148-1491911889:347198..347455Clytia hemisphaericaexon
TCONS_00048886-exon-scaffold_148-1510915933:347198..347455TCONS_00048886-exon-scaffold_148-1510915933:347198..347455Clytia hemisphaericaexon
TCONS_00048886-exon-scaffold_148-1575043694:347198..347455TCONS_00048886-exon-scaffold_148-1575043694:347198..347455Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_148supercontigscaffold_148:346799..347455 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.236518	0.461285	0.267798	0.261999	0.956874	0.756135	0.912244	0.854032	0.797237	0.987507	0.958499	0.15752	1.88761	1.14351	1.47733	0.57651	0.710213	0.727946	0.754272	1.57858	0.686038	1.00388	0	1.47929	0.761817	2.94625	2.91882	1.03835	0.262517	0.534926
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048886 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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