TCONS_00048877 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048877
Unique NameTCONS_00048877
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1103

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048877 ID=TCONS_00048877|Name=TCONS_00048877|organism=Clytia hemisphaerica|type=transcript|length=1103bp
AATAGCGCTACATCACTAGTATTGTGTAAGCGAAATGAGCAAAATACCCA
GATTCCAAGCAGAAGGTACCATAGCAAGCACAGCATCTCCTTCTTCCCGG
AAATTACAAATCAGTCAACAAAAGCAGTTCAAAAAAATGGACTCTATTGA
CGTgtacttaaaaaagaaaaaaaatcgtatGAAATATCAAATGAATTATC
ATACAAAACTCAAGAAACAAGCTGAAGATAATCTGAAGCGAATGAAGTTG
TCACACAACACACCAAAGGCGGATACAGCTAATATTACTGCACGGaaatc
aaaaggCAGCACACCAGTGGCAACCAAAACTACCAAACGTGCATCGACAG
CTTCTTTCAAAGTAGACAAAGAAGTGACCTTCAATTTCACATCAAAGCTG
AAATCACCCAAACCTGTACTTAAAGAGTCTAATCTTAACAAGAGTGCAAT
CTCCTCCTCCTACATCAAACCCACAAGAAAATCCTTCAAAAATGTCTCCA
TTCTCGACACCAAATCACCTAATGTAAAAACAACTTGCTCGTCGTCTGCA
ACGAAGAAAACACCTGCGAAGTTTGATCTTCAAGCTTCTTTGAAGAAGAG
GCTGTCTTACAAGCCGCACTCTGGAAAACTGAAGGGTTCTTACTTTGCTG
ATAAGTCGTCAGCAGGAGCTAACACCACTTTCAACGCCAATTCTACTTTT
ACGCTTTCCCCAAGGAAAGATGTCAAGCAATTGAGTAAACCAAAAGCCAA
AGCCAAGagGGAGAATCGACGTAACGAAGCTACTAAACGACGTGACAACA
AGAGAGCAGATGCACTTTCAAAACGTCGTGGAATTCAAACttaagaaaat
cattttatCCGTTTTTGACCCAGTGTACATACACCCATATGTTTTAAGTA
GTAGCATGTTTTATCATTTAACTGTATATAGTATCTTTATCTAACAACAC
TACCTCTTTGGAAAATGGGTATTACTGCAAAttcttttgtaaattattta
gTCACCATTATTTTTGACCAAAGAAATAATCAATATAGACTTTATACGTT
TCAATGAATCTATCGAGTCCTGCTTTCTTTTATAAACGTTTCTTTCAAGC
GTA
Run BLAST on NCBI

protein sequence of TCONS_00048877-protein

>TCONS_00048877-protein ID=TCONS_00048877-protein|Name=TCONS_00048877-protein|organism=Clytia hemisphaerica|type=polypeptide|length=269bp
MSKIPRFQAEGTIASTASPSSRKLQISQQKQFKKMDSIDVYLKKKKNRMK
YQMNYHTKLKKQAEDNLKRMKLSHNTPKADTANITARKSKGSTPVATKTT
KRASTASFKVDKEVTFNFTSKLKSPKPVLKESNLNKSAISSSYIKPTRKS
FKNVSILDTKSPNVKTTCSSSATKKTPAKFDLQASLKKRLSYKPHSGKLK
GSYFADKSSAGANTTFNANSTFTLSPRKDVKQLSKPKAKAKRENRRNEAT
KRRDNKRADALSKRRGIQT
Run BLAST on NCBI

transcript from alignment at scaffold_148:20080..24463+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048877 ID=TCONS_00048877|Name=TCONS_00048877|organism=Clytia hemisphaerica|type=transcript|length=4384bp|location=Sequence derived from alignment at scaffold_148:20080..24463+ (Clytia hemisphaerica)
AATAGCGCTACATCACTAGTATTGTGTAAGCGAAAGTAAGCGCTCTCGAT
TCAgttaccactttcaaaaaaactcagatcaaaatattttgcttggctgg
gatcgAGCTGTCTTAAGGGTCTATATATATATAAAGCTCAGCGAATACAG
ACCATAAATTTATAACGCTTTGGCGTTGAAAGTCTTGAAGGAAAATTAAA
GCGAATAGTTACCATTTTTGATGGTCCAATCAAATTATTTGAGTTGTTTC
TGCAAGATCAACAAGCAGCCTCATATATGTATATAGATTAGCCTTTAGAA
AAGCGAGACATTTGGCGTTGCGGTGCTCCTATTCTAGGTCAGGACCTACC
GGTACAGGACCGAAAAATATCGAGCTACCTCGTATATGCCAGTAGCACTT
AATTGGTTTTTACCAACTTTTACACGAAATTATTTATCCTGTTTTTAGTG
AGCAAAATACCCAGATTCCAAGCAGAAGGTACCATAGCAAGCACAGCATC
TCCTTGTAAGTTTTCATCTTCCATTTTTCTAAATGAATTTAAACTGATGA
ACTAAAAGTCTAAACTACTTGTATTTGGGCACTACTAACCAAAAAGAATA
GTTATTGTCAAGAATTACAATTACCATTTCTACTTCTCCCAACCAAAACT
AGGAATCAGAAAACGAATGGATAGGAGTGAAAGTTCGAGTTGGTTGTAAA
GCCGATACATACCTTAATCACAATTTCTAGTGGATTGAGTTTGTTAATCT
GTCCAACGACCAAACCTTAGTTTGGGCCCTTTAGACACAGAATTTCAAGC
CTTGTTGTGGACCTAATTGCTTTACGCCGTTTCGACACTAGTTCAACCCC
ATGCTGAGTCTCAAATTCCCGTTTTTATGGCGAATTTTTCGTCCAATTTT
GGCATAGaccttttgtaaaaaaaaatgtaaacgtTTGCATTTTTATACCT
TTAAAAAGTCACATGCTCGACCATCCCCGTTTGTTACTTTTTGATGCTAA
TAAGAGTTTGACCATATGAAAAATGGCTTTGTCAGCAATCAAAATTGTTA
ATTTAAGAATTACGctaagggaattaattttcgcgtgaagtaattttcct
aattttgtagatttttggcaaaaccgcgaaaatttgaacccgcgaaatac
aaatattttgccaattttatcgaaaaatcccaaggaaaatgaaagaaatt
tgtccaaaaaaggccAAAACGGCGAACATTTATTCCcgtgaaatgcaatt
tttcaatttttatattcAGCTTCCCGGAAATTACAAATCAGTCAACAAAA
GCAGTTCAAAAAGTAAGTTGATACCGTTTACTCTCCACTAAAGATATTTA
TcagttgaaatttgagaatatttttaaactCGTTGTTATTGTTAGAGTTT
CAAATGTGGGACACACAATTCTTTATCAATCCCTGCGGGTGCGCCACAAG
AAAGAAGTTCATTATATActattttaaaactttaagtTACTTTCGAATTA
ATTGCGCTATCTTGGTTCTCTATTCTATAGAATGGACTCTATTGACGTgt
acttaaaaaagaaaaaaaatcgtatGAAATATCAAATGAATTATCATACA
AAACTCAAGGTGATTGTTCTTTTTAaactgaaattattttgattgtaTCA
ATTTGTATACCATACAAATGCTCGCTTATTTTTGAGTGCGGATTAACTGT
CATTTGAACAAAATCTGAGGTCTGTTCTAAGAGTACCCAAAGCATGAGAG
GCAGTCATCGTTAGGTAAGACGGCCTCTCGCAAATCAGAAAAGTAGGACG
AAAACTACCCAAGCATTTTTAAAGGGTATTCAACTATTTCCCTTTTGCTG
TTATTTGATTAAATTGTTAATTGATCGTTAAAAGATTCAGTGGTAATAAT
TTTGCCCTTTAATCTCAAATTTACGCTATTTTTATATTGTGTTTTTCATA
ATCatatgattttattttcaaaaaagcctCCAAAAGTTATCATTAATTCA
GCCTGGTCAGAACCCCTTGTACAAAGATTGAACCTTAGGGATTTCTAATA
ATTTACGTTATAATAACCTTTCGAGTCAATACAAATATTCAAAGTTGTTT
CTGTACTGCATTTTGaggtataagaaaaaattatttttatacctTATTTA
TGCTcattgggtcaagggctatcgtttgtCATTAGATTACTTGGATTACT
TTACGTATATGAATGAGATAGTGGAAAAATTGGCTAATGTAAGTCCTCGA
GCCTTTAGCAGCCTTATGCTTTTAAATAATTTGACCTATTAAAAAAGGTA
TAGGTTTTACCTAAAAGGCCAGTACGCTAAACATTAGAACCTGAGGTCAA
AAATGAAACGAATAGAGTTTTTGCCTCTGAAGCcgttttttgacaaatat
tgtcaTGAATCAATTTCTAGAGAGTATTTAAACCAGGGAAGGAATTAAAT
CAAAgctgaaaatgtttttcctttttgttacaCAGAAACAAGCTGAAGAT
AATCTGAAGCGAATGAAGTTGTCACACAACACACCAAAGGCGGATACAGC
TAATATTACTGCACGGGTATAAATGCACCTTCATCATCATTTTAGTCCAA
GCGCTTCTCTTCGGTCAAAGGAGAGAAATTGGATGTAATAGAAAACCAAC
TGAGCTCTGGTTACGGAAAGTGTTTTAGCCTTGATTAGTTCGTTGAAAAG
TTCAAGAAAAGACGACTCGTCCTAAAAATTGACTGGCTCCTATATGTATA
TGCTATGATCATAAAAGTAGATTTACGTTTTTCGTTTTTGGCAAATTGCT
CTCTAAACTTTCGGTGTGAAGTGACTTTATATCAATAATGTTAAGttgtt
tcaataaaatttgGTAGAGCTTTGAGAAAAGcagattaaatttcttattt
tcttgcATTCAGGGTTTCATCTAATGATCGGTTATATCATTAGAATTGCT
AGGAAATTCTTAGCAAAAAAATATAGGTATCTTTTTGTCTGAGCTAGGTG
TTCTCAGAATATAAGCCCCTAAAATTTAGGTATAGATaattaaactgaaa
ataaaagaatttcgtCATATCACGCTAGCtatgcagatttttttgaagaa
atccattaaccaaaacattaattttaaattctgtttcttttccaaagaaa
tcaaaaggCAGCACACCAGTGGCAACCAAAACTACCAAACGTGCATCGAC
AGCTTCTTTCAAAGTAGACAAAGAAGTGACCTTCAATTTCACATCAAAGC
TGAAATCACCCAAACCTGTACTTAAAGAGTCTAATCTTAACAAGAGTGCA
ATCTCCTCCTCCTACATCAAACCCACAAGAAAATCCTTCAAAAATGTCTC
CATTCTCGACACCAAGTAAgactttttgttaattgtgaATTGTTTGCGAN
CTCCTACATCAAACCCACAAGAAAATCCTTCAAAAATGTCTCCATTCTCG
ACACCAAGTAAgactttttgttaattgtgaATTGTTTGCGAAGGTATTTG
CGAGGTATTCTATAACTTGTCTTCCTTGTATGTTAAAGTTTTGTTGGCCC
ATTTACGCCTTCTCACTTTCATCTCTTAGATCACCTAATGTAAAAACAAC
TTGCTCGTCGTCTGCAACGAAGAAAACACCTGCGAAGTTTGATCTTCAAG
CTTCTTTGAAGAAGAGGCTGTCTTACAAGCCGCACTCTGGAAAACTGAAG
GGTTCTTACTTTGCTGATAAGTCGTCAGCAGGAGCTAACACCACTTTCAA
CGCCAATTCTACTTTTACGCTTTCCCCAAGGAAAGATGTCAAGCAATTGA
GTAAACCAAAAGCCAAAGCCAAGaggtaatattttttttttctcttttac
agTGTCCAAAGATCTATACCGATATTGAGGTACCTTCCCCTCGTGTACAT
TATtgtatatttaaattttaaattattcattttttgttCTCTTTGCAGGG
AGAATCGACGTAACGAAGCTNGTACCTTCCCCTCGTGTACATTATtgtat
atttaaattttaaattattcattttttgttCTCTTTGCAGGGAGAATCGA
CGTAACGAAGCTACTAAACGACGTGACAACAAGAGAGCAGATGCACTTTC
AAAACGTCGTGGAATTCAAACttaagaaaatcattttatCCGTTTTTGAC
CCAGTGTACATACACCCATATGTTTTAAGTAGTAGCATGTTTTATCATTT
AACTGTATATAGTATCTTTATCTAACAACACTACCTCTTTGGAAAATGGG
TATTACTGCAAAttcttttgtaaattatttagTCACCATTATTTTTGACC
AAAGAAATAATCAATATAGACTTTATACGTTTCAATGAATCTATCGAGTC
CTGCTTTCTTTTATAAACGTTTCTTTCAAGCGTA

Coding sequence (CDS) from alignment at scaffold_148:20080..24463+

>TCONS_00048877 ID=TCONS_00048877|Name=TCONS_00048877|organism=Clytia hemisphaerica|type=CDS|length=7290bp|location=Sequence derived from alignment at scaffold_148:20080..24463+ (Clytia hemisphaerica)
ATGAGCAAAATACCCAGATTCCAAGCAGAAGGTACCATAGCAAGCACAGC
ATCTCCTTCTTCCCGGAAATTACAAATCAGTCAACAAAAGCAGTTCAAAA
AAATGGACTCTATTGACGTgtacttaaaaaagaaaaaaaatcgtatGAAA
TATCAAATGAATTATCATACAAAACTCAAGAAACAAGCTGAAGATAATCT
GAAGCGAATGAAGTTGTCACACAACACACCAAAGGCGGATACAGCTAATA
TTACTGCACGGaaatcaaaaggCAGCACACCAGTGGCAACCAAAACTACC
AAACGTGCATCGACAGCTTCTTTCAAAGTAGACAAAGAAGTGACCTTCAA
TTTCACATCAAAGCTGAAATCACCCAAACCTGTACTTAAAGAGTCTAATC
TTAACAAGAGTGCAATCTCCTCCTCCTACATCAAACCCACAAGAAAATCC
TTCAAAAATGTCTCCATTCTCGACACCAAATCACCTAATGTAAAAACAAC
TTGCTCGTCGTCTGCAACGAAGAAAACACCTGCGAAGTTTGATCTTCAAG
CTTCTTTGAAGAAGAGGCTGTCTTACAAGCCGCACTCTGGAAAACTGAAG
GGTTCTTACTTTGCTGATAAGTCGTCAGCAGGAGCTAACACCACTTTCAA
CGCCAATTCTACTTTTACGCTTTCCCCAAGGAAAGATGTCAAGCAATTGA
GTAAACCAAAAGCCAAAGCCAAGagGGAGAATCGACGTAACGAAGCTACT
AAACGACGTGACAACAAGAGAGCAGATGCACTTTCAAAACGTCGTGGAAT
TCAAACttaaATGAGCAAAATACCCAGATTCCAAGCAGAAGGTACCATAG
CAAGCACAGCATCTCCTTCTTCCCGGAAATTACAAATCAGTCAACAAAAG
CAGTTCAAAAAAATGGACTCTATTGACGTgtacttaaaaaagaaaaaaaa
tcgtatGAAATATCAAATGAATTATCATACAAAACTCAAGAAACAAGCTG
AAGATAATCTGAAGCGAATGAAGTTGTCACACAACACACCAAAGGCGGAT
ACAGCTAATATTACTGCACGGaaatcaaaaggCAGCACACCAGTGGCAAC
CAAAACTACCAAACGTGCATCGACAGCTTCTTTCAAAGTAGACAAAGAAG
TGACCTTCAATTTCACATCAAAGCTGAAATCACCCAAACCTGTACTTAAA
GAGTCTAATCTTAACAAGAGTGCAATCTCCTCCTCCTACATCAAACCCAC
AAGAAAATCCTTCAAAAATGTCTCCATTCTCGACACCAAATCACCTAATG
TAAAAACAACTTGCTCGTCGTCTGCAACGAAGAAAACACCTGCGAAGTTT
GATCTTCAAGCTTCTTTGAAGAAGAGGCTGTCTTACAAGCCGCACTCTGG
AAAACTGAAGGGTTCTTACTTTGCTGATAAGTCGTCAGCAGGAGCTAACA
CCACTTTCAACGCCAATTCTACTTTTACGCTTTCCCCAAGGAAAGATGTC
AAGCAATTGAGTAAACCAAAAGCCAAAGCCAAGagGGAGAATCGACGTAA
CGAAGCTACTAAACGACGTGACAACAAGAGAGCAGATGCACTTTCAAAAC
GTCGTGGAATTCAAACttaaATGAGCAAAATACCCAGATTCCAAGCAGAA
GGTACCATAGCAAGCACAGCATCTCCTTCTTCCCGGAAATTACAAATCAG
TCAACAAAAGCAGTTCAAAAAAATGGACTCTATTGACGTgtacttaaaaa
agaaaaaaaatcgtatGAAATATCAAATGAATTATCATACAAAACTCAAG
AAACAAGCTGAAGATAATCTGAAGCGAATGAAGTTGTCACACAACACACC
AAAGGCGGATACAGCTAATATTACTGCACGGaaatcaaaaggCAGCACAC
CAGTGGCAACCAAAACTACCAAACGTGCATCGACAGCTTCTTTCAAAGTA
GACAAAGAAGTGACCTTCAATTTCACATCAAAGCTGAAATCACCCAAACC
TGTACTTAAAGAGTCTAATCTTAACAAGAGTGCAATCTCCTCCTCCTACA
TCAAACCCACAAGAAAATCCTTCAAAAATGTCTCCATTCTCGACACCAAA
TCACCTAATGTAAAAACAACTTGCTCGTCGTCTGCAACGAAGAAAACACC
TGCGAAGTTTGATCTTCAAGCTTCTTTGAAGAAGAGGCTGTCTTACAAGC
CGCACTCTGGAAAACTGAAGGGTTCTTACTTTGCTGATAAGTCGTCAGCA
GGAGCTAACACCACTTTCAACGCCAATTCTACTTTTACGCTTTCCCCAAG
GAAAGATGTCAAGCAATTGAGTAAACCAAAAGCCAAAGCCAAGagGGAGA
ATCGACGTAACGAAGCTACTAAACGACGTGACAACAAGAGAGCAGATGCA
CTTTCAAAACGTCGTGGAATTCAAACttaaATGAGCAAAATACCCAGATT
CCAAGCAGAAGGTACCATAGCAAGCACAGCATCTCCTTCTTCCCGGAAAT
TACAAATCAGTCAACAAAAGCAGTTCAAAAAAATGGACTCTATTGACGTg
tacttaaaaaagaaaaaaaatcgtatGAAATATCAAATGAATTATCATAC
AAAACTCAAGAAACAAGCTGAAGATAATCTGAAGCGAATGAAGTTGTCAC
ACAACACACCAAAGGCGGATACAGCTAATATTACTGCACGGaaatcaaaa
ggCAGCACACCAGTGGCAACCAAAACTACCAAACGTGCATCGACAGCTTC
TTTCAAAGTAGACAAAGAAGTGACCTTCAATTTCACATCAAAGCTGAAAT
CACCCAAACCTGTACTTAAAGAGTCTAATCTTAACAAGAGTGCAATCTCC
TCCTCCTACATCAAACCCACAAGAAAATCCTTCAAAAATGTCTCCATTCT
CGACACCAAATCACCTAATGTAAAAACAACTTGCTCGTCGTCTGCAACGA
AGAAAACACCTGCGAAGTTTGATCTTCAAGCTTCTTTGAAGAAGAGGCTG
TCTTACAAGCCGCACTCTGGAAAACTGAAGGGTTCTTACTTTGCTGATAA
GTCGTCAGCAGGAGCTAACACCACTTTCAACGCCAATTCTACTTTTACGC
TTTCCCCAAGGAAAGATGTCAAGCAATTGAGTAAACCAAAAGCCAAAGCC
AAGagGGAGAATCGACGTAACGAAGCTACTAAACGACGTGACAACAAGAG
AGCAGATGCACTTTCAAAACGTCGTGGAATTCAAACttaaATGAGCAAAA
TACCCAGATTCCAAGCAGAAGGTACCATAGCAAGCACAGCATCTCCTTCT
TCCCGGAAATTACAAATCAGTCAACAAAAGCAGTTCAAAAAAATGGACTC
TATTGACGTgtacttaaaaaagaaaaaaaatcgtatGAAATATCAAATGA
ATTATCATACAAAACTCAAGAAACAAGCTGAAGATAATCTGAAGCGAATG
AAGTTGTCACACAACACACCAAAGGCGGATACAGCTAATATTACTGCACG
GaaatcaaaaggCAGCACACCAGTGGCAACCAAAACTACCAAACGTGCAT
CGACAGCTTCTTTCAAAGTAGACAAAGAAGTGACCTTCAATTTCACATCA
AAGCTGAAATCACCCAAACCTGTACTTAAAGAGTCTAATCTTAACAAGAG
TGCAATCTCCTCCTCCTACATCAAACCCACAAGAAAATCCTTCAAAAATG
TCTCCATTCTCGACACCAAATCACCTAATGTAAAAACAACTTGCTCGTCG
TCTGCAACGAAGAAAACACCTGCGAAGTTTGATCTTCAAGCTTCTTTGAA
GAAGAGGCTGTCTTACAAGCCGCACTCTGGAAAACTGAAGGGTTCTTACT
TTGCTGATAAGTCGTCAGCAGGAGCTAACACCACTTTCAACGCCAATTCT
ACTTTTACGCTTTCCCCAAGGAAAGATGTCAAGCAATTGAGTAAACCAAA
AGCCAAAGCCAAGagGGAGAATCGACGTAACGAAGCTACTAAACGACGTG
ACAACAAGAGAGCAGATGCACTTTCAAAACGTCGTGGAATTCAAACttaa
ATGAGCAAAATACCCAGATTCCAAGCAGAAGGTACCATAGCAAGCACAGC
ATCTCCTTCTTCCCGGAAATTACAAATCAGTCAACAAAAGCAGTTCAAAA
AAATGGACTCTATTGACGTgtacttaaaaaagaaaaaaaatcgtatGAAA
TATCAAATGAATTATCATACAAAACTCAAGAAACAAGCTGAAGATAATCT
GAAGCGAATGAAGTTGTCACACAACACACCAAAGGCGGATACAGCTAATA
TTACTGCACGGaaatcaaaaggCAGCACACCAGTGGCAACCAAAACTACC
AAACGTGCATCGACAGCTTCTTTCAAAGTAGACAAAGAAGTGACCTTCAA
TTTCACATCAAAGCTGAAATCACCCAAACCTGTACTTAAAGAGTCTAATC
TTAACAAGAGTGCAATCTCCTCCTCCTACATCAAACCCACAAGAAAATCC
TTCAAAAATGTCTCCATTCTCGACACCAAATCACCTAATGTAAAAACAAC
TTGCTCGTCGTCTGCAACGAAGAAAACACCTGCGAAGTTTGATCTTCAAG
CTTCTTTGAAGAAGAGGCTGTCTTACAAGCCGCACTCTGGAAAACTGAAG
GGTTCTTACTTTGCTGATAAGTCGTCAGCAGGAGCTAACACCACTTTCAA
CGCCAATTCTACTTTTACGCTTTCCCCAAGGAAAGATGTCAAGCAATTGA
GTAAACCAAAAGCCAAAGCCAAGagGGAGAATCGACGTAACGAAGCTACT
AAACGACGTGACAACAAGAGAGCAGATGCACTTTCAAAACGTCGTGGAAT
TCAAACttaaATGAGCAAAATACCCAGATTCCAAGCAGAAGGTACCATAG
CAAGCACAGCATCTCCTTCTTCCCGGAAATTACAAATCAGTCAACAAAAG
CAGTTCAAAAAAATGGACTCTATTGACGTgtacttaaaaaagaaaaaaaa
tcgtatGAAATATCAAATGAATTATCATACAAAACTCAAGAAACAAGCTG
AAGATAATCTGAAGCGAATGAAGTTGTCACACAACACACCAAAGGCGGAT
ACAGCTAATATTACTGCACGGaaatcaaaaggCAGCACACCAGTGGCAAC
CAAAACTACCAAACGTGCATCGACAGCTTCTTTCAAAGTAGACAAAGAAG
TGACCTTCAATTTCACATCAAAGCTGAAATCACCCAAACCTGTACTTAAA
GAGTCTAATCTTAACAAGAGTGCAATCTCCTCCTCCTACATCAAACCCAC
AAGAAAATCCTTCAAAAATGTCTCCATTCTCGACACCAAATCACCTAATG
TAAAAACAACTTGCTCGTCGTCTGCAACGAAGAAAACACCTGCGAAGTTT
GATCTTCAAGCTTCTTTGAAGAAGAGGCTGTCTTACAAGCCGCACTCTGG
AAAACTGAAGGGTTCTTACTTTGCTGATAAGTCGTCAGCAGGAGCTAACA
CCACTTTCAACGCCAATTCTACTTTTACGCTTTCCCCAAGGAAAGATGTC
AAGCAATTGAGTAAACCAAAAGCCAAAGCCAAGagGGAGAATCGACGTAA
CGAAGCTACTAAACGACGTGACAACAAGAGAGCAGATGCACTTTCAAAAC
GTCGTGGAATTCAAACttaaATGAGCAAAATACCCAGATTCCAAGCAGAA
GGTACCATAGCAAGCACAGCATCTCCTTCTTCCCGGAAATTACAAATCAG
TCAACAAAAGCAGTTCAAAAAAATGGACTCTATTGACGTgtacttaaaaa
agaaaaaaaatcgtatGAAATATCAAATGAATTATCATACAAAACTCAAG
AAACAAGCTGAAGATAATCTGAAGCGAATGAAGTTGTCACACAACACACC
AAAGGCGGATACAGCTAATATTACTGCACGGaaatcaaaaggCAGCACAC
CAGTGGCAACCAAAACTACCAAACGTGCATCGACAGCTTCTTTCAAAGTA
GACAAAGAAGTGACCTTCAATTTCACATCAAAGCTGAAATCACCCAAACC
TGTACTTAAAGAGTCTAATCTTAACAAGAGTGCAATCTCCTCCTCCTACA
TCAAACCCACAAGAAAATCCTTCAAAAATGTCTCCATTCTCGACACCAAA
TCACCTAATGTAAAAACAACTTGCTCGTCGTCTGCAACGAAGAAAACACC
TGCGAAGTTTGATCTTCAAGCTTCTTTGAAGAAGAGGCTGTCTTACAAGC
CGCACTCTGGAAAACTGAAGGGTTCTTACTTTGCTGATAAGTCGTCAGCA
GGAGCTAACACCACTTTCAACGCCAATTCTACTTTTACGCTTTCCCCAAG
GAAAGATGTCAAGCAATTGAGTAAACCAAAAGCCAAAGCCAAGagGGAGA
ATCGACGTAACGAAGCTACTAAACGACGTGACAACAAGAGAGCAGATGCA
CTTTCAAAACGTCGTGGAATTCAAACttaaATGAGCAAAATACCCAGATT
CCAAGCAGAAGGTACCATAGCAAGCACAGCATCTCCTTCTTCCCGGAAAT
TACAAATCAGTCAACAAAAGCAGTTCAAAAAAATGGACTCTATTGACGTg
tacttaaaaaagaaaaaaaatcgtatGAAATATCAAATGAATTATCATAC
AAAACTCAAGAAACAAGCTGAAGATAATCTGAAGCGAATGAAGTTGTCAC
ACAACACACCAAAGGCGGATACAGCTAATATTACTGCACGGaaatcaaaa
ggCAGCACACCAGTGGCAACCAAAACTACCAAACGTGCATCGACAGCTTC
TTTCAAAGTAGACAAAGAAGTGACCTTCAATTTCACATCAAAGCTGAAAT
CACCCAAACCTGTACTTAAAGAGTCTAATCTTAACAAGAGTGCAATCTCC
TCCTCCTACATCAAACCCACAAGAAAATCCTTCAAAAATGTCTCCATTCT
CGACACCAAATCACCTAATGTAAAAACAACTTGCTCGTCGTCTGCAACGA
AGAAAACACCTGCGAAGTTTGATCTTCAAGCTTCTTTGAAGAAGAGGCTG
TCTTACAAGCCGCACTCTGGAAAACTGAAGGGTTCTTACTTTGCTGATAA
GTCGTCAGCAGGAGCTAACACCACTTTCAACGCCAATTCTACTTTTACGC
TTTCCCCAAGGAAAGATGTCAAGCAATTGAGTAAACCAAAAGCCAAAGCC
AAGagGGAGAATCGACGTAACGAAGCTACTAAACGACGTGACAACAAGAG
AGCAGATGCACTTTCAAAACGTCGTGGAATTCAAACttaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031063XLOC_031063Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048877-exon-scaffold_148-1491911889:20080..20114TCONS_00048877-exon-scaffold_148-1491911889:20080..20114Clytia hemisphaericaexon
TCONS_00048877-exon-scaffold_148-1510915933:20080..20114TCONS_00048877-exon-scaffold_148-1510915933:20080..20114Clytia hemisphaericaexon
TCONS_00048877-exon-scaffold_148-1575043694:20080..20114TCONS_00048877-exon-scaffold_148-1575043694:20080..20114Clytia hemisphaericaexon
TCONS_00048877-exon-scaffold_148-1491911889:20528..20584TCONS_00048877-exon-scaffold_148-1491911889:20528..20584Clytia hemisphaericaexon
TCONS_00048877-exon-scaffold_148-1510915933:20528..20584TCONS_00048877-exon-scaffold_148-1510915933:20528..20584Clytia hemisphaericaexon
TCONS_00048877-exon-scaffold_148-1575043694:20528..20584TCONS_00048877-exon-scaffold_148-1575043694:20528..20584Clytia hemisphaericaexon
TCONS_00048877-exon-scaffold_148-1491911889:21349..21391TCONS_00048877-exon-scaffold_148-1491911889:21349..21391Clytia hemisphaericaexon
TCONS_00048877-exon-scaffold_148-1510915933:21349..21391TCONS_00048877-exon-scaffold_148-1510915933:21349..21391Clytia hemisphaericaexon
TCONS_00048877-exon-scaffold_148-1575043694:21349..21391TCONS_00048877-exon-scaffold_148-1575043694:21349..21391Clytia hemisphaericaexon
TCONS_00048877-exon-scaffold_148-1491911889:21610..21688TCONS_00048877-exon-scaffold_148-1491911889:21610..21688Clytia hemisphaericaexon
TCONS_00048877-exon-scaffold_148-1510915933:21610..21688TCONS_00048877-exon-scaffold_148-1510915933:21610..21688Clytia hemisphaericaexon
TCONS_00048877-exon-scaffold_148-1575043694:21610..21688TCONS_00048877-exon-scaffold_148-1575043694:21610..21688Clytia hemisphaericaexon
TCONS_00048877-exon-scaffold_148-1491911889:22565..22645TCONS_00048877-exon-scaffold_148-1491911889:22565..22645Clytia hemisphaericaexon
TCONS_00048877-exon-scaffold_148-1510915933:22565..22645TCONS_00048877-exon-scaffold_148-1510915933:22565..22645Clytia hemisphaericaexon
TCONS_00048877-exon-scaffold_148-1575043694:22565..22645TCONS_00048877-exon-scaffold_148-1575043694:22565..22645Clytia hemisphaericaexon
TCONS_00048877-exon-scaffold_148-1491911889:23227..23394TCONS_00048877-exon-scaffold_148-1491911889:23227..23394Clytia hemisphaericaexon
TCONS_00048877-exon-scaffold_148-1510915933:23227..23394TCONS_00048877-exon-scaffold_148-1510915933:23227..23394Clytia hemisphaericaexon
TCONS_00048877-exon-scaffold_148-1575043694:23227..23394TCONS_00048877-exon-scaffold_148-1575043694:23227..23394Clytia hemisphaericaexon
TCONS_00048877-exon-scaffold_148-1491911889:23487..23536TCONS_00048877-exon-scaffold_148-1491911889:23487..23536Clytia hemisphaericaexon
TCONS_00048877-exon-scaffold_148-1510915933:23487..23536TCONS_00048877-exon-scaffold_148-1510915933:23487..23536Clytia hemisphaericaexon
TCONS_00048877-exon-scaffold_148-1575043694:23487..23536TCONS_00048877-exon-scaffold_148-1575043694:23487..23536Clytia hemisphaericaexon
TCONS_00048877-exon-scaffold_148-1491911889:23659..23904TCONS_00048877-exon-scaffold_148-1491911889:23659..23904Clytia hemisphaericaexon
TCONS_00048877-exon-scaffold_148-1510915933:23659..23904TCONS_00048877-exon-scaffold_148-1510915933:23659..23904Clytia hemisphaericaexon
TCONS_00048877-exon-scaffold_148-1575043694:23659..23904TCONS_00048877-exon-scaffold_148-1575043694:23659..23904Clytia hemisphaericaexon
TCONS_00048877-exon-scaffold_148-1491911889:24120..24463TCONS_00048877-exon-scaffold_148-1491911889:24120..24463Clytia hemisphaericaexon
TCONS_00048877-exon-scaffold_148-1510915933:24120..24463TCONS_00048877-exon-scaffold_148-1510915933:24120..24463Clytia hemisphaericaexon
TCONS_00048877-exon-scaffold_148-1575043694:24120..24463TCONS_00048877-exon-scaffold_148-1575043694:24120..24463Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048877-proteinTCONS_00048877-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_148supercontigscaffold_148:20080..24463 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.72425	17.7273	1.24105e-05	4.0931	70.3262	90.3746	58.7854	43.4308	6.89481	18.7744	8.95645	13.0229	13.3256	2.42928	8.09458	24.6147	13.7644	2.74479	26.7344	18.3908	22.6976	20.1745	17.3887	28.5855	57.6396	36.7949	17.18	11.5368	13.4562	17.4679
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR026756NuSAP
Vocabulary: Biological Process
TermDefinition
GO:0000226microtubule cytoskeleton organization
GO:0000281mitotic cytokinesis
GO:0040001establishment of mitotic spindle localization
Vocabulary: Cellular Component
TermDefinition
GO:0005819spindle
GO:0005874microtubule
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0040001 establishment of mitotic spindle localization
biological_process GO:0000226 microtubule cytoskeleton organization
biological_process GO:0000281 mitotic cytokinesis
cellular_component GO:0005874 microtubule
cellular_component GO:0005819 spindle
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048877 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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