TCONS_00048879 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048879
Unique NameTCONS_00048879
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1094

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048879 ID=TCONS_00048879|Name=TCONS_00048879|organism=Clytia hemisphaerica|type=transcript|length=1094bp
ACATCACTAGTATTGTGTAAGCGAAATGAGCAAAATACCCAGATTCCAAG
CAGAAGGTACCATAGCAAGCACAGCATCTCCTTCTTCCCGGAAATTACAA
ATCAGTCAACAAAAGCAGTTCAAAAAAATGGACTCTATTGACGTgtactt
aaaaaagaaaaaaaatcgtatGAAATATCAAATGAATTATCATACAAAAC
TCAAGAAACAAGCTGAAGATAATCTGAAGCGAATGAAGTTGTCACACAAC
ACACCAAAGGCGGATACAGCTAATATTACTGCACGGaaatcaaaaggCAG
CACACCAGTGGCAACCAAAACTACCAAACGTGCATCGACAGCTTCTTTCA
AAGTAGACAAAGAAGTGACCTTCAATTTCACATCAAAGCTGAAATCACCC
AAACCTGTACTTAAAGAGTCTAATCTTAACAAGAGTGCAATCTCCTCCTC
CTACATCAAACCCACAAGAAAATCCTTCAAAAATGTCTCCATTCTCGACA
CCAAATCACCTAATGTAAAAACAACTTGCTCGTCGTCTGCAACGAAGAAA
ACACCTGCGAAGTTTGATCTTCAAGCTTCTTTGAAGAAGAGGCTGTCTTA
CAAGCCGCACTCTGGAAAACTGAAGGGTTCTTACTTTGCTGATAAGTCGT
CAGCAGGAGCTAACACCACTTTCAACGCCAATTCTACTTTTACGCTTTCC
CCAAGGAAAGATGTCAAGCAATTGAGTAAACCAAAAGCCAAAGCCAAGag
GGAGAATCGACGTAACGAAGCTACTAAACGACGTGACAACAAGAGAGCAG
ATGCACTTTCAAAACGTCGTGGAATTCAAACttaagaaaatcattttatC
CGTTTTTGACCCAGTGTACATACACCCATATGTTTTAAGTAGTAGCATGT
TTTATCATTTAACTGTATATAGTATCTTTATCTAACAACACTACCTCTTT
GGAAAATGGGTATTACTGCAAAttcttttgtaaattatttagTCACCATT
ATTTTTGACCAAAGAAATAATCAATATAGACTTTATACGTTTCAATGAAT
CTATCGAGTCCTGCTTTCTTTTATAAACGTTTCTTTCAAGCGTA
Run BLAST on NCBI

transcript from alignment at scaffold_148:20089..24463+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048879 ID=TCONS_00048879|Name=TCONS_00048879|organism=Clytia hemisphaerica|type=transcript|length=4375bp|location=Sequence derived from alignment at scaffold_148:20089..24463+ (Clytia hemisphaerica)
ACATCACTAGTATTGTGTAAGCGAAAGTAAGCGCTCTCGATTCAgttacc
actttcaaaaaaactcagatcaaaatattttgcttggctgggatcgAGCT
GTCTTAAGGGTCTATATATATATAAAGCTCAGCGAATACAGACCATAAAT
TTATAACGCTTTGGCGTTGAAAGTCTTGAAGGAAAATTAAAGCGAATAGT
TACCATTTTTGATGGTCCAATCAAATTATTTGAGTTGTTTCTGCAAGATC
AACAAGCAGCCTCATATATGTATATAGATTAGCCTTTAGAAAAGCGAGAC
ATTTGGCGTTGCGGTGCTCCTATTCTAGGTCAGGACCTACCGGTACAGGA
CCGAAAAATATCGAGCTACCTCGTATATGCCAGTAGCACTTAATTGGTTT
TTACCAACTTTTACACGAAATTATTTATCCTGTTTTTAGTGAGCAAAATA
CCCAGATTCCAAGCAGAAGGTACCATAGCAAGCACAGCATCTCCTTGTAA
GTTTTCATCTTCCATTTTTCTAAATGAATTTAAACTGATGAACTAAAAGT
CTAAACTACTTGTATTTGGGCACTACTAACCAAAAAGAATAGTTATTGTC
AAGAATTACAATTACCATTTCTACTTCTCCCAACCAAAACTAGGAATCAG
AAAACGAATGGATAGGAGTGAAAGTTCGAGTTGGTTGTAAAGCCGATACA
TACCTTAATCACAATTTCTAGTGGATTGAGTTTGTTAATCTGTCCAACGA
CCAAACCTTAGTTTGGGCCCTTTAGACACAGAATTTCAAGCCTTGTTGTG
GACCTAATTGCTTTACGCCGTTTCGACACTAGTTCAACCCCATGCTGAGT
CTCAAATTCCCGTTTTTATGGCGAATTTTTCGTCCAATTTTGGCATAGac
cttttgtaaaaaaaaatgtaaacgtTTGCATTTTTATACCTTTAAAAAGT
CACATGCTCGACCATCCCCGTTTGTTACTTTTTGATGCTAATAAGAGTTT
GACCATATGAAAAATGGCTTTGTCAGCAATCAAAATTGTTAATTTAAGAA
TTACGctaagggaattaattttcgcgtgaagtaattttcctaattttgta
gatttttggcaaaaccgcgaaaatttgaacccgcgaaatacaaatatttt
gccaattttatcgaaaaatcccaaggaaaatgaaagaaatttgtccaaaa
aaggccAAAACGGCGAACATTTATTCCcgtgaaatgcaatttttcaattt
ttatattcAGCTTCCCGGAAATTACAAATCAGTCAACAAAAGCAGTTCAA
AAAGTAAGTTGATACCGTTTACTCTCCACTAAAGATATTTATcagttgaa
atttgagaatatttttaaactCGTTGTTATTGTTAGAGTTTCAAATGTGG
GACACACAATTCTTTATCAATCCCTGCGGGTGCGCCACAAGAAAGAAGTT
CATTATATActattttaaaactttaagtTACTTTCGAATTAATTGCGCTA
TCTTGGTTCTCTATTCTATAGAATGGACTCTATTGACGTgtacttaaaaa
agaaaaaaaatcgtatGAAATATCAAATGAATTATCATACAAAACTCAAG
GTGATTGTTCTTTTTAaactgaaattattttgattgtaTCAATTTGTATA
CCATACAAATGCTCGCTTATTTTTGAGTGCGGATTAACTGTCATTTGAAC
AAAATCTGAGGTCTGTTCTAAGAGTACCCAAAGCATGAGAGGCAGTCATC
GTTAGGTAAGACGGCCTCTCGCAAATCAGAAAAGTAGGACGAAAACTACC
CAAGCATTTTTAAAGGGTATTCAACTATTTCCCTTTTGCTGTTATTTGAT
TAAATTGTTAATTGATCGTTAAAAGATTCAGTGGTAATAATTTTGCCCTT
TAATCTCAAATTTACGCTATTTTTATATTGTGTTTTTCATAATCatatga
ttttattttcaaaaaagcctCCAAAAGTTATCATTAATTCAGCCTGGTCA
GAACCCCTTGTACAAAGATTGAACCTTAGGGATTTCTAATAATTTACGTT
ATAATAACCTTTCGAGTCAATACAAATATTCAAAGTTGTTTCTGTACTGC
ATTTTGaggtataagaaaaaattatttttatacctTATTTATGCTcattg
ggtcaagggctatcgtttgtCATTAGATTACTTGGATTACTTTACGTATA
TGAATGAGATAGTGGAAAAATTGGCTAATGTAAGTCCTCGAGCCTTTAGC
AGCCTTATGCTTTTAAATAATTTGACCTATTAAAAAAGGTATAGGTTTTA
CCTAAAAGGCCAGTACGCTAAACATTAGAACCTGAGGTCAAAAATGAAAC
GAATAGAGTTTTTGCCTCTGAAGCcgttttttgacaaatattgtcaTGAA
TCAATTTCTAGAGAGTATTTAAACCAGGGAAGGAATTAAATCAAAgctga
aaatgtttttcctttttgttacaCAGAAACAAGCTGAAGATAATCTGAAG
CGAATGAAGTTGTCACACAACACACCAAAGGCGGATACAGCTAATATTAC
TGCACGGGTATAAATGCACCTTCATCATCATTTTAGTCCAAGCGCTTCTC
TTCGGTCAAAGGAGAGAAATTGGATGTAATAGAAAACCAACTGAGCTCTG
GTTACGGAAAGTGTTTTAGCCTTGATTAGTTCGTTGAAAAGTTCAAGAAA
AGACGACTCGTCCTAAAAATTGACTGGCTCCTATATGTATATGCTATGAT
CATAAAAGTAGATTTACGTTTTTCGTTTTTGGCAAATTGCTCTCTAAACT
TTCGGTGTGAAGTGACTTTATATCAATAATGTTAAGttgtttcaataaaa
tttgGTAGAGCTTTGAGAAAAGcagattaaatttcttattttcttgcATT
CAGGGTTTCATCTAATGATCGGTTATATCATTAGAATTGCTAGGAAATTC
TTAGCAAAAAAATATAGGTATCTTTTTGTCTGAGCTAGGTGTTCTCAGAA
TATAAGCCCCTAAAATTTAGGTATAGATaattaaactgaaaataaaagaa
tttcgtCATATCACGCTAGCtatgcagatttttttgaagaaatccattaa
ccaaaacattaattttaaattctgtttcttttccaaagaaatcaaaaggC
AGCACACCAGTGGCAACCAAAACTACCAAACGTGCATCGACAGCTTCTTT
CAAAGTAGACAAAGAAGTGACCTTCAATTTCACATCAAAGCTGAAATCAC
CCAAACCTGTACTTAAAGAGTCTAATCTTAACAAGAGTGCAATCTCCTCC
TCCTACATCAAACCCACAAGAAAATCCTTCAAAAATGTCTCCATTCTCGA
CACCAAGTAAgactttttgttaattgtgaATTGTTTGCGANCTCCTACAT
CAAACCCACAAGAAAATCCTTCAAAAATGTCTCCATTCTCGACACCAAGT
AAgactttttgttaattgtgaATTGTTTGCGAAGGTATTTGCGAGGTATT
CTATAACTTGTCTTCCTTGTATGTTAAAGTTTTGTTGGCCCATTTACGCC
TTCTCACTTTCATCTCTTAGATCACCTAATGTAAAAACAACTTGCTCGTC
GTCTGCAACGAAGAAAACACCTGCGAAGTTTGATCTTCAAGCTTCTTTGA
AGAAGAGGCTGTCTTACAAGCCGCACTCTGGAAAACTGAAGGGTTCTTAC
TTTGCTGATAAGTCGTCAGCAGGAGCTAACACCACTTTCAACGCCAATTC
TACTTTTACGCTTTCCCCAAGGAAAGATGTCAAGCAATTGAGTAAACCAA
AAGCCAAAGCCAAGaggtaatattttttttttctcttttacagTGTCCAA
AGATCTATACCGATATTGAGGTACCTTCCCCTCGTGTACATTATtgtata
tttaaattttaaattattcattttttgttCTCTTTGCAGGGAGAATCGAC
GTAACGAAGCTNGTACCTTCCCCTCGTGTACATTATtgtatatttaaatt
ttaaattattcattttttgttCTCTTTGCAGGGAGAATCGACGTAACGAA
GCTACTAAACGACGTGACAACAAGAGAGCAGATGCACTTTCAAAACGTCG
TGGAATTCAAACttaagaaaatcattttatCCGTTTTTGACCCAGTGTAC
ATACACCCATATGTTTTAAGTAGTAGCATGTTTTATCATTTAACTGTATA
TAGTATCTTTATCTAACAACACTACCTCTTTGGAAAATGGGTATTACTGC
AAAttcttttgtaaattatttagTCACCATTATTTTTGACCAAAGAAATA
ATCAATATAGACTTTATACGTTTCAATGAATCTATCGAGTCCTGCTTTCT
TTTATAAACGTTTCTTTCAAGCGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031063XLOC_031063Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048879-exon-scaffold_148-1491911889:20089..20114TCONS_00048879-exon-scaffold_148-1491911889:20089..20114Clytia hemisphaericaexon
TCONS_00048879-exon-scaffold_148-1510915933:20089..20114TCONS_00048879-exon-scaffold_148-1510915933:20089..20114Clytia hemisphaericaexon
TCONS_00048879-exon-scaffold_148-1575043694:20089..20114TCONS_00048879-exon-scaffold_148-1575043694:20089..20114Clytia hemisphaericaexon
TCONS_00048879-exon-scaffold_148-1491911889:20528..20584TCONS_00048879-exon-scaffold_148-1491911889:20528..20584Clytia hemisphaericaexon
TCONS_00048879-exon-scaffold_148-1510915933:20528..20584TCONS_00048879-exon-scaffold_148-1510915933:20528..20584Clytia hemisphaericaexon
TCONS_00048879-exon-scaffold_148-1575043694:20528..20584TCONS_00048879-exon-scaffold_148-1575043694:20528..20584Clytia hemisphaericaexon
TCONS_00048879-exon-scaffold_148-1491911889:21349..21391TCONS_00048879-exon-scaffold_148-1491911889:21349..21391Clytia hemisphaericaexon
TCONS_00048879-exon-scaffold_148-1510915933:21349..21391TCONS_00048879-exon-scaffold_148-1510915933:21349..21391Clytia hemisphaericaexon
TCONS_00048879-exon-scaffold_148-1575043694:21349..21391TCONS_00048879-exon-scaffold_148-1575043694:21349..21391Clytia hemisphaericaexon
TCONS_00048879-exon-scaffold_148-1491911889:21610..21688TCONS_00048879-exon-scaffold_148-1491911889:21610..21688Clytia hemisphaericaexon
TCONS_00048879-exon-scaffold_148-1510915933:21610..21688TCONS_00048879-exon-scaffold_148-1510915933:21610..21688Clytia hemisphaericaexon
TCONS_00048879-exon-scaffold_148-1575043694:21610..21688TCONS_00048879-exon-scaffold_148-1575043694:21610..21688Clytia hemisphaericaexon
TCONS_00048879-exon-scaffold_148-1491911889:22565..22645TCONS_00048879-exon-scaffold_148-1491911889:22565..22645Clytia hemisphaericaexon
TCONS_00048879-exon-scaffold_148-1510915933:22565..22645TCONS_00048879-exon-scaffold_148-1510915933:22565..22645Clytia hemisphaericaexon
TCONS_00048879-exon-scaffold_148-1575043694:22565..22645TCONS_00048879-exon-scaffold_148-1575043694:22565..22645Clytia hemisphaericaexon
TCONS_00048879-exon-scaffold_148-1491911889:23227..23444TCONS_00048879-exon-scaffold_148-1491911889:23227..23444Clytia hemisphaericaexon
TCONS_00048879-exon-scaffold_148-1510915933:23227..23444TCONS_00048879-exon-scaffold_148-1510915933:23227..23444Clytia hemisphaericaexon
TCONS_00048879-exon-scaffold_148-1575043694:23227..23444TCONS_00048879-exon-scaffold_148-1575043694:23227..23444Clytia hemisphaericaexon
TCONS_00048879-exon-scaffold_148-1491911889:23659..23904TCONS_00048879-exon-scaffold_148-1491911889:23659..23904Clytia hemisphaericaexon
TCONS_00048879-exon-scaffold_148-1510915933:23659..23904TCONS_00048879-exon-scaffold_148-1510915933:23659..23904Clytia hemisphaericaexon
TCONS_00048879-exon-scaffold_148-1575043694:23659..23904TCONS_00048879-exon-scaffold_148-1575043694:23659..23904Clytia hemisphaericaexon
TCONS_00048879-exon-scaffold_148-1491911889:24120..24463TCONS_00048879-exon-scaffold_148-1491911889:24120..24463Clytia hemisphaericaexon
TCONS_00048879-exon-scaffold_148-1510915933:24120..24463TCONS_00048879-exon-scaffold_148-1510915933:24120..24463Clytia hemisphaericaexon
TCONS_00048879-exon-scaffold_148-1575043694:24120..24463TCONS_00048879-exon-scaffold_148-1575043694:24120..24463Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_148supercontigscaffold_148:20089..24463 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
29.9851	16.6535	13.2648	5.21152	158.061	86.6457	44.6747	49.8211	56.4891	44.4446	41.8798	42.1827	19.0167	32.3035	38.3879	27.7831	69.6865	72.905	1.45885	3.73762	30.4116	30.6447	45.5926	21.4155	67.55	82.1353	7.67375	11.342	16.8437	17.1523
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048879 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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